Wall clock time and date at job start Wed Apr 1 2020 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35739 * 116.99901 * 2 1 4 4 C 1.38929 * 119.59998 * 180.02562 * 3 2 1 5 5 C 1.38289 * 119.18917 * 179.72349 * 4 3 2 6 6 C 1.39449 * 118.42311 * 0.51383 * 5 4 3 7 7 N 1.39905 * 120.43066 * 179.73704 * 6 5 4 8 8 C 1.34780 * 119.99779 * 327.96821 * 7 6 5 9 9 O 1.21376 * 120.00362 * 3.83227 * 8 7 6 10 10 C 1.49339 * 119.99497 * 183.82865 * 8 7 6 11 11 O 1.21366 * 120.00246 * 353.38090 * 10 8 7 12 12 N 1.34777 * 119.99794 * 173.38663 * 10 8 7 13 13 C 1.46920 * 120.62972 * 171.32797 * 12 10 8 14 14 C 1.53195 * 108.89229 * 126.46171 * 13 12 10 15 15 C 1.53038 * 109.31412 * 54.56393 * 14 13 12 16 16 C 1.50701 * 109.46189 * 178.62900 * 15 14 13 17 17 H 1.07996 * 119.99701 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00017 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00324 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47147 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47018 * 120.00058 * 20 18 16 23 23 H 1.48498 * 109.47363 * 240.00015 * 20 18 16 24 24 C 1.53047 * 109.53624 * 298.63520 * 15 14 13 25 25 C 1.46959 * 120.65285 * 351.14224 * 12 10 8 26 26 C 1.38732 * 119.13325 * 359.46177 * 6 5 4 27 27 C 1.50702 * 119.63037 * 180.27508 * 26 6 5 28 28 N 1.31924 * 120.73144 * 0.29818 * 26 6 5 29 29 H 1.09007 * 109.46817 * 60.00138 * 1 2 3 30 30 H 1.09000 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47137 * 300.00463 * 1 2 3 32 32 H 1.08004 * 120.40600 * 359.96753 * 4 3 2 33 33 H 1.08001 * 120.79068 * 180.26680 * 5 4 3 34 34 H 0.96999 * 119.99879 * 147.96922 * 7 6 5 35 35 H 1.09004 * 109.58817 * 6.60340 * 13 12 10 36 36 H 1.09001 * 109.58943 * 246.31512 * 13 12 10 37 37 H 1.08996 * 109.49877 * 174.51519 * 14 13 12 38 38 H 1.08995 * 109.49518 * 294.57905 * 14 13 12 39 39 H 1.08996 * 109.46117 * 58.65200 * 15 14 13 40 40 H 0.96996 * 120.00068 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.49637 * 181.31195 * 24 15 14 42 42 H 1.08996 * 109.49588 * 301.41270 * 24 15 14 43 43 H 1.09010 * 109.46413 * 113.75246 * 25 12 10 44 44 H 1.09003 * 109.71100 * 353.47279 * 25 12 10 45 45 H 1.09004 * 109.46645 * 90.00262 * 27 26 6 46 46 H 1.08997 * 109.46790 * 209.99899 * 27 26 6 47 47 H 1.08993 * 109.47124 * 330.00603 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4331 1.2725 -0.0005 5 6 4.0520 2.5091 -0.0064 6 6 3.2525 3.6516 -0.0005 7 7 3.8345 4.9238 -0.0005 8 6 5.0174 5.1237 0.6138 9 8 5.6113 4.1869 1.1066 10 6 5.5973 6.4979 0.6879 11 8 5.0667 7.4135 0.0937 12 7 6.7101 6.7214 1.4147 13 6 7.4003 8.0167 1.3479 14 6 7.5659 8.5643 2.7690 15 6 8.2733 7.5194 3.6349 16 6 8.4682 8.0678 5.0249 17 1 8.1218 9.0617 5.2667 18 6 9.0876 7.3002 5.9883 19 7 9.5089 6.0896 5.6940 20 14 9.3298 7.9803 7.7112 21 1 8.7719 9.3546 7.7838 22 1 8.6297 7.1100 8.6898 23 1 10.7798 8.0167 8.0297 24 6 7.4217 6.2496 3.7028 25 6 7.2544 5.6757 2.2923 26 6 1.8724 3.5101 -0.0005 27 6 0.9976 4.7373 -0.0005 28 7 1.3174 2.3133 0.0000 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0214 0.3668 -0.0004 33 1 5.1291 2.5883 -0.0112 34 1 3.3866 5.6620 -0.4426 35 1 6.8105 8.7147 0.7537 36 1 8.3809 7.8851 0.8904 37 1 8.1618 9.4765 2.7402 38 1 6.5852 8.7836 3.1909 39 1 9.2437 7.2828 3.1985 40 1 9.9444 5.5495 6.3719 41 1 7.9149 5.5143 4.3385 42 1 6.4423 6.4901 4.1162 43 1 8.2232 5.3508 1.9126 44 1 6.5703 4.8276 2.3216 45 1 0.7867 5.0330 -1.0282 46 1 0.0620 4.5164 0.5134 47 1 1.5114 5.5497 0.5132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543827779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:14 Heat of formation + Delta-G solvation = -51.933705 kcal Electronic energy + Delta-G solvation = -30547.940480 eV Core-core repulsion = 26311.008591 eV Total energy + Delta-G solvation = -4236.931889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52236 -40.52882 -39.00989 -37.99617 -37.10949 -35.23058 -33.52540 -33.30822 -31.29934 -30.82532 -30.13459 -28.59340 -27.18140 -26.45506 -24.84910 -23.38665 -22.70662 -22.40554 -21.86297 -20.39341 -19.24464 -18.40827 -17.96126 -17.38761 -16.79712 -16.62951 -16.28413 -16.09936 -15.93332 -15.17158 -14.74449 -14.58680 -14.52458 -14.28468 -14.00977 -13.92076 -13.57073 -13.12939 -12.94436 -12.86846 -12.76789 -12.74373 -12.61433 -12.39990 -12.08386 -11.81052 -11.60933 -11.44118 -11.05516 -10.96611 -10.75256 -10.60977 -10.41547 -10.15660 -10.05390 -9.82754 -9.71620 -9.27435 -9.22687 -8.71099 -8.40906 -8.19646 -8.13185 -6.04105 -4.10610 0.70280 0.97145 1.52908 2.25368 2.86549 3.17694 3.26557 3.35217 3.38690 3.48215 3.56558 3.87804 4.30922 4.39812 4.41607 4.72557 4.86952 5.00933 5.04356 5.15459 5.25476 5.25853 5.27900 5.33152 5.47917 5.54944 5.69131 5.75790 5.77883 5.82156 5.93207 6.01395 6.16336 6.26070 6.36800 6.52216 6.58926 6.69551 6.83462 6.95748 6.98348 7.08962 7.22018 7.55184 7.59078 7.63125 7.72019 7.89506 7.99861 8.10225 8.38048 8.92926 9.54698 11.01421 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.002408 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.422186 B =11626.316400 C =12607.074859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.308 3.692 4 C -0.174 4.174 5 C -0.041 4.041 6 C 0.059 3.941 7 N -0.638 5.638 8 C 0.510 3.490 9 O -0.487 6.487 10 C 0.503 3.497 11 O -0.540 6.540 12 N -0.558 5.558 13 C 0.107 3.893 14 C -0.123 4.123 15 C 0.046 3.954 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.123 4.123 25 C 0.066 3.934 26 C 0.149 3.851 27 C -0.110 4.110 28 N -0.523 5.523 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.147 0.853 33 H 0.163 0.837 34 H 0.423 0.577 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.107 0.893 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.327 -8.108 -14.319 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.215 6.215 3 C 0.129 3.871 4 C -0.195 4.195 5 C -0.068 4.068 6 C -0.038 4.038 7 N -0.286 5.286 8 C 0.294 3.706 9 O -0.361 6.361 10 C 0.285 3.715 11 O -0.420 6.420 12 N -0.289 5.289 13 C -0.014 4.014 14 C -0.161 4.161 15 C 0.027 3.973 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.162 4.162 25 C -0.054 4.054 26 C 0.010 3.990 27 C -0.167 4.167 28 N -0.247 5.247 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.262 0.738 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.137 0.863 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.819 -8.738 -14.152 22.953 hybrid contribution 0.679 0.743 0.911 1.357 sum -15.140 -7.995 -13.241 21.644 Atomic orbital electron populations 1.22845 0.77338 1.02863 1.02427 1.86257 1.22819 1.24343 1.88054 1.19790 0.89407 0.84432 0.93480 1.21011 0.91690 0.99319 1.07489 1.21693 1.02019 0.89575 0.93469 1.18363 0.92372 0.85527 1.07508 1.43069 1.21520 1.10119 1.53882 1.20646 0.81255 0.90663 0.78051 1.90558 1.58569 1.43711 1.43270 1.19575 0.82393 0.87790 0.81784 1.90721 1.60205 1.44010 1.47030 1.48234 1.24134 1.16394 1.40162 1.21924 0.96201 0.83423 0.99891 1.22014 1.01144 1.00031 0.92880 1.18688 0.93874 0.90483 0.94252 1.21216 1.37683 1.00872 0.95297 0.92634 1.24967 0.95386 0.94933 0.98725 1.69845 1.39996 1.09142 1.33904 0.86564 0.77790 0.79130 0.84678 1.19848 1.21057 1.21035 1.22040 0.99681 1.01816 0.92643 1.23104 1.00344 0.90498 0.91487 1.20684 0.89730 0.92624 0.95938 1.20766 0.99617 0.92803 1.03509 1.67085 1.40086 0.97794 1.19717 0.92367 0.88706 0.92308 0.83539 0.81968 0.73811 0.89973 0.91303 0.91754 0.92774 0.95358 0.92976 0.87513 0.94463 0.91740 0.86267 0.89834 0.89743 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.31 10.48 -18.93 -0.20 -3.51 16 3 C 0.31 3.62 7.49 -17.13 -0.13 3.49 16 4 C -0.17 -1.93 10.03 -39.31 -0.39 -2.33 16 5 C -0.04 -0.48 8.82 -39.11 -0.34 -0.83 16 6 C 0.06 0.69 6.34 -83.54 -0.53 0.16 16 7 N -0.64 -7.41 4.81 -10.18 -0.05 -7.46 16 8 C 0.51 7.37 7.60 -11.64 -0.09 7.29 16 9 O -0.49 -7.71 10.50 5.47 0.06 -7.65 16 10 C 0.50 8.21 7.73 -11.64 -0.09 8.12 16 11 O -0.54 -9.22 15.92 5.48 0.09 -9.13 16 12 N -0.56 -9.82 2.98 -173.29 -0.52 -10.33 16 13 C 0.11 1.84 6.44 -3.71 -0.02 1.82 16 14 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 15 C 0.05 1.07 2.06 -91.73 -0.19 0.88 16 16 C -0.51 -13.56 8.56 -34.44 -0.29 -13.86 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.53 11.30 55.43 0.63 -23.90 16 20 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.12 -2.77 5.15 -26.61 -0.14 -2.91 16 25 C 0.07 1.24 5.97 -3.69 -0.02 1.22 16 26 C 0.15 1.63 6.80 -82.37 -0.56 1.07 16 27 C -0.11 -0.86 9.63 36.01 0.35 -0.52 16 28 N -0.52 -6.09 9.11 -9.38 -0.09 -6.18 16 29 H 0.06 0.43 8.10 -51.92 -0.42 0.01 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.16 1.98 6.12 -52.49 -0.32 1.66 16 34 H 0.42 4.14 7.19 -40.82 -0.29 3.84 16 35 H 0.08 1.34 7.01 -51.93 -0.36 0.97 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.11 2.70 6.03 -51.93 -0.31 2.38 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 44 H 0.12 2.20 4.34 -54.69 -0.24 1.97 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.60 7.10 -51.93 -0.37 0.23 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -29.94 380.95 -7.51 -37.45 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.51 Total: 5.19 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.64 Total: 3.95 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.02 Total: -47.88 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.94 -7.51 -37.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543827779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.484 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds