Wall clock time and date at job start Wed Apr 1 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53119 * 109.52281 * 2 1 4 4 C 1.53031 * 109.27900 * 182.43895 * 3 2 1 5 5 N 1.46851 * 109.52389 * 59.17739 * 4 3 2 6 6 C 1.39051 * 110.99717 * 174.15716 * 5 4 3 7 7 C 1.39238 * 119.92989 * 59.74401 * 6 5 4 8 8 C 1.37591 * 120.06923 * 179.97438 * 7 6 5 9 9 C 1.39810 * 119.92867 * 359.97438 * 8 7 6 10 10 C 1.47516 * 120.06728 * 179.97438 * 9 8 7 11 11 O 1.21597 * 120.00051 * 179.97438 * 10 9 8 12 12 N 1.34774 * 120.00329 * 359.97438 * 10 9 8 13 13 C 1.46497 * 120.00266 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47060 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00168 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99971 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00111 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99991 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47280 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47064 * 120.00121 * 18 16 14 21 21 H 1.48496 * 109.47158 * 240.00477 * 18 16 14 22 22 C 1.39778 * 119.86574 * 359.97438 * 9 8 7 23 23 C 1.37638 * 119.92883 * 359.72889 * 22 9 8 24 24 N 1.48011 * 119.96664 * 180.27002 * 23 22 9 25 25 O 1.21803 * 120.00294 * 5.38530 * 24 23 22 26 26 O 1.21799 * 120.00123 * 185.38449 * 24 23 22 27 27 C 1.46842 * 111.19634 * 298.25762 * 5 4 3 28 28 C 1.53035 * 109.52499 * 61.74293 * 27 5 4 29 29 H 1.09002 * 109.47406 * 60.00441 * 1 2 3 30 30 H 1.09001 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47489 * 299.99876 * 1 2 3 32 32 H 1.09007 * 109.57082 * 120.15489 * 2 1 3 33 33 H 1.09000 * 109.49812 * 302.38406 * 3 2 1 34 34 H 1.08997 * 109.50182 * 62.49181 * 3 2 1 35 35 H 1.09004 * 109.46148 * 179.19511 * 4 3 2 36 36 H 1.08995 * 109.46222 * 299.16171 * 4 3 2 37 37 H 1.08001 * 119.96368 * 0.02562 * 7 6 5 38 38 H 1.07992 * 120.03423 * 179.97438 * 8 7 6 39 39 H 0.97004 * 119.99807 * 0.02562 * 12 10 9 40 40 H 1.08998 * 109.47267 * 300.00075 * 13 12 10 41 41 H 1.09001 * 109.47237 * 60.00357 * 13 12 10 42 42 H 0.97003 * 120.00165 * 179.97438 * 17 16 14 43 43 H 1.08000 * 120.03880 * 180.02562 * 22 9 8 44 44 H 1.08999 * 109.46562 * 301.72177 * 27 5 4 45 45 H 1.08999 * 109.45807 * 181.75888 * 27 5 4 46 46 H 1.08998 * 109.50597 * 180.87340 * 28 27 5 47 47 H 1.08998 * 109.50306 * 60.75771 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5708 1.4371 -0.0615 5 7 4.0102 0.7429 -1.2787 6 6 5.3892 0.8329 -1.4332 7 6 6.2332 0.3202 -0.4516 8 6 7.5981 0.4072 -0.6018 9 6 8.1373 1.0107 -1.7418 10 6 9.6003 1.1061 -1.9057 11 8 10.0679 1.6308 -2.8979 12 7 10.4185 0.6117 -0.9557 13 6 11.8713 0.7059 -1.1188 14 6 12.5520 0.0831 0.0727 15 1 11.9614 -0.3410 0.8714 16 6 13.9287 0.0536 0.1428 17 7 14.6478 0.5695 -0.8299 18 14 14.7724 -0.7191 1.6195 19 1 13.7469 -1.2243 2.5673 20 1 15.6264 -1.8469 1.1676 21 1 15.6147 0.2990 2.2972 22 6 7.2875 1.5234 -2.7259 23 6 5.9230 1.4279 -2.5727 24 7 5.0223 1.9652 -3.6172 25 8 5.4860 2.4027 -4.6551 26 8 3.8175 1.9701 -3.4388 27 6 3.5709 -0.6582 -1.2788 28 6 2.0418 -0.7147 -1.2537 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8951 -0.5159 0.8881 33 1 1.6446 1.9700 -0.8677 34 1 1.7160 1.9447 0.9113 35 1 3.9377 2.4634 -0.0760 36 1 3.9673 0.9222 0.8135 37 1 5.8160 -0.1470 0.4283 38 1 8.2521 0.0097 0.1601 39 1 10.0454 0.1927 -0.1644 40 1 12.1703 0.1783 -2.0245 41 1 12.1610 1.7539 -1.1964 42 1 15.6164 0.5491 -0.7804 43 1 7.7010 1.9898 -3.6079 44 1 3.9675 -1.1633 -0.3981 45 1 3.9379 -1.1537 -2.1776 46 1 1.7162 -1.7548 -1.2382 47 1 1.6448 -0.2218 -2.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343896204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:33 Heat of formation + Delta-G solvation = -30.296250 kcal Electronic energy + Delta-G solvation = -30367.317134 eV Core-core repulsion = 26131.323516 eV Total energy + Delta-G solvation = -4235.993619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.26503 -41.69656 -40.71815 -38.99149 -37.52934 -36.35240 -35.79480 -34.52623 -33.19981 -31.84455 -31.73927 -29.55501 -28.61041 -27.25557 -25.47450 -24.22814 -24.15686 -23.76897 -22.75371 -21.82670 -20.51572 -20.47750 -19.64698 -18.79024 -18.54046 -18.32294 -17.69361 -17.46542 -16.57517 -16.39804 -16.11784 -16.09010 -15.63672 -15.41532 -15.26798 -14.98821 -14.85437 -14.30442 -14.26870 -14.13788 -13.76486 -13.72217 -13.39082 -13.14904 -12.92798 -12.77921 -12.73470 -12.63622 -12.55970 -12.26230 -12.22480 -12.15326 -12.12682 -11.55229 -11.48905 -11.23717 -11.18030 -11.15609 -10.86470 -10.84310 -10.39597 -9.94530 -9.59080 -8.30767 -6.47653 -1.28359 -0.67732 0.23676 0.37395 1.44361 1.44742 1.46438 1.58198 2.11131 2.32607 2.34585 2.42163 3.05232 3.26214 3.46037 3.55188 3.56403 3.62842 3.86502 3.87420 3.94956 4.23448 4.28693 4.33237 4.36084 4.47478 4.57825 4.64094 4.73937 4.79915 4.80718 4.90106 4.91219 4.96088 5.07114 5.08394 5.18166 5.18707 5.24677 5.31820 5.35915 5.36134 5.44114 5.58891 5.64139 5.79686 5.86473 5.98780 6.59590 6.62760 6.69868 7.15407 7.30125 8.81520 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.002317 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.025437 B =12081.092534 C =13507.606616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.107 4.107 4 C 0.061 3.939 5 N -0.514 5.514 6 C 0.190 3.810 7 C -0.137 4.137 8 C -0.006 4.006 9 C -0.135 4.135 10 C 0.540 3.460 11 O -0.593 6.593 12 N -0.689 5.689 13 C 0.263 3.737 14 C -0.553 4.553 15 H 0.091 0.909 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.985 3.015 19 H -0.248 1.248 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.007 4.007 23 C -0.049 4.049 24 N 0.031 4.969 25 O -0.252 6.252 26 O -0.076 6.076 27 C 0.061 3.939 28 C -0.107 4.107 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.194 0.806 38 H 0.179 0.821 39 H 0.412 0.588 40 H -0.007 1.007 41 H -0.007 1.007 42 H 0.268 0.732 43 H 0.141 0.859 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.486 -5.159 9.539 31.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.145 4.145 4 C -0.064 4.064 5 N -0.237 5.237 6 C 0.093 3.907 7 C -0.157 4.157 8 C -0.025 4.025 9 C -0.139 4.139 10 C 0.328 3.672 11 O -0.475 6.475 12 N -0.339 5.339 13 C 0.141 3.859 14 C -0.591 4.591 15 H 0.109 0.891 16 C -0.197 4.197 17 N -0.569 5.569 18 Si 0.808 3.192 19 H -0.171 1.171 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.028 4.028 23 C -0.134 4.134 24 N 0.550 4.450 25 O -0.443 6.443 26 O -0.316 6.316 27 C -0.064 4.064 28 C -0.145 4.145 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.211 0.789 38 H 0.197 0.803 39 H 0.249 0.751 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.077 0.923 43 H 0.159 0.841 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.593 -4.752 8.772 30.283 hybrid contribution 1.202 -0.129 0.173 1.222 sum -27.390 -4.881 8.945 29.224 Atomic orbital electron populations 1.21779 0.94548 1.02004 1.01876 1.21168 0.96144 0.95475 0.97962 1.21636 0.92694 0.97355 1.02836 1.22288 0.97503 0.98340 0.88300 1.59466 1.05426 1.17304 1.41538 1.18834 0.91743 0.90499 0.89660 1.22083 0.92232 1.00802 1.00567 1.22002 0.96526 0.89817 0.94195 1.19771 0.91833 1.04925 0.97357 1.18503 0.86912 0.78725 0.83108 1.90778 1.78235 1.46800 1.31699 1.46044 1.07752 1.57857 1.22266 1.18682 0.75305 0.95224 0.96700 1.21617 0.92328 1.39755 1.05414 0.89138 1.26077 0.98232 0.95532 0.99879 1.70142 1.06769 1.45529 1.34484 0.85104 0.78434 0.77630 0.78005 1.17108 1.20767 1.20753 1.20866 0.90096 0.92927 0.98889 1.21049 0.89305 1.10759 0.92287 1.43542 1.01831 0.98406 1.01227 1.94591 1.80561 1.52310 1.16858 1.94513 0.96869 1.55901 1.84341 1.22272 0.97575 0.84792 1.01734 1.21636 0.92606 1.01405 0.98870 0.93165 0.92248 0.92172 0.90217 0.91891 0.89720 0.91481 0.91530 0.78872 0.80340 0.75056 0.98944 0.98929 0.92267 0.84146 0.91554 0.91910 0.89823 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.20 71.98 0.66 -0.41 16 2 C -0.09 -0.69 2.79 -10.72 -0.03 -0.72 16 3 C -0.11 -1.04 5.38 30.64 0.16 -0.87 16 4 C 0.06 0.68 5.10 86.32 0.44 1.12 16 5 N -0.51 -7.98 2.49 -695.43 -1.73 -9.71 16 6 C 0.19 3.51 4.66 38.47 0.18 3.69 16 7 C -0.14 -1.74 8.65 22.36 0.19 -1.54 16 8 C -0.01 -0.11 9.53 22.50 0.21 0.11 16 9 C -0.13 -3.76 5.88 -20.08 -0.12 -3.88 16 10 C 0.54 21.11 7.76 86.69 0.67 21.78 16 11 O -0.59 -29.47 16.34 -4.02 -0.07 -29.54 16 12 N -0.69 -26.77 5.50 -470.03 -2.58 -29.35 16 13 C 0.26 13.70 5.43 85.63 0.46 14.17 16 14 C -0.55 -28.16 9.28 25.60 0.24 -27.93 16 15 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 16 C 0.00 0.14 5.46 84.66 0.46 0.60 16 17 N -0.93 -54.52 13.29 21.45 0.28 -54.23 16 18 Si 0.99 40.20 29.54 68.60 2.03 42.22 16 19 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 20 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 22 C -0.01 -0.21 9.09 22.50 0.20 -0.01 16 23 C -0.05 -1.30 6.85 36.47 0.25 -1.05 16 24 N 0.03 0.95 4.45 -46.26 -0.21 0.74 16 25 O -0.25 -9.01 18.45 18.88 0.35 -8.66 16 26 O -0.08 -2.20 17.11 18.89 0.32 -1.88 16 27 C 0.06 0.72 5.16 86.33 0.45 1.16 16 28 C -0.11 -1.07 5.38 30.64 0.16 -0.91 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.92 8.10 -2.38 -0.02 0.90 16 36 H 0.07 0.45 7.29 -2.39 -0.02 0.43 16 37 H 0.19 0.84 7.09 -2.91 -0.02 0.82 16 38 H 0.18 2.00 6.39 -2.91 -0.02 1.98 16 39 H 0.41 12.03 6.34 -92.71 -0.59 11.44 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.14 4.91 7.19 -2.91 -0.02 4.89 16 44 H 0.07 0.48 7.54 -2.39 -0.02 0.47 16 45 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -75.08 389.46 3.42 -71.67 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.41 Total: 13.44 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 4.61 Total: 5.31 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -4.23 Total: -92.56 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: 0.61 Total: -40.08 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Total: -75.08 3.42 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343896204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.369 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds