Wall clock time and date at job start Wed Apr 1 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 117.00251 * 2 1 4 4 C 1.38756 * 120.05290 * 0.24504 * 3 2 1 5 5 C 1.38129 * 119.94094 * 180.32588 * 4 3 2 6 6 C 1.38286 * 120.05496 * 359.67880 * 5 4 3 7 7 C 1.38243 * 120.11160 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05762 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.02939 * 179.97438 * 8 7 6 10 10 C 1.52993 * 115.55092 * 245.48348 * 9 8 7 11 11 C 1.53004 * 117.49723 * 31.15921 * 9 8 7 12 12 C 1.52998 * 60.00380 * 107.50776 * 11 9 8 13 13 H 1.08999 * 117.50256 * 252.51135 * 12 11 9 14 14 N 1.46495 * 117.50114 * 107.48650 * 12 11 9 15 15 C 1.34773 * 120.00625 * 136.37842 * 14 12 11 16 16 O 1.21593 * 119.99324 * 359.97438 * 15 14 12 17 17 N 1.34772 * 120.00506 * 180.02562 * 15 14 12 18 18 C 1.46499 * 119.99790 * 180.02562 * 17 15 14 19 19 C 1.50704 * 109.46998 * 180.02562 * 18 17 15 20 20 O 1.21291 * 120.00162 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99889 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99584 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00092 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99744 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99935 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99892 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47017 * 89.99922 * 26 24 22 28 28 H 1.48500 * 109.46945 * 209.99815 * 26 24 22 29 29 H 1.48492 * 109.47267 * 329.99979 * 26 24 22 30 30 H 1.09005 * 109.46763 * 60.00659 * 1 2 3 31 31 H 1.08996 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47368 * 300.00493 * 1 2 3 33 33 H 1.07994 * 120.03340 * 0.02562 * 4 3 2 34 34 H 1.07993 * 119.97105 * 179.70366 * 5 4 3 35 35 H 1.07994 * 119.94285 * 180.02562 * 6 5 4 36 36 H 1.08008 * 119.97474 * 180.02562 * 7 6 5 37 37 H 1.09006 * 109.46961 * 149.29302 * 10 9 8 38 38 H 1.08997 * 109.47326 * 29.29020 * 10 9 8 39 39 H 1.09000 * 109.47184 * 269.29273 * 10 9 8 40 40 H 1.09002 * 117.49407 * 215.00042 * 11 9 8 41 41 H 1.08996 * 117.49472 * 359.97438 * 11 9 8 42 42 H 0.97004 * 120.00012 * 316.37852 * 14 12 11 43 43 H 0.96998 * 119.99822 * 0.02562 * 17 15 14 44 44 H 1.09004 * 109.47232 * 299.99634 * 18 17 15 45 45 H 1.08995 * 109.47670 * 60.00300 * 18 17 15 46 46 H 0.96995 * 120.00188 * 0.02562 * 21 19 18 47 47 H 0.96996 * 119.99925 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0051 5 6 1.9210 3.6047 -0.0017 6 6 3.3020 3.6757 -0.0069 7 6 4.0560 2.5170 -0.0059 8 6 3.4312 1.2848 -0.0001 9 6 4.2538 0.0220 0.0004 10 6 4.1295 -0.8471 -1.2525 11 6 5.6150 0.0660 0.6976 12 6 4.4513 -0.6923 1.3391 13 1 3.9860 -0.2491 2.2195 14 7 4.5069 -2.1561 1.3228 15 6 4.1765 -2.8554 2.4265 16 8 3.8327 -2.2712 3.4360 17 7 4.2281 -4.2021 2.4117 18 6 3.8684 -4.9621 3.6114 19 6 4.0100 -6.4365 3.3332 20 8 4.3749 -6.8151 2.2402 21 7 3.7310 -7.3343 4.2989 22 6 3.8593 -8.6756 4.0456 23 1 4.1842 -9.0127 3.0724 24 6 3.5712 -9.6012 5.0411 25 7 3.1754 -9.1910 6.2252 26 14 3.7466 -11.4287 4.6962 27 1 5.1251 -11.8660 5.0339 28 1 2.7712 -12.1842 5.5227 29 1 3.4832 -11.6886 3.2582 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2130 2.3204 0.0096 34 1 1.3342 4.5113 -0.0025 35 1 3.7923 4.6379 -0.0118 36 1 5.1346 2.5750 -0.0095 37 1 5.0682 -1.3741 -1.4237 38 1 3.9054 -0.2154 -2.1121 39 1 3.3263 -1.5709 -1.1144 40 1 6.4220 -0.5243 0.2635 41 1 5.9157 1.0083 1.1554 42 1 4.7814 -2.6222 0.5176 43 1 4.5034 -4.6680 1.6068 44 1 4.5305 -4.6822 4.4309 45 1 2.8370 -4.7412 3.8859 46 1 3.4389 -7.0315 5.1729 47 1 2.9739 -9.8372 6.9200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344842522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:19 Heat of formation + Delta-G solvation = -74.366921 kcal Electronic energy + Delta-G solvation = -29599.860661 eV Core-core repulsion = 25361.955994 eV Total energy + Delta-G solvation = -4237.904666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60841 -41.04262 -40.08401 -39.03622 -37.92451 -36.23029 -35.27243 -34.28339 -33.35198 -31.45843 -31.01992 -29.46662 -28.96950 -28.09775 -26.40475 -24.17073 -23.54490 -22.63350 -21.80983 -21.36271 -20.52958 -20.14720 -19.70869 -18.79241 -17.54545 -17.41659 -17.00569 -16.83822 -16.79151 -16.60952 -16.41444 -16.05532 -15.65572 -15.54419 -15.38866 -15.21739 -14.93065 -14.58682 -14.04500 -13.94173 -13.70256 -13.70123 -13.53901 -13.44837 -13.17228 -12.95560 -12.90035 -12.72543 -12.45108 -12.33106 -12.19291 -12.12304 -11.98048 -11.68605 -11.56503 -11.45003 -10.86493 -10.55281 -10.33919 -10.09561 -9.94425 -9.48074 -8.99535 -8.50401 -6.00650 0.37088 0.53003 1.36905 1.42497 1.51758 1.58441 1.89614 2.03806 2.28885 2.44162 2.77428 2.91234 3.03007 3.16711 3.28177 3.66320 3.70923 3.89988 4.01317 4.12433 4.15419 4.21553 4.28946 4.35137 4.42479 4.45440 4.46146 4.56129 4.69395 4.71817 4.76286 4.88367 4.90733 4.93808 4.99891 5.16977 5.30244 5.31411 5.39228 5.45102 5.51959 5.55782 5.63965 5.91299 5.91637 5.95222 6.48520 6.50802 7.00953 7.03853 7.42949 7.52480 7.94762 8.66524 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.001847 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.262584 B =15152.229346 C =15540.315246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.328 6.328 3 C 0.118 3.882 4 C -0.221 4.221 5 C -0.087 4.087 6 C -0.161 4.161 7 C -0.079 4.079 8 C -0.100 4.100 9 C -0.076 4.076 10 C -0.108 4.108 11 C -0.162 4.162 12 C 0.100 3.900 13 H 0.107 0.893 14 N -0.698 5.698 15 C 0.709 3.291 16 O -0.632 6.632 17 N -0.722 5.722 18 C 0.142 3.858 19 C 0.435 3.565 20 O -0.623 6.623 21 N -0.559 5.559 22 C -0.337 4.337 23 H 0.087 0.913 24 C -0.012 4.012 25 N -0.916 5.916 26 Si 0.998 3.002 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.410 0.590 43 H 0.410 0.590 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.399 0.601 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.151 26.128 -14.406 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.242 6.242 3 C 0.072 3.928 4 C -0.239 4.239 5 C -0.105 4.105 6 C -0.179 4.179 7 C -0.096 4.096 8 C -0.101 4.101 9 C -0.077 4.077 10 C -0.165 4.165 11 C -0.201 4.201 12 C -0.006 4.006 13 H 0.125 0.875 14 N -0.351 5.351 15 C 0.409 3.591 16 O -0.513 6.513 17 N -0.380 5.380 18 C 0.014 3.986 19 C 0.222 3.778 20 O -0.511 6.511 21 N -0.195 5.195 22 C -0.466 4.466 23 H 0.105 0.895 24 C -0.213 4.213 25 N -0.556 5.556 26 Si 0.821 3.179 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.194 1.194 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.246 0.754 43 H 0.248 0.752 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.233 0.767 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.219 26.042 -14.009 29.596 hybrid contribution -0.412 -1.172 -0.024 1.243 sum -1.631 24.870 -14.033 28.602 Atomic orbital electron populations 1.23226 0.77426 1.04744 1.01990 1.86136 1.22472 1.27138 1.88408 1.19160 0.92183 0.84809 0.96625 1.21487 1.00847 0.92385 1.09207 1.21292 0.95259 0.97357 0.96546 1.21370 0.94006 0.99128 1.03431 1.21130 1.01145 0.90404 0.96956 1.18563 0.89881 0.94319 1.07377 1.20472 0.98070 0.95126 0.94070 1.21232 1.02256 0.98510 0.94470 1.23889 0.91399 1.02763 1.02021 1.21434 1.03851 0.78125 0.97226 0.87544 1.44188 1.71824 1.05708 1.13430 1.15846 0.78165 0.81236 0.83857 1.90871 1.56706 1.69965 1.33763 1.44645 1.72709 1.04134 1.16508 1.20582 1.02469 0.87420 0.88151 1.20381 0.83789 0.88338 0.85334 1.90465 1.54194 1.81234 1.25238 1.41834 1.58277 1.05896 1.13464 1.19743 1.45052 0.81884 0.99899 0.89517 1.26152 0.95723 1.04970 0.94422 1.69685 1.44701 1.37381 1.03844 0.84850 0.78436 0.76205 0.78378 1.19550 1.19675 1.19438 0.91234 0.87833 0.92336 0.84279 0.83594 0.83483 0.83450 0.90615 0.91787 0.92786 0.86521 0.86496 0.75382 0.75206 0.89028 0.89192 0.76703 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -7.49 9.55 -92.40 -0.88 -8.38 16 3 C 0.12 2.48 6.61 22.51 0.15 2.63 16 4 C -0.22 -3.73 9.04 22.37 0.20 -3.53 16 5 C -0.09 -1.19 10.04 22.26 0.22 -0.96 16 6 C -0.16 -2.12 10.04 22.28 0.22 -1.89 16 7 C -0.08 -1.19 9.22 22.25 0.21 -0.99 16 8 C -0.10 -1.96 5.07 -19.77 -0.10 -2.06 16 9 C -0.08 -1.43 1.89 -52.92 -0.10 -1.53 16 10 C -0.11 -1.84 8.38 71.98 0.60 -1.24 16 11 C -0.16 -2.65 9.29 30.59 0.28 -2.36 16 12 C 0.10 2.41 6.11 44.99 0.27 2.68 16 13 H 0.11 3.21 7.40 -2.39 -0.02 3.19 16 14 N -0.70 -18.02 5.35 -457.82 -2.45 -20.47 16 15 C 0.71 24.15 8.57 179.06 1.53 25.68 16 16 O -0.63 -26.05 15.91 -4.01 -0.06 -26.11 16 17 N -0.72 -24.91 5.53 -482.30 -2.67 -27.58 16 18 C 0.14 5.41 6.15 85.63 0.53 5.94 16 19 C 0.43 20.35 7.85 87.66 0.69 21.03 16 20 O -0.62 -32.41 15.24 -3.07 -0.05 -32.46 16 21 N -0.56 -28.39 5.29 -306.98 -1.62 -30.01 16 22 C -0.34 -18.64 9.68 84.04 0.81 -17.82 16 23 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 25 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 26 Si 1.00 41.92 29.55 68.60 2.03 43.95 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 29 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 30 H 0.07 0.82 7.67 -2.38 -0.02 0.81 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 0.84 7.65 -2.39 -0.02 0.83 16 33 H 0.14 1.85 6.30 -2.91 -0.02 1.83 16 34 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.15 1.59 7.02 -2.91 -0.02 1.57 16 37 H 0.07 1.02 7.79 -2.38 -0.02 1.00 16 38 H 0.06 1.05 8.03 -2.39 -0.02 1.03 16 39 H 0.05 1.08 8.08 -2.39 -0.02 1.07 16 40 H 0.12 1.57 8.03 -2.39 -0.02 1.56 16 41 H 0.12 1.58 7.13 -2.39 -0.02 1.57 16 42 H 0.41 8.51 7.85 -92.71 -0.73 7.78 16 43 H 0.41 13.63 7.45 -92.71 -0.69 12.94 16 44 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 45 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 47 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -71.94 398.37 0.57 -71.36 By element: Atomic # 1 Polarization: 52.64 SS G_CDS: -1.11 Total: 51.53 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 7.11 Total: 26.85 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -6.46 Total: -126.75 kcal Atomic # 8 Polarization: -65.95 SS G_CDS: -0.99 Total: -66.94 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -71.94 0.57 -71.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344842522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.005 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds