Wall clock time and date at job start Wed Apr 1 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47188 * 2 1 4 4 C 1.53006 * 109.46988 * 240.00421 * 2 1 3 5 5 O 1.45197 * 109.47420 * 120.00583 * 2 1 3 6 6 C 1.34232 * 117.00024 * 59.99496 * 5 2 1 7 7 O 1.20820 * 120.00104 * 0.02562 * 6 5 2 8 8 C 1.50703 * 119.99765 * 180.02562 * 6 5 2 9 9 C 1.53002 * 110.88834 * 62.42887 * 8 6 5 10 10 C 1.55158 * 111.00067 * 298.54620 * 8 6 5 11 11 C 1.54324 * 102.93809 * 206.38778 * 10 8 6 12 12 N 1.47021 * 107.27575 * 22.19545 * 11 10 8 13 13 S 1.65593 * 125.65107 * 181.02346 * 12 11 10 14 14 O 1.42104 * 104.27905 * 333.95381 * 13 12 11 15 15 O 1.42102 * 104.27718 * 206.09161 * 13 12 11 16 16 C 1.81399 * 104.45079 * 90.02311 * 13 12 11 17 17 C 1.53005 * 109.47445 * 179.97438 * 16 13 12 18 18 C 1.50696 * 109.47353 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99993 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00415 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00139 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47176 * 89.99933 * 22 20 18 24 24 H 1.48504 * 109.47386 * 210.00135 * 22 20 18 25 25 H 1.48504 * 109.46946 * 329.99954 * 22 20 18 26 26 C 1.47424 * 108.69913 * 1.28622 * 12 11 10 27 27 H 1.08997 * 109.46604 * 299.99473 * 1 2 3 28 28 H 1.09002 * 109.47109 * 59.99605 * 1 2 3 29 29 H 1.08998 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47413 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47556 * 300.00667 * 3 2 1 32 32 H 1.09008 * 109.47103 * 60.00331 * 3 2 1 33 33 H 1.09005 * 109.47012 * 300.00139 * 4 2 1 34 34 H 1.09000 * 109.46816 * 59.99395 * 4 2 1 35 35 H 1.08996 * 109.46884 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47040 * 297.57263 * 9 8 6 37 37 H 1.09001 * 109.46639 * 57.57035 * 9 8 6 38 38 H 1.08994 * 109.47129 * 177.57438 * 9 8 6 39 39 H 1.08995 * 110.71895 * 88.03124 * 10 8 6 40 40 H 1.08992 * 110.72609 * 324.74948 * 10 8 6 41 41 H 1.09006 * 109.88334 * 262.77557 * 11 10 8 42 42 H 1.09003 * 110.01135 * 141.68622 * 11 10 8 43 43 H 1.09001 * 109.47190 * 299.99797 * 16 13 12 44 44 H 1.09004 * 109.47089 * 59.99930 * 16 13 12 45 45 H 1.09001 * 109.46962 * 300.00183 * 17 16 13 46 46 H 1.09004 * 109.46832 * 60.00020 * 17 16 13 47 47 H 0.96999 * 120.00929 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.36952 * 94.48130 * 26 12 11 49 49 H 1.09000 * 110.36813 * 216.80758 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2494 5 8 2.0141 -0.6846 1.1854 6 6 1.6534 -1.9685 1.3377 7 8 0.9567 -2.5028 0.5077 8 6 2.1175 -2.7436 2.5439 9 6 1.5736 -2.1240 3.8328 10 6 3.6657 -2.8379 2.5824 11 6 3.9132 -4.1361 3.3792 12 7 2.6944 -4.9518 3.2744 13 16 2.4584 -6.4298 3.9827 14 8 3.7680 -6.9615 4.1290 15 8 1.4975 -7.0670 3.1520 16 6 1.7426 -6.0454 5.6045 17 6 1.4750 -7.3458 6.3652 18 6 0.8810 -7.0264 7.7128 19 1 0.7108 -5.9988 7.9981 20 6 0.5547 -8.0461 8.5815 21 7 0.0358 -7.7675 9.7574 22 14 0.8497 -9.8235 8.0883 23 1 2.2127 -10.2347 8.5104 24 1 -0.1565 -10.6939 8.7482 25 1 0.7272 -9.9551 6.6142 26 6 1.7197 -4.2386 2.4289 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 1.9616 -1.1112 3.9410 37 1 0.4849 -2.0934 3.7899 38 1 1.8869 -2.7260 4.6857 39 1 4.0916 -1.9795 3.1018 40 1 4.0723 -2.9207 1.5745 41 1 4.1108 -3.8977 4.4243 42 1 4.7593 -4.6778 2.9564 43 1 2.4394 -5.4288 6.1723 44 1 0.8058 -5.5047 5.4693 45 1 0.7781 -7.9621 5.7972 46 1 2.4116 -7.8869 6.5004 47 1 -0.1934 -8.4848 10.3687 48 1 1.7961 -4.5754 1.3951 49 1 0.7081 -4.3914 2.8048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416513229.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:49 Heat of formation + Delta-G solvation = -165.047081 kcal Electronic energy + Delta-G solvation = -30016.616337 eV Core-core repulsion = 25877.930684 eV Total energy + Delta-G solvation = -4138.685653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39481 -39.08105 -37.06778 -36.76226 -35.60409 -34.49040 -33.96699 -32.57950 -31.49634 -29.77856 -27.79812 -27.77020 -26.92890 -25.96193 -24.50662 -22.43686 -21.19014 -20.97491 -19.41203 -18.84639 -17.92042 -17.04697 -16.97265 -16.76074 -16.28871 -15.87997 -15.62305 -15.15023 -14.78169 -14.64855 -14.30470 -14.02508 -14.00257 -13.91038 -13.53888 -13.22821 -12.88276 -12.81012 -12.68988 -12.51634 -12.44484 -12.31260 -12.27928 -12.17741 -11.91719 -11.79428 -11.78123 -11.70546 -11.52000 -11.41711 -11.26987 -11.22217 -11.20895 -11.11115 -10.72654 -10.46173 -10.18023 -10.12105 -9.76249 -9.44531 -8.89215 -8.67415 -6.17733 -4.19153 0.55010 1.92451 2.26245 2.90293 3.25988 3.33477 3.37768 3.88007 4.02690 4.14625 4.31371 4.34974 4.35985 4.43706 4.51708 4.52568 4.56970 4.92248 4.97208 5.09278 5.13909 5.15503 5.26731 5.30563 5.31226 5.33445 5.40846 5.45544 5.47185 5.50013 5.53599 5.55779 5.61427 5.63997 5.70250 5.74991 5.87684 5.90340 5.93168 6.00854 6.21314 6.26096 6.31076 6.79605 6.92158 7.53209 7.53580 8.35046 8.83076 9.41900 10.94549 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.002535 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.174620 B =11043.842326 C =11481.085031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.115 3.885 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.345 6.345 6 C 0.483 3.517 7 O -0.497 6.497 8 C -0.071 4.071 9 C -0.138 4.138 10 C -0.111 4.111 11 C 0.121 3.879 12 N -1.017 6.017 13 S 2.602 3.398 14 O -0.959 6.959 15 O -0.958 6.958 16 C -0.582 4.582 17 C -0.007 4.007 18 C -0.519 4.519 19 H 0.078 0.922 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.869 3.131 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 C 0.146 3.854 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.033 0.967 46 H 0.028 0.972 47 H 0.266 0.734 48 H 0.083 0.917 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 19.660 -19.408 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.079 3.921 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.262 6.262 6 C 0.325 3.675 7 O -0.384 6.384 8 C -0.074 4.074 9 C -0.195 4.195 10 C -0.150 4.150 11 C -0.005 4.005 12 N -0.854 5.854 13 S 2.702 3.298 14 O -0.949 6.949 15 O -0.948 6.948 16 C -0.715 4.715 17 C -0.046 4.046 18 C -0.558 4.558 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.695 3.305 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.186 1.186 26 C 0.020 3.980 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.903 18.531 -19.921 27.841 hybrid contribution -0.232 -0.365 0.230 0.490 sum 5.670 18.166 -19.691 27.384 Atomic orbital electron populations 1.22500 0.93924 1.04888 1.02809 1.22212 0.94502 0.92294 0.83044 1.21846 1.02229 0.92552 1.03099 1.22499 1.01694 1.03242 0.96652 1.86552 1.69599 1.25087 1.45001 1.23142 0.77113 0.80580 0.86620 1.90602 1.34892 1.69897 1.42988 1.21773 0.98122 0.94752 0.92712 1.21794 1.01646 1.01531 0.94565 1.22717 0.92027 0.98426 1.01839 1.21692 0.87386 0.90663 1.00740 1.58881 1.23075 1.38725 1.64699 1.05438 0.74890 0.72000 0.77516 1.93547 1.38118 1.75742 1.87515 1.93561 1.63665 1.72051 1.65537 1.30344 1.12450 1.10273 1.18423 1.19418 0.97940 0.89637 0.97654 1.20829 1.42108 0.95587 0.97261 0.90391 1.24982 0.94236 0.99193 0.94689 1.69875 1.42556 1.33054 1.07835 0.86932 0.78760 0.85005 0.79804 1.19655 1.20738 1.18605 1.21828 0.92666 0.87162 0.96357 0.91880 0.91051 0.89699 0.91444 0.90384 0.91395 0.89727 0.91044 0.91968 0.90806 0.91497 0.90055 0.88617 0.90189 0.90837 0.90479 0.85584 0.85595 0.94925 0.95374 0.92362 0.89903 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 8.37 37.16 0.31 -1.14 16 2 C 0.12 0.90 1.13 -90.62 -0.10 0.80 16 3 C -0.14 -0.77 8.85 37.15 0.33 -0.44 16 4 C -0.18 -1.41 8.37 37.16 0.31 -1.10 16 5 O -0.35 -3.19 9.87 -39.26 -0.39 -3.58 16 6 C 0.48 5.03 5.92 36.01 0.21 5.24 16 7 O -0.50 -6.18 11.31 -18.75 -0.21 -6.39 16 8 C -0.07 -0.68 0.89 -153.39 -0.14 -0.82 16 9 C -0.14 -1.17 8.57 37.16 0.32 -0.85 16 10 C -0.11 -0.90 5.89 -24.90 -0.15 -1.05 16 11 C 0.12 1.22 6.56 -3.06 -0.02 1.20 16 12 N -1.02 -13.24 3.61 -111.29 -0.40 -13.64 16 13 S 2.60 44.62 5.65 -107.50 -0.61 44.01 16 14 O -0.96 -18.64 17.60 -57.54 -1.01 -19.65 16 15 O -0.96 -19.16 17.60 -57.54 -1.01 -20.17 16 16 C -0.58 -10.44 6.12 37.16 0.23 -10.21 16 17 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 18 C -0.52 -14.34 9.66 -34.44 -0.33 -14.68 16 19 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 22 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 26 C 0.15 1.75 5.42 -2.41 -0.01 1.74 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.85 5.89 -51.93 -0.31 0.55 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.08 0.83 5.89 -51.93 -0.31 0.53 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 39 H 0.10 0.58 8.04 -51.93 -0.42 0.16 16 40 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.13 2.01 8.14 -51.92 -0.42 1.59 16 44 H 0.13 2.05 8.14 -51.92 -0.42 1.62 16 45 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 46 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.08 1.06 7.53 -51.93 -0.39 0.67 16 49 H 0.09 1.02 8.06 -51.93 -0.42 0.60 16 LS Contribution 401.34 15.07 6.05 6.05 Total: -1.00 -35.02 401.34 -9.25 -44.26 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.51 Total: -1.91 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 0.75 Total: -19.61 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.37 Total: -39.77 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -2.62 Total: -49.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 44.62 SS G_CDS: -0.61 Total: 44.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.02 -9.25 -44.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416513229.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.784 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds