Wall clock time and date at job start Wed Apr 1 2020 05:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47188 * 2 1 4 4 C 1.53006 * 109.46988 * 240.00421 * 2 1 3 5 5 O 1.45197 * 109.47420 * 120.00583 * 2 1 3 6 6 C 1.34232 * 117.00024 * 59.99496 * 5 2 1 7 7 O 1.20820 * 120.00104 * 0.02562 * 6 5 2 8 8 C 1.50703 * 119.99765 * 180.02562 * 6 5 2 9 9 C 1.53002 * 110.88834 * 62.42887 * 8 6 5 10 10 C 1.55158 * 111.00067 * 298.54620 * 8 6 5 11 11 C 1.54324 * 102.93809 * 206.38778 * 10 8 6 12 12 N 1.47021 * 107.27575 * 22.19545 * 11 10 8 13 13 S 1.65593 * 125.65107 * 181.02346 * 12 11 10 14 14 O 1.42104 * 104.27905 * 333.95381 * 13 12 11 15 15 O 1.42102 * 104.27718 * 206.09161 * 13 12 11 16 16 C 1.81399 * 104.45079 * 90.02311 * 13 12 11 17 17 C 1.53005 * 109.47445 * 179.97438 * 16 13 12 18 18 C 1.50696 * 109.47353 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99993 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00415 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00139 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47176 * 89.99933 * 22 20 18 24 24 H 1.48504 * 109.47386 * 210.00135 * 22 20 18 25 25 H 1.48504 * 109.46946 * 329.99954 * 22 20 18 26 26 C 1.47424 * 108.69913 * 1.28622 * 12 11 10 27 27 H 1.08997 * 109.46604 * 299.99473 * 1 2 3 28 28 H 1.09002 * 109.47109 * 59.99605 * 1 2 3 29 29 H 1.08998 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47413 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47556 * 300.00667 * 3 2 1 32 32 H 1.09008 * 109.47103 * 60.00331 * 3 2 1 33 33 H 1.09005 * 109.47012 * 300.00139 * 4 2 1 34 34 H 1.09000 * 109.46816 * 59.99395 * 4 2 1 35 35 H 1.08996 * 109.46884 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47040 * 297.57263 * 9 8 6 37 37 H 1.09001 * 109.46639 * 57.57035 * 9 8 6 38 38 H 1.08994 * 109.47129 * 177.57438 * 9 8 6 39 39 H 1.08995 * 110.71895 * 88.03124 * 10 8 6 40 40 H 1.08992 * 110.72609 * 324.74948 * 10 8 6 41 41 H 1.09006 * 109.88334 * 262.77557 * 11 10 8 42 42 H 1.09003 * 110.01135 * 141.68622 * 11 10 8 43 43 H 1.09001 * 109.47190 * 299.99797 * 16 13 12 44 44 H 1.09004 * 109.47089 * 59.99930 * 16 13 12 45 45 H 1.09001 * 109.46962 * 300.00183 * 17 16 13 46 46 H 1.09004 * 109.46832 * 60.00020 * 17 16 13 47 47 H 0.96999 * 120.00929 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.36952 * 94.48130 * 26 12 11 49 49 H 1.09000 * 110.36813 * 216.80758 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2494 5 8 2.0141 -0.6846 1.1854 6 6 1.6534 -1.9685 1.3377 7 8 0.9567 -2.5028 0.5077 8 6 2.1175 -2.7436 2.5439 9 6 1.5736 -2.1240 3.8328 10 6 3.6657 -2.8379 2.5824 11 6 3.9132 -4.1361 3.3792 12 7 2.6944 -4.9518 3.2744 13 16 2.4584 -6.4298 3.9827 14 8 3.7680 -6.9615 4.1290 15 8 1.4975 -7.0670 3.1520 16 6 1.7426 -6.0454 5.6045 17 6 1.4750 -7.3458 6.3652 18 6 0.8810 -7.0264 7.7128 19 1 0.7108 -5.9988 7.9981 20 6 0.5547 -8.0461 8.5815 21 7 0.0358 -7.7675 9.7574 22 14 0.8497 -9.8235 8.0883 23 1 2.2127 -10.2347 8.5104 24 1 -0.1565 -10.6939 8.7482 25 1 0.7272 -9.9551 6.6142 26 6 1.7197 -4.2386 2.4289 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7208 -1.2496 36 1 1.9616 -1.1112 3.9410 37 1 0.4849 -2.0934 3.7899 38 1 1.8869 -2.7260 4.6857 39 1 4.0916 -1.9795 3.1018 40 1 4.0723 -2.9207 1.5745 41 1 4.1108 -3.8977 4.4243 42 1 4.7593 -4.6778 2.9564 43 1 2.4394 -5.4288 6.1723 44 1 0.8058 -5.5047 5.4693 45 1 0.7781 -7.9621 5.7972 46 1 2.4116 -7.8869 6.5004 47 1 -0.1934 -8.4848 10.3687 48 1 1.7961 -4.5754 1.3951 49 1 0.7081 -4.3914 2.8048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416513229.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:48 Heat of formation + Delta-G solvation = -188.480185 kcal Electronic energy + Delta-G solvation = -30017.632472 eV Core-core repulsion = 25877.930684 eV Total energy + Delta-G solvation = -4139.701788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15843 -39.88380 -38.25183 -37.84867 -37.09258 -35.89923 -35.15268 -33.49242 -33.41660 -30.58384 -28.37501 -28.27696 -27.98350 -27.58716 -25.34300 -23.47235 -22.83196 -21.72121 -20.17445 -20.05331 -19.44312 -18.68017 -17.79715 -17.56716 -17.26636 -17.05547 -16.92345 -16.38913 -16.11521 -15.54364 -15.37941 -15.30156 -14.89156 -14.79609 -14.70786 -14.53176 -14.07523 -13.80915 -13.45641 -13.39370 -13.28971 -13.24220 -13.15485 -13.09348 -13.07928 -12.96670 -12.94392 -12.92020 -12.83824 -12.58692 -12.44644 -12.24046 -12.12365 -11.97210 -11.90148 -11.82541 -11.71054 -11.37744 -11.30770 -10.88123 -10.84066 -9.99285 -8.36238 -6.41668 -0.83483 1.14102 1.31744 1.34112 1.43755 1.44933 1.77998 2.29543 2.76835 2.95909 2.97951 3.11217 3.48415 3.67829 3.74863 3.81496 3.85264 3.88482 3.97914 4.03230 4.16890 4.24367 4.42876 4.56269 4.59006 4.61449 4.65367 4.70390 4.78111 4.80072 4.82913 4.86524 4.90661 4.91880 4.97369 5.01525 5.05366 5.06917 5.14818 5.15437 5.26968 5.29738 5.31602 5.33848 5.47305 5.54083 6.17057 6.64370 6.77436 7.22673 8.79080 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.002535 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.174620 B =11043.842326 C =11481.085031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.106 3.894 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.343 6.343 6 C 0.485 3.515 7 O -0.522 6.522 8 C -0.066 4.066 9 C -0.139 4.139 10 C -0.101 4.101 11 C 0.108 3.892 12 N -1.011 6.011 13 S 2.630 3.370 14 O -0.981 6.981 15 O -0.989 6.989 16 C -0.584 4.584 17 C -0.018 4.018 18 C -0.524 4.524 19 H 0.052 0.948 20 C 0.014 3.986 21 N -0.939 5.939 22 Si 0.922 3.078 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.251 1.251 26 C 0.137 3.863 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.030 0.970 46 H 0.032 0.968 47 H 0.270 0.730 48 H 0.072 0.928 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.335 21.255 -20.579 30.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.070 3.930 3 C -0.192 4.192 4 C -0.239 4.239 5 O -0.260 6.260 6 C 0.328 3.672 7 O -0.411 6.411 8 C -0.069 4.069 9 C -0.196 4.196 10 C -0.140 4.140 11 C -0.016 4.016 12 N -0.850 5.850 13 S 2.729 3.271 14 O -0.971 6.971 15 O -0.980 6.980 16 C -0.716 4.716 17 C -0.057 4.057 18 C -0.563 4.563 19 H 0.071 0.929 20 C -0.184 4.184 21 N -0.579 5.579 22 Si 0.745 3.255 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.175 1.175 26 C 0.012 3.988 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.283 20.134 -21.086 30.051 hybrid contribution -0.672 -0.715 0.532 1.116 sum 6.612 19.419 -20.555 29.040 Atomic orbital electron populations 1.22479 0.94212 1.03474 1.03800 1.22498 0.94468 0.93490 0.82495 1.21861 1.02539 0.90715 1.04130 1.22472 1.01980 1.01932 0.97470 1.86543 1.69379 1.24352 1.45718 1.23252 0.76589 0.80940 0.86383 1.90612 1.36069 1.70498 1.43950 1.21719 0.99300 0.92861 0.93012 1.21839 1.01470 1.02513 0.93752 1.22755 0.90692 0.98292 1.02228 1.22057 0.85959 0.91085 1.02539 1.58454 1.24516 1.38120 1.63890 1.04308 0.73699 0.72396 0.76708 1.93513 1.38919 1.76953 1.87723 1.93518 1.64627 1.73691 1.66136 1.30310 1.14073 1.08079 1.19093 1.19382 0.97636 0.92492 0.96167 1.21148 1.41559 0.94502 0.99124 0.92944 1.25844 0.94252 1.03643 0.94712 1.69997 1.44239 1.34500 1.09125 0.86063 0.79321 0.80003 0.80088 1.18413 1.19994 1.17511 1.21928 0.92435 0.89035 0.95431 0.91622 0.89361 0.92238 0.90946 0.88621 0.91130 0.92264 0.89388 0.91430 0.88948 0.91990 0.89878 0.85687 0.89772 0.88843 0.90384 0.83557 0.84228 0.95218 0.94970 0.92133 0.91012 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 2 C 0.11 1.47 1.13 -10.79 -0.01 1.46 16 3 C -0.14 -1.11 8.85 71.98 0.64 -0.47 16 4 C -0.18 -2.55 8.37 71.98 0.60 -1.95 16 5 O -0.34 -5.71 9.87 -51.43 -0.51 -6.22 16 6 C 0.49 9.60 5.92 71.24 0.42 10.03 16 7 O -0.52 -13.09 11.31 21.98 0.25 -12.84 16 8 C -0.07 -1.16 0.89 -51.46 -0.05 -1.21 16 9 C -0.14 -2.05 8.57 71.98 0.62 -1.43 16 10 C -0.10 -1.35 5.89 31.78 0.19 -1.16 16 11 C 0.11 1.92 6.56 86.73 0.57 2.49 16 12 N -1.01 -24.98 3.61 -506.00 -1.82 -26.80 16 13 S 2.63 87.83 5.65 -56.49 -0.32 87.51 16 14 O -0.98 -37.00 17.60 -127.65 -2.25 -39.25 16 15 O -0.99 -39.37 17.60 -127.65 -2.25 -41.62 16 16 C -0.58 -20.36 6.12 71.98 0.44 -19.92 16 17 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16 18 C -0.52 -29.24 9.66 25.60 0.25 -28.99 16 19 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 20 C 0.01 0.81 5.47 84.65 0.46 1.28 16 21 N -0.94 -57.34 13.96 21.44 0.30 -57.04 16 22 Si 0.92 43.78 27.47 68.60 1.88 45.66 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 26 C 0.14 3.22 5.42 86.93 0.47 3.69 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.20 5.89 -2.39 -0.01 1.18 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.06 1.16 5.89 -2.38 -0.01 1.15 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.21 7.89 -2.39 -0.02 1.19 16 39 H 0.12 0.99 8.04 -2.39 -0.02 0.98 16 40 H 0.08 1.08 8.03 -2.39 -0.02 1.07 16 41 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.15 4.44 8.14 -2.39 -0.02 4.42 16 44 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 45 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 46 H 0.03 1.46 7.57 -2.38 -0.02 1.44 16 47 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 48 H 0.07 1.85 7.53 -2.39 -0.02 1.83 16 49 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 Total: -1.00 -76.40 401.34 1.47 -74.93 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.86 Total: 14.62 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 5.32 Total: -38.95 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.53 Total: -83.84 kcal Atomic # 8 Polarization: -95.17 SS G_CDS: -4.75 Total: -99.92 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Atomic # 16 Polarization: 87.83 SS G_CDS: -0.32 Total: 87.51 kcal Total: -76.40 1.47 -74.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416513229.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.553 kcal (2) G-P(sol) polarization free energy of solvation -76.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds