Wall clock time and date at job start Wed Apr 1 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 117.00251 * 2 1 4 4 C 1.38756 * 120.05290 * 0.24504 * 3 2 1 5 5 C 1.38129 * 119.94094 * 180.32588 * 4 3 2 6 6 C 1.38286 * 120.05496 * 359.67880 * 5 4 3 7 7 C 1.38243 * 120.11160 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05762 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.02939 * 179.97438 * 8 7 6 10 10 C 1.52993 * 115.55092 * 245.48348 * 9 8 7 11 11 C 1.53004 * 117.49723 * 31.15921 * 9 8 7 12 12 C 1.52998 * 60.00380 * 107.50776 * 11 9 8 13 13 H 1.08999 * 117.50256 * 252.51135 * 12 11 9 14 14 N 1.46495 * 117.50114 * 107.48650 * 12 11 9 15 15 C 1.34773 * 120.00625 * 136.37842 * 14 12 11 16 16 O 1.21593 * 119.99324 * 359.97438 * 15 14 12 17 17 N 1.34772 * 120.00506 * 180.02562 * 15 14 12 18 18 C 1.46499 * 119.99790 * 180.02562 * 17 15 14 19 19 C 1.50704 * 109.46998 * 180.02562 * 18 17 15 20 20 O 1.21291 * 120.00162 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99889 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99584 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00092 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99744 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99935 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99892 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47017 * 89.99922 * 26 24 22 28 28 H 1.48500 * 109.46945 * 209.99815 * 26 24 22 29 29 H 1.48492 * 109.47267 * 329.99979 * 26 24 22 30 30 H 1.09005 * 109.46763 * 60.00659 * 1 2 3 31 31 H 1.08996 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47368 * 300.00493 * 1 2 3 33 33 H 1.07994 * 120.03340 * 0.02562 * 4 3 2 34 34 H 1.07993 * 119.97105 * 179.70366 * 5 4 3 35 35 H 1.07994 * 119.94285 * 180.02562 * 6 5 4 36 36 H 1.08008 * 119.97474 * 180.02562 * 7 6 5 37 37 H 1.09006 * 109.46961 * 149.29302 * 10 9 8 38 38 H 1.08997 * 109.47326 * 29.29020 * 10 9 8 39 39 H 1.09000 * 109.47184 * 269.29273 * 10 9 8 40 40 H 1.09002 * 117.49407 * 215.00042 * 11 9 8 41 41 H 1.08996 * 117.49472 * 359.97438 * 11 9 8 42 42 H 0.97004 * 120.00012 * 316.37852 * 14 12 11 43 43 H 0.96998 * 119.99822 * 0.02562 * 17 15 14 44 44 H 1.09004 * 109.47232 * 299.99634 * 18 17 15 45 45 H 1.08995 * 109.47670 * 60.00300 * 18 17 15 46 46 H 0.96995 * 120.00188 * 0.02562 * 21 19 18 47 47 H 0.96996 * 119.99925 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0051 5 6 1.9210 3.6047 -0.0017 6 6 3.3020 3.6757 -0.0069 7 6 4.0560 2.5170 -0.0059 8 6 3.4312 1.2848 -0.0001 9 6 4.2538 0.0220 0.0004 10 6 4.1295 -0.8471 -1.2525 11 6 5.6150 0.0660 0.6976 12 6 4.4513 -0.6923 1.3391 13 1 3.9860 -0.2491 2.2195 14 7 4.5069 -2.1561 1.3228 15 6 4.1765 -2.8554 2.4265 16 8 3.8327 -2.2712 3.4360 17 7 4.2281 -4.2021 2.4117 18 6 3.8684 -4.9621 3.6114 19 6 4.0100 -6.4365 3.3332 20 8 4.3749 -6.8151 2.2402 21 7 3.7310 -7.3343 4.2989 22 6 3.8593 -8.6756 4.0456 23 1 4.1842 -9.0127 3.0724 24 6 3.5712 -9.6012 5.0411 25 7 3.1754 -9.1910 6.2252 26 14 3.7466 -11.4287 4.6962 27 1 5.1251 -11.8660 5.0339 28 1 2.7712 -12.1842 5.5227 29 1 3.4832 -11.6886 3.2582 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2130 2.3204 0.0096 34 1 1.3342 4.5113 -0.0025 35 1 3.7923 4.6379 -0.0118 36 1 5.1346 2.5750 -0.0095 37 1 5.0682 -1.3741 -1.4237 38 1 3.9054 -0.2154 -2.1121 39 1 3.3263 -1.5709 -1.1144 40 1 6.4220 -0.5243 0.2635 41 1 5.9157 1.0083 1.1554 42 1 4.7814 -2.6222 0.5176 43 1 4.5034 -4.6680 1.6068 44 1 4.5305 -4.6822 4.4309 45 1 2.8370 -4.7412 3.8859 46 1 3.4389 -7.0315 5.1729 47 1 2.9739 -9.8372 6.9200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344842522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:20 Heat of formation + Delta-G solvation = -51.275046 kcal Electronic energy + Delta-G solvation = -29598.859322 eV Core-core repulsion = 25361.955994 eV Total energy + Delta-G solvation = -4236.903327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79583 -39.81701 -38.50359 -37.94052 -37.16817 -34.37997 -33.63537 -33.15907 -31.35691 -30.71811 -30.37234 -28.63742 -27.56288 -27.31866 -24.51872 -23.50911 -22.65891 -21.79130 -20.62621 -19.77941 -19.53538 -18.59372 -18.14666 -17.84606 -16.36416 -16.32135 -16.07886 -15.88149 -15.52111 -15.35492 -14.89604 -14.68263 -14.54451 -14.36543 -14.02013 -13.99428 -13.90011 -13.43516 -13.20378 -13.02739 -12.64916 -12.55289 -12.25159 -12.15461 -12.07675 -11.99075 -11.72876 -11.61694 -11.35639 -11.30698 -11.11454 -10.94172 -10.44987 -10.30652 -10.08033 -9.98720 -9.61962 -9.28797 -8.87780 -8.60411 -8.55219 -8.23568 -8.08111 -6.49774 -3.91723 1.01343 1.17857 2.77550 3.07983 3.12721 3.22961 3.25201 3.28463 3.48906 3.74027 3.79839 4.09716 4.30704 4.45654 4.54103 4.58227 4.70122 4.77557 4.82607 4.91130 4.92591 4.92821 5.05007 5.15330 5.18975 5.28535 5.37421 5.52556 5.54623 5.64600 5.66424 5.76407 5.84019 5.98304 6.02271 6.03830 6.09334 6.10667 6.15738 6.26387 6.50515 6.59819 6.78520 7.14707 7.17354 7.47557 7.94274 8.27254 8.47179 8.83762 9.06368 9.41522 9.89494 10.67155 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.001847 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.262584 B =15152.229346 C =15540.315246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.142 3.858 4 C -0.211 4.211 5 C -0.083 4.083 6 C -0.159 4.159 7 C -0.074 4.074 8 C -0.078 4.078 9 C -0.089 4.089 10 C -0.110 4.110 11 C -0.187 4.187 12 C 0.132 3.868 13 H 0.136 0.864 14 N -0.716 5.716 15 C 0.709 3.291 16 O -0.596 6.596 17 N -0.724 5.724 18 C 0.129 3.871 19 C 0.429 3.571 20 O -0.598 6.598 21 N -0.550 5.550 22 C -0.304 4.304 23 H 0.105 0.895 24 C 0.025 3.975 25 N -0.895 5.895 26 Si 0.933 3.067 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.269 1.269 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.397 0.603 43 H 0.406 0.594 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.396 0.604 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 24.910 -13.458 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.096 3.904 4 C -0.230 4.230 5 C -0.101 4.101 6 C -0.178 4.178 7 C -0.092 4.092 8 C -0.079 4.079 9 C -0.091 4.091 10 C -0.167 4.167 11 C -0.226 4.226 12 C 0.025 3.975 13 H 0.153 0.847 14 N -0.368 5.368 15 C 0.409 3.591 16 O -0.474 6.474 17 N -0.381 5.381 18 C 0.001 3.999 19 C 0.215 3.785 20 O -0.485 6.485 21 N -0.185 5.185 22 C -0.434 4.434 23 H 0.123 0.877 24 C -0.178 4.178 25 N -0.535 5.535 26 Si 0.760 3.240 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.193 1.193 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.232 0.768 43 H 0.244 0.756 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.230 0.770 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.846 24.787 -13.027 28.063 hybrid contribution -0.188 -0.931 -0.279 0.990 sum -2.034 23.856 -13.307 27.392 Atomic orbital electron populations 1.23079 0.78585 1.04199 1.01035 1.86189 1.21018 1.26276 1.88023 1.18865 0.91605 0.84481 0.95466 1.21242 1.00074 0.92371 1.09306 1.20930 0.94732 0.96903 0.97561 1.21014 0.93887 0.98299 1.04575 1.20864 1.00093 0.90764 0.97506 1.18340 0.89754 0.93653 1.06180 1.20469 0.97698 0.95546 0.95338 1.21236 1.01952 0.98779 0.94723 1.23798 0.91853 1.02947 1.03977 1.21433 1.00561 0.78934 0.96613 0.84656 1.44352 1.73050 1.05222 1.14221 1.15763 0.78341 0.81576 0.83393 1.90897 1.54983 1.69436 1.32123 1.44748 1.72430 1.03957 1.16968 1.20781 1.01661 0.90328 0.87162 1.19773 0.85579 0.86927 0.86229 1.90489 1.53477 1.80246 1.24246 1.41788 1.57582 1.06122 1.12963 1.19725 1.43139 0.80475 1.00042 0.87698 1.25329 0.96666 1.00952 0.94847 1.69618 1.44720 1.35864 1.03286 0.85809 0.78097 0.81486 0.78604 1.20288 1.20821 1.19350 0.92858 0.88102 0.92673 0.85490 0.85961 0.85912 0.85215 0.92241 0.92134 0.91336 0.88062 0.87921 0.76820 0.75626 0.89995 0.90019 0.77010 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.30 -3.37 9.55 -19.42 -0.19 -3.56 16 3 C 0.14 1.50 6.61 -39.22 -0.26 1.24 16 4 C -0.21 -1.87 9.04 -39.43 -0.36 -2.23 16 5 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 6 C -0.16 -1.23 10.04 -39.56 -0.40 -1.63 16 7 C -0.07 -0.63 9.22 -39.61 -0.37 -1.00 16 8 C -0.08 -0.79 5.07 -104.47 -0.53 -1.32 16 9 C -0.09 -0.88 1.89 -155.66 -0.29 -1.17 16 10 C -0.11 -0.99 8.38 37.15 0.31 -0.68 16 11 C -0.19 -1.70 9.29 -26.73 -0.25 -1.95 16 12 C 0.13 1.59 6.11 -67.93 -0.42 1.18 16 13 H 0.14 1.95 7.40 -51.93 -0.38 1.57 16 14 N -0.72 -9.31 5.35 -58.68 -0.31 -9.63 16 15 C 0.71 12.02 8.57 -86.93 -0.74 11.28 16 16 O -0.60 -12.08 15.91 5.28 0.08 -11.99 16 17 N -0.72 -12.50 5.53 -66.41 -0.37 -12.86 16 18 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 19 C 0.43 9.94 7.85 -10.98 -0.09 9.86 16 20 O -0.60 -15.37 15.24 5.55 0.08 -15.28 16 21 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 22 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 23 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.65 5.50 -17.46 -0.10 0.56 16 25 N -0.89 -24.00 13.05 55.50 0.72 -23.27 16 26 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 30 H 0.05 0.32 7.67 -51.93 -0.40 -0.07 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 33 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 34 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.87 7.02 -52.48 -0.37 0.50 16 37 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 38 H 0.06 0.53 8.03 -51.93 -0.42 0.11 16 39 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.10 0.83 8.03 -51.93 -0.42 0.41 16 41 H 0.10 0.82 7.13 -51.93 -0.37 0.45 16 42 H 0.40 4.28 7.85 -40.82 -0.32 3.96 16 43 H 0.41 6.78 7.45 -40.82 -0.30 6.48 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -33.18 398.37 -8.59 -41.77 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -6.48 Total: 18.78 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -3.06 Total: 8.24 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.01 Total: -59.55 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.02 Total: -30.83 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.18 -8.59 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344842522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.503 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds