Wall clock time and date at job start Wed Apr 1 2020 05:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99747 * 2 1 4 4 C 1.38750 * 120.06049 * 359.97185 * 3 2 1 5 5 C 1.38120 * 119.94705 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05737 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10614 * 359.69899 * 6 5 4 8 8 C 1.38160 * 120.05972 * 0.55550 * 7 6 5 9 9 C 1.50698 * 120.03146 * 179.74489 * 8 7 6 10 10 C 1.53004 * 115.56102 * 97.07110 * 9 8 7 11 11 C 1.53074 * 117.49505 * 311.36535 * 9 8 7 12 12 C 1.52997 * 117.50045 * 242.76120 * 9 8 7 13 13 H 1.08998 * 117.49967 * 359.97438 * 12 9 8 14 14 N 1.46504 * 117.49924 * 214.97605 * 12 9 8 15 15 C 1.34775 * 119.99615 * 155.08483 * 14 12 9 16 16 O 1.21586 * 120.00335 * 0.02562 * 15 14 12 17 17 N 1.34779 * 119.99880 * 179.97438 * 15 14 12 18 18 C 1.46494 * 120.00159 * 179.72554 * 17 15 14 19 19 C 1.50700 * 109.47424 * 180.02562 * 18 17 15 20 20 O 1.21300 * 119.99693 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00308 * 179.97438 * 19 18 17 22 22 C 1.37106 * 120.00039 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00088 * 0.02562 * 22 21 19 24 24 C 1.38944 * 119.99987 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00288 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 120.00174 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46848 * 89.99861 * 26 24 22 28 28 H 1.48495 * 109.47508 * 209.99908 * 26 24 22 29 29 H 1.48501 * 109.46744 * 330.00178 * 26 24 22 30 30 H 1.08999 * 109.46904 * 60.00202 * 1 2 3 31 31 H 1.09000 * 109.46933 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47322 * 300.00519 * 1 2 3 33 33 H 1.08006 * 120.02638 * 0.05076 * 4 3 2 34 34 H 1.08004 * 119.97049 * 180.02562 * 5 4 3 35 35 H 1.07999 * 119.94578 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.97178 * 180.27808 * 7 6 5 37 37 H 1.09001 * 109.46766 * 203.81987 * 10 9 8 38 38 H 1.08999 * 109.47209 * 323.82024 * 10 9 8 39 39 H 1.08998 * 109.46937 * 83.82025 * 10 9 8 40 40 H 1.08997 * 117.51659 * 145.03151 * 11 9 8 41 41 H 1.09003 * 117.51257 * 359.97438 * 11 9 8 42 42 H 0.96994 * 120.00189 * 335.09330 * 14 12 9 43 43 H 0.97002 * 119.99625 * 0.02562 * 17 15 14 44 44 H 1.08995 * 109.47394 * 300.00330 * 18 17 15 45 45 H 1.09002 * 109.47412 * 60.00709 * 18 17 15 46 46 H 0.96998 * 120.00391 * 0.02562 * 21 19 18 47 47 H 0.96999 * 120.00730 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0006 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6759 -0.0016 7 6 4.0559 2.5171 0.0047 8 6 3.4311 1.2849 0.0000 9 6 4.2537 0.0222 0.0011 10 6 4.4661 -0.6261 1.3706 11 6 5.3955 -0.0783 -1.0135 12 6 4.1238 -0.9066 -1.2077 13 1 3.4431 -0.6046 -2.0036 14 7 4.2124 -2.3487 -0.9653 15 6 3.6317 -3.2128 -1.8213 16 8 3.0347 -2.7955 -2.7948 17 7 3.7135 -4.5395 -1.5986 18 6 3.0772 -5.4785 -2.5257 19 6 3.3145 -6.8897 -2.0531 20 8 3.9520 -7.0912 -1.0410 21 7 2.8174 -7.9278 -2.7543 22 6 3.0337 -9.2117 -2.3246 23 1 3.6021 -9.3911 -1.4240 24 6 2.5218 -10.2819 -3.0478 25 7 2.7286 -11.5124 -2.6357 26 14 1.5393 -9.9716 -4.6061 27 1 2.4576 -9.9436 -5.7728 28 1 0.5420 -11.0568 -4.7869 29 1 0.8375 -8.6674 -4.4972 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2128 2.3204 -0.0002 34 1 1.3339 4.5114 -0.0012 35 1 3.7922 4.6381 -0.0016 36 1 5.1344 2.5752 0.0089 37 1 5.3679 -1.2380 1.3469 38 1 4.5738 0.1507 2.1276 39 1 3.6079 -1.2530 1.6128 40 1 6.2979 -0.6062 -0.7054 41 1 5.5512 0.7686 -1.6819 42 1 4.6888 -2.6817 -0.1888 43 1 4.1901 -4.8724 -0.8221 44 1 2.0055 -5.2833 -2.5620 45 1 3.5036 -5.3519 -3.5208 46 1 2.3073 -7.7667 -3.5634 47 1 2.3709 -12.2596 -3.1404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344842518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:13 Heat of formation + Delta-G solvation = -69.094486 kcal Electronic energy + Delta-G solvation = -29752.817712 eV Core-core repulsion = 25515.141675 eV Total energy + Delta-G solvation = -4237.676036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60291 -41.05759 -40.19082 -39.00326 -37.94424 -36.27157 -35.28424 -34.27594 -33.80930 -31.49683 -30.95398 -29.54054 -29.06582 -28.10957 -26.24406 -24.15842 -23.50625 -22.63261 -21.78029 -21.46447 -20.62068 -20.50966 -19.66704 -18.76179 -17.60514 -17.40864 -16.98357 -16.88033 -16.83905 -16.59596 -16.54133 -15.92105 -15.69707 -15.54658 -15.33796 -15.05067 -14.84798 -14.59744 -14.31089 -14.01969 -13.95669 -13.78654 -13.72842 -13.44856 -13.15854 -13.03223 -12.96015 -12.70179 -12.44358 -12.40549 -12.14661 -12.00006 -11.97725 -11.65557 -11.57785 -11.42980 -10.86114 -10.64821 -10.34692 -10.27364 -9.89841 -9.48304 -9.02330 -8.45162 -6.07081 0.38314 0.53612 1.31434 1.34441 1.43750 1.53662 1.78960 2.04806 2.20750 2.44418 2.76333 2.84104 2.86944 3.11073 3.24474 3.67133 3.71681 3.91295 3.99508 4.02698 4.13575 4.17840 4.28454 4.34668 4.39658 4.44802 4.45495 4.56540 4.69240 4.72706 4.78788 4.87224 4.89517 4.93245 5.00944 5.16534 5.29082 5.31360 5.45232 5.48821 5.52521 5.57125 5.64219 5.88524 5.91952 5.95228 6.49196 6.51498 6.78413 7.00825 7.28916 7.52817 7.78416 8.71175 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.001975 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.897126 B =14174.252749 C =14742.025813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.327 6.327 3 C 0.117 3.883 4 C -0.221 4.221 5 C -0.086 4.086 6 C -0.162 4.162 7 C -0.075 4.075 8 C -0.100 4.100 9 C -0.077 4.077 10 C -0.110 4.110 11 C -0.163 4.163 12 C 0.107 3.893 13 H 0.107 0.893 14 N -0.699 5.699 15 C 0.711 3.289 16 O -0.628 6.628 17 N -0.726 5.726 18 C 0.139 3.861 19 C 0.447 3.553 20 O -0.614 6.614 21 N -0.578 5.578 22 C -0.330 4.330 23 H 0.064 0.936 24 C -0.009 4.009 25 N -0.925 5.925 26 Si 0.958 3.042 27 H -0.256 1.256 28 H -0.273 1.273 29 H -0.233 1.233 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.409 0.591 43 H 0.410 0.590 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.392 0.608 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 33.551 4.131 33.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.241 6.241 3 C 0.071 3.929 4 C -0.240 4.240 5 C -0.104 4.104 6 C -0.180 4.180 7 C -0.093 4.093 8 C -0.101 4.101 9 C -0.078 4.078 10 C -0.167 4.167 11 C -0.202 4.202 12 C 0.000 4.000 13 H 0.124 0.876 14 N -0.352 5.352 15 C 0.411 3.589 16 O -0.509 6.509 17 N -0.384 5.384 18 C 0.011 3.989 19 C 0.234 3.766 20 O -0.500 6.500 21 N -0.218 5.218 22 C -0.459 4.459 23 H 0.082 0.918 24 C -0.209 4.209 25 N -0.565 5.565 26 Si 0.778 3.222 27 H -0.181 1.181 28 H -0.198 1.198 29 H -0.156 1.156 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.245 0.755 43 H 0.247 0.753 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.228 0.772 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.261 33.306 3.896 33.557 hybrid contribution -0.544 -0.924 -0.023 1.072 sum -1.806 32.383 3.873 32.663 Atomic orbital electron populations 1.23195 0.77517 1.04530 1.01993 1.86159 1.22388 1.27145 1.88381 1.19198 0.92278 0.84779 0.96622 1.21480 1.00817 0.92404 1.09250 1.21286 0.95281 0.97310 0.96516 1.21369 0.93965 0.99143 1.03478 1.21079 1.01068 0.90310 0.96793 1.18559 0.89728 0.94358 1.07484 1.20456 1.00163 0.94518 0.92698 1.21257 1.01762 1.00371 0.93279 1.23879 0.92944 1.02286 1.01071 1.21345 1.01468 0.77229 0.99940 0.87554 1.44205 1.58166 1.04670 1.28201 1.15800 0.79510 0.80775 0.82836 1.90866 1.49877 1.78262 1.31940 1.44676 1.59481 1.03637 1.30561 1.20682 0.99953 0.84423 0.93872 1.20481 0.83392 0.87194 0.85530 1.90524 1.45402 1.85918 1.28121 1.41916 1.49333 1.05236 1.25291 1.19024 1.34424 0.81708 1.10778 0.91813 1.26064 0.98403 0.93974 1.02412 1.69775 1.45827 0.99433 1.41489 0.85450 0.78865 0.80156 0.77687 1.18082 1.19810 1.15636 0.92122 0.88222 0.91352 0.84383 0.83640 0.83496 0.83524 0.90705 0.91239 0.93027 0.86585 0.86929 0.75474 0.75292 0.88233 0.87992 0.77232 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.33 -7.53 9.59 -92.42 -0.89 -8.42 16 3 C 0.12 2.40 6.62 22.51 0.15 2.55 16 4 C -0.22 -3.61 9.04 22.36 0.20 -3.41 16 5 C -0.09 -1.12 10.04 22.25 0.22 -0.89 16 6 C -0.16 -1.97 10.04 22.28 0.22 -1.75 16 7 C -0.07 -1.06 9.39 22.25 0.21 -0.85 16 8 C -0.10 -1.87 4.99 -19.77 -0.10 -1.97 16 9 C -0.08 -1.38 1.80 -52.90 -0.09 -1.47 16 10 C -0.11 -1.75 8.87 71.98 0.64 -1.11 16 11 C -0.16 -2.58 9.50 30.62 0.29 -2.29 16 12 C 0.11 2.45 5.68 44.99 0.26 2.71 16 13 H 0.11 3.10 7.40 -2.39 -0.02 3.08 16 14 N -0.70 -17.05 5.35 -457.81 -2.45 -19.50 16 15 C 0.71 22.56 8.57 179.05 1.53 24.10 16 16 O -0.63 -24.03 15.91 -3.99 -0.06 -24.09 16 17 N -0.73 -23.24 5.53 -482.31 -2.67 -25.91 16 18 C 0.14 4.72 6.15 85.63 0.53 5.25 16 19 C 0.45 19.67 7.85 87.66 0.69 20.36 16 20 O -0.61 -31.76 15.24 -3.09 -0.05 -31.81 16 21 N -0.58 -26.76 5.09 -306.98 -1.56 -28.33 16 22 C -0.33 -18.82 10.16 84.04 0.85 -17.96 16 23 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 24 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 25 N -0.93 -54.48 13.96 21.66 0.30 -54.18 16 26 Si 0.96 38.32 27.74 68.60 1.90 40.22 16 27 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 28 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 29 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 30 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 33 H 0.14 1.79 6.30 -2.91 -0.02 1.77 16 34 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.15 1.45 8.00 -2.91 -0.02 1.43 16 37 H 0.07 0.95 7.54 -2.39 -0.02 0.93 16 38 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.12 1.51 8.06 -2.39 -0.02 1.49 16 41 H 0.11 1.56 8.08 -2.39 -0.02 1.54 16 42 H 0.41 8.04 7.65 -92.71 -0.71 7.33 16 43 H 0.41 12.94 7.45 -92.71 -0.69 12.25 16 44 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 46 H 0.39 15.29 5.76 -92.71 -0.53 14.75 16 47 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -77.84 397.19 0.75 -77.09 By element: Atomic # 1 Polarization: 51.16 SS G_CDS: -0.96 Total: 50.20 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 7.18 Total: 24.72 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -6.38 Total: -127.91 kcal Atomic # 8 Polarization: -63.33 SS G_CDS: -1.00 Total: -64.32 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.22 kcal Total: -77.84 0.75 -77.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344842518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.995 kcal (2) G-P(sol) polarization free energy of solvation -77.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds