Wall clock time and date at job start Wed Apr 1 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99747 * 2 1 4 4 C 1.38750 * 120.06049 * 359.97185 * 3 2 1 5 5 C 1.38120 * 119.94705 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05737 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10614 * 359.69899 * 6 5 4 8 8 C 1.38160 * 120.05972 * 0.55550 * 7 6 5 9 9 C 1.50698 * 120.03146 * 179.74489 * 8 7 6 10 10 C 1.53004 * 115.56102 * 97.07110 * 9 8 7 11 11 C 1.53074 * 117.49505 * 311.36535 * 9 8 7 12 12 C 1.52997 * 117.50045 * 242.76120 * 9 8 7 13 13 H 1.08998 * 117.49967 * 359.97438 * 12 9 8 14 14 N 1.46504 * 117.49924 * 214.97605 * 12 9 8 15 15 C 1.34775 * 119.99615 * 155.08483 * 14 12 9 16 16 O 1.21586 * 120.00335 * 0.02562 * 15 14 12 17 17 N 1.34779 * 119.99880 * 179.97438 * 15 14 12 18 18 C 1.46494 * 120.00159 * 179.72554 * 17 15 14 19 19 C 1.50700 * 109.47424 * 180.02562 * 18 17 15 20 20 O 1.21300 * 119.99693 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00308 * 179.97438 * 19 18 17 22 22 C 1.37106 * 120.00039 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00088 * 0.02562 * 22 21 19 24 24 C 1.38944 * 119.99987 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00288 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 120.00174 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46848 * 89.99861 * 26 24 22 28 28 H 1.48495 * 109.47508 * 209.99908 * 26 24 22 29 29 H 1.48501 * 109.46744 * 330.00178 * 26 24 22 30 30 H 1.08999 * 109.46904 * 60.00202 * 1 2 3 31 31 H 1.09000 * 109.46933 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47322 * 300.00519 * 1 2 3 33 33 H 1.08006 * 120.02638 * 0.05076 * 4 3 2 34 34 H 1.08004 * 119.97049 * 180.02562 * 5 4 3 35 35 H 1.07999 * 119.94578 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.97178 * 180.27808 * 7 6 5 37 37 H 1.09001 * 109.46766 * 203.81987 * 10 9 8 38 38 H 1.08999 * 109.47209 * 323.82024 * 10 9 8 39 39 H 1.08998 * 109.46937 * 83.82025 * 10 9 8 40 40 H 1.08997 * 117.51659 * 145.03151 * 11 9 8 41 41 H 1.09003 * 117.51257 * 359.97438 * 11 9 8 42 42 H 0.96994 * 120.00189 * 335.09330 * 14 12 9 43 43 H 0.97002 * 119.99625 * 0.02562 * 17 15 14 44 44 H 1.08995 * 109.47394 * 300.00330 * 18 17 15 45 45 H 1.09002 * 109.47412 * 60.00709 * 18 17 15 46 46 H 0.96998 * 120.00391 * 0.02562 * 21 19 18 47 47 H 0.96999 * 120.00730 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0006 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6759 -0.0016 7 6 4.0559 2.5171 0.0047 8 6 3.4311 1.2849 0.0000 9 6 4.2537 0.0222 0.0011 10 6 4.4661 -0.6261 1.3706 11 6 5.3955 -0.0783 -1.0135 12 6 4.1238 -0.9066 -1.2077 13 1 3.4431 -0.6046 -2.0036 14 7 4.2124 -2.3487 -0.9653 15 6 3.6317 -3.2128 -1.8213 16 8 3.0347 -2.7955 -2.7948 17 7 3.7135 -4.5395 -1.5986 18 6 3.0772 -5.4785 -2.5257 19 6 3.3145 -6.8897 -2.0531 20 8 3.9520 -7.0912 -1.0410 21 7 2.8174 -7.9278 -2.7543 22 6 3.0337 -9.2117 -2.3246 23 1 3.6021 -9.3911 -1.4240 24 6 2.5218 -10.2819 -3.0478 25 7 2.7286 -11.5124 -2.6357 26 14 1.5393 -9.9716 -4.6061 27 1 2.4576 -9.9436 -5.7728 28 1 0.5420 -11.0568 -4.7869 29 1 0.8375 -8.6674 -4.4972 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2128 2.3204 -0.0002 34 1 1.3339 4.5114 -0.0012 35 1 3.7922 4.6381 -0.0016 36 1 5.1344 2.5752 0.0089 37 1 5.3679 -1.2380 1.3469 38 1 4.5738 0.1507 2.1276 39 1 3.6079 -1.2530 1.6128 40 1 6.2979 -0.6062 -0.7054 41 1 5.5512 0.7686 -1.6819 42 1 4.6888 -2.6817 -0.1888 43 1 4.1901 -4.8724 -0.8221 44 1 2.0055 -5.2833 -2.5620 45 1 3.5036 -5.3519 -3.5208 46 1 2.3073 -7.7667 -3.5634 47 1 2.3709 -12.2596 -3.1404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344842518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:14 Heat of formation + Delta-G solvation = -44.199780 kcal Electronic energy + Delta-G solvation = -29751.738196 eV Core-core repulsion = 25515.141675 eV Total energy + Delta-G solvation = -4236.596521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81352 -39.87191 -38.60581 -38.01512 -37.22037 -34.45624 -33.71087 -33.20845 -31.78409 -30.79225 -30.32815 -28.70399 -27.64789 -27.43743 -24.38884 -23.52265 -22.66611 -21.80545 -20.66103 -19.80803 -19.61202 -18.88679 -18.33924 -17.89564 -16.48164 -16.29274 -16.06211 -15.87269 -15.55574 -15.44961 -15.07044 -14.76585 -14.60051 -14.41834 -14.13302 -13.95009 -13.93975 -13.20838 -13.12130 -13.09811 -12.69718 -12.57676 -12.46582 -12.35877 -12.14918 -12.13226 -12.05128 -11.82911 -11.35376 -11.32575 -11.21745 -10.94964 -10.63286 -10.11325 -10.06432 -10.02543 -9.68620 -9.27630 -8.95242 -8.75129 -8.57618 -8.31830 -8.28767 -6.39756 -3.92305 0.99490 1.15968 2.71321 3.00656 3.05394 3.07615 3.13381 3.21433 3.44944 3.58011 3.72899 4.04458 4.22276 4.37294 4.51018 4.56920 4.62942 4.69358 4.75721 4.82353 4.90492 4.93258 5.02951 5.13258 5.15390 5.30404 5.37199 5.48793 5.52092 5.59088 5.63916 5.66446 5.75344 5.80382 5.88047 5.88730 5.99061 6.07240 6.12170 6.23638 6.48570 6.55978 6.67012 7.08531 7.16796 7.46258 8.01579 8.20738 8.45737 8.77441 8.82929 9.31105 9.65014 10.72410 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.001975 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.897126 B =14174.252749 C =14742.025813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.141 3.859 4 C -0.212 4.212 5 C -0.082 4.082 6 C -0.161 4.161 7 C -0.071 4.071 8 C -0.080 4.080 9 C -0.090 4.090 10 C -0.111 4.111 11 C -0.186 4.186 12 C 0.135 3.865 13 H 0.136 0.864 14 N -0.715 5.715 15 C 0.711 3.289 16 O -0.596 6.596 17 N -0.725 5.725 18 C 0.127 3.873 19 C 0.439 3.561 20 O -0.579 6.579 21 N -0.577 5.577 22 C -0.309 4.309 23 H 0.121 0.879 24 C 0.045 3.955 25 N -0.875 5.875 26 Si 0.879 3.121 27 H -0.269 1.269 28 H -0.275 1.275 29 H -0.267 1.267 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.397 0.603 43 H 0.408 0.592 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.374 0.626 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 30.490 5.248 30.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.213 6.213 3 C 0.095 3.905 4 C -0.230 4.230 5 C -0.100 4.100 6 C -0.179 4.179 7 C -0.089 4.089 8 C -0.081 4.081 9 C -0.092 4.092 10 C -0.168 4.168 11 C -0.225 4.225 12 C 0.028 3.972 13 H 0.153 0.847 14 N -0.368 5.368 15 C 0.411 3.589 16 O -0.474 6.474 17 N -0.382 5.382 18 C -0.002 4.002 19 C 0.225 3.775 20 O -0.464 6.464 21 N -0.215 5.215 22 C -0.438 4.438 23 H 0.139 0.861 24 C -0.159 4.159 25 N -0.514 5.514 26 Si 0.705 3.295 27 H -0.194 1.194 28 H -0.200 1.200 29 H -0.192 1.192 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.232 0.768 43 H 0.245 0.755 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.208 0.792 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.993 30.196 4.978 30.620 hybrid contribution -0.693 -0.072 -0.505 0.861 sum -1.686 30.125 4.473 30.502 Atomic orbital electron populations 1.23075 0.78538 1.04243 1.00962 1.86214 1.21050 1.26115 1.87925 1.18908 0.91669 0.84554 0.95320 1.21249 1.00101 0.92372 1.09327 1.20932 0.94732 0.96906 0.97473 1.21014 0.93886 0.98298 1.04711 1.20826 1.00033 0.90728 0.97357 1.18343 0.89683 0.93671 1.06411 1.20453 1.00365 0.95336 0.93020 1.21248 1.01776 1.00200 0.93570 1.23810 0.93573 1.03179 1.01910 1.21382 0.99416 0.77658 0.98761 0.84677 1.44346 1.59139 1.04570 1.28697 1.15736 0.79571 0.80859 0.82764 1.90891 1.48307 1.77849 1.30383 1.44731 1.59323 1.03550 1.30641 1.20791 0.98624 0.87604 0.93144 1.19671 0.85444 0.85704 0.86680 1.90536 1.44353 1.84908 1.26559 1.42116 1.48439 1.06546 1.24364 1.19435 1.33516 0.79173 1.11661 0.86101 1.25065 0.97633 0.94925 0.98327 1.69614 1.44412 0.98043 1.39323 0.86671 0.80618 0.78714 0.83497 1.19391 1.20016 1.19198 0.92702 0.88089 0.92873 0.85485 0.85970 0.85929 0.85299 0.92143 0.91999 0.91535 0.88088 0.88003 0.76807 0.75506 0.89937 0.89860 0.79233 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -3.39 9.59 -19.43 -0.19 -3.58 16 3 C 0.14 1.47 6.62 -39.22 -0.26 1.21 16 4 C -0.21 -1.84 9.04 -39.44 -0.36 -2.20 16 5 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 6 C -0.16 -1.19 10.04 -39.56 -0.40 -1.59 16 7 C -0.07 -0.58 9.39 -39.61 -0.37 -0.95 16 8 C -0.08 -0.79 4.99 -104.47 -0.52 -1.31 16 9 C -0.09 -0.86 1.80 -155.62 -0.28 -1.14 16 10 C -0.11 -0.95 8.87 37.16 0.33 -0.62 16 11 C -0.19 -1.65 9.50 -26.69 -0.25 -1.90 16 12 C 0.14 1.58 5.68 -67.93 -0.39 1.19 16 13 H 0.14 1.91 7.40 -51.93 -0.38 1.53 16 14 N -0.71 -8.92 5.35 -58.67 -0.31 -9.23 16 15 C 0.71 11.48 8.57 -86.92 -0.74 10.73 16 16 O -0.60 -11.50 15.91 5.29 0.08 -11.42 16 17 N -0.72 -11.88 5.53 -66.42 -0.37 -12.25 16 18 C 0.13 2.25 6.15 -5.20 -0.03 2.22 16 19 C 0.44 9.70 7.85 -10.99 -0.09 9.62 16 20 O -0.58 -14.64 15.24 5.54 0.08 -14.56 16 21 N -0.58 -13.47 5.09 -10.96 -0.06 -13.52 16 22 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 23 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 24 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 25 N -0.87 -25.02 13.96 55.50 0.77 -24.24 16 26 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 27 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 28 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 29 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 30 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 33 H 0.13 0.89 6.30 -52.48 -0.33 0.55 16 34 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 35 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.82 8.00 -52.48 -0.42 0.40 16 37 H 0.06 0.44 7.54 -51.93 -0.39 0.05 16 38 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.80 8.06 -51.93 -0.42 0.38 16 41 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 42 H 0.40 4.09 7.65 -40.82 -0.31 3.78 16 43 H 0.41 6.51 7.45 -40.82 -0.30 6.20 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 47 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -34.09 397.19 -8.25 -42.34 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -6.52 Total: 18.25 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -3.01 Total: 7.87 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.04 Total: -59.24 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.02 Total: -29.55 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.09 -8.25 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344842518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.864 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds