Wall clock time and date at job start Wed Apr 1 2020 04:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35739 * 116.99901 * 2 1 4 4 C 1.38929 * 119.59998 * 180.02562 * 3 2 1 5 5 C 1.38289 * 119.18917 * 179.72349 * 4 3 2 6 6 C 1.39449 * 118.42311 * 0.51383 * 5 4 3 7 7 N 1.39905 * 120.43066 * 179.73704 * 6 5 4 8 8 C 1.34780 * 119.99779 * 327.96821 * 7 6 5 9 9 O 1.21376 * 120.00362 * 3.83227 * 8 7 6 10 10 C 1.49339 * 119.99497 * 183.82865 * 8 7 6 11 11 O 1.21366 * 120.00246 * 353.38090 * 10 8 7 12 12 N 1.34777 * 119.99794 * 173.38663 * 10 8 7 13 13 C 1.46920 * 120.62972 * 171.32797 * 12 10 8 14 14 C 1.53195 * 108.89229 * 126.46171 * 13 12 10 15 15 C 1.53038 * 109.31412 * 54.56393 * 14 13 12 16 16 C 1.50701 * 109.46189 * 178.62900 * 15 14 13 17 17 H 1.07996 * 119.99701 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00017 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00324 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47147 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47018 * 120.00058 * 20 18 16 23 23 H 1.48498 * 109.47363 * 240.00015 * 20 18 16 24 24 C 1.53047 * 109.53624 * 298.63520 * 15 14 13 25 25 C 1.46959 * 120.65285 * 351.14224 * 12 10 8 26 26 C 1.38732 * 119.13325 * 359.46177 * 6 5 4 27 27 C 1.50702 * 119.63037 * 180.27508 * 26 6 5 28 28 N 1.31924 * 120.73144 * 0.29818 * 26 6 5 29 29 H 1.09007 * 109.46817 * 60.00138 * 1 2 3 30 30 H 1.09000 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47137 * 300.00463 * 1 2 3 32 32 H 1.08004 * 120.40600 * 359.96753 * 4 3 2 33 33 H 1.08001 * 120.79068 * 180.26680 * 5 4 3 34 34 H 0.96999 * 119.99879 * 147.96922 * 7 6 5 35 35 H 1.09004 * 109.58817 * 6.60340 * 13 12 10 36 36 H 1.09001 * 109.58943 * 246.31512 * 13 12 10 37 37 H 1.08996 * 109.49877 * 174.51519 * 14 13 12 38 38 H 1.08995 * 109.49518 * 294.57905 * 14 13 12 39 39 H 1.08996 * 109.46117 * 58.65200 * 15 14 13 40 40 H 0.96996 * 120.00068 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.49637 * 181.31195 * 24 15 14 42 42 H 1.08996 * 109.49588 * 301.41270 * 24 15 14 43 43 H 1.09010 * 109.46413 * 113.75246 * 25 12 10 44 44 H 1.09003 * 109.71100 * 353.47279 * 25 12 10 45 45 H 1.09004 * 109.46645 * 90.00262 * 27 26 6 46 46 H 1.08997 * 109.46790 * 209.99899 * 27 26 6 47 47 H 1.08993 * 109.47124 * 330.00603 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4331 1.2725 -0.0005 5 6 4.0520 2.5091 -0.0064 6 6 3.2525 3.6516 -0.0005 7 7 3.8345 4.9238 -0.0005 8 6 5.0174 5.1237 0.6138 9 8 5.6113 4.1869 1.1066 10 6 5.5973 6.4979 0.6879 11 8 5.0667 7.4135 0.0937 12 7 6.7101 6.7214 1.4147 13 6 7.4003 8.0167 1.3479 14 6 7.5659 8.5643 2.7690 15 6 8.2733 7.5194 3.6349 16 6 8.4682 8.0678 5.0249 17 1 8.1218 9.0617 5.2667 18 6 9.0876 7.3002 5.9883 19 7 9.5089 6.0896 5.6940 20 14 9.3298 7.9803 7.7112 21 1 8.7719 9.3546 7.7838 22 1 8.6297 7.1100 8.6898 23 1 10.7798 8.0167 8.0297 24 6 7.4217 6.2496 3.7028 25 6 7.2544 5.6757 2.2923 26 6 1.8724 3.5101 -0.0005 27 6 0.9976 4.7373 -0.0005 28 7 1.3174 2.3133 0.0000 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 4.0214 0.3668 -0.0004 33 1 5.1291 2.5883 -0.0112 34 1 3.3866 5.6620 -0.4426 35 1 6.8105 8.7147 0.7537 36 1 8.3809 7.8851 0.8904 37 1 8.1618 9.4765 2.7402 38 1 6.5852 8.7836 3.1909 39 1 9.2437 7.2828 3.1985 40 1 9.9444 5.5495 6.3719 41 1 7.9149 5.5143 4.3385 42 1 6.4423 6.4901 4.1162 43 1 8.2232 5.3508 1.9126 44 1 6.5703 4.8276 2.3216 45 1 0.7867 5.0330 -1.0282 46 1 0.0620 4.5164 0.5134 47 1 1.5114 5.5497 0.5132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543827779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:13 Heat of formation + Delta-G solvation = -71.743187 kcal Electronic energy + Delta-G solvation = -30548.799484 eV Core-core repulsion = 26311.008591 eV Total energy + Delta-G solvation = -4237.790893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56512 -41.58760 -40.16524 -38.94220 -38.61355 -36.32503 -35.25030 -34.13898 -33.05051 -31.79924 -31.67106 -29.31099 -28.50030 -27.62617 -26.18077 -24.59073 -24.18385 -23.55333 -23.04138 -21.67668 -20.69559 -19.36865 -19.08137 -18.49989 -18.40152 -17.72660 -17.62823 -17.22966 -17.00366 -16.54922 -16.34887 -15.65032 -15.55643 -15.28783 -15.03831 -14.98129 -14.84847 -14.67505 -14.43268 -14.38948 -13.94944 -13.65306 -13.43353 -13.38111 -13.23556 -13.18283 -12.84937 -12.70430 -12.51568 -12.46877 -12.32874 -12.15664 -11.96200 -11.61216 -11.49628 -11.11517 -11.01191 -10.86743 -10.69806 -10.44624 -10.08079 -9.71801 -9.05069 -8.07932 -6.21333 -0.26427 0.08377 0.40816 1.10238 1.39795 1.42998 1.52884 1.95772 2.09386 2.34883 2.43720 2.61246 3.06485 3.13090 3.18935 3.59508 3.87162 3.98163 4.12271 4.27871 4.30114 4.40486 4.45115 4.45762 4.49152 4.53895 4.56578 4.63722 4.70463 4.75134 4.79008 4.81504 4.92345 4.95699 5.10092 5.14203 5.18460 5.19890 5.37689 5.41275 5.47932 5.63270 5.82778 5.97731 6.10382 6.17137 6.21672 6.38397 6.53457 6.70140 6.77719 6.89516 7.46663 8.95752 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.002408 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.422186 B =11626.316400 C =12607.074859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.300 3.700 4 C -0.180 4.180 5 C -0.047 4.047 6 C 0.042 3.958 7 N -0.618 5.618 8 C 0.513 3.487 9 O -0.504 6.504 10 C 0.508 3.492 11 O -0.543 6.543 12 N -0.567 5.567 13 C 0.112 3.888 14 C -0.114 4.114 15 C 0.042 3.958 16 C -0.532 4.532 17 H 0.051 0.949 18 C 0.014 3.986 19 N -0.913 5.913 20 Si 0.949 3.051 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.281 1.281 24 C -0.114 4.114 25 C 0.083 3.917 26 C 0.152 3.848 27 C -0.109 4.109 28 N -0.531 5.531 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.055 0.945 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.433 0.567 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.005 0.995 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.128 0.872 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.842 -7.928 -15.218 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.224 6.224 3 C 0.121 3.879 4 C -0.201 4.201 5 C -0.074 4.074 6 C -0.054 4.054 7 N -0.266 5.266 8 C 0.296 3.704 9 O -0.380 6.380 10 C 0.290 3.710 11 O -0.422 6.422 12 N -0.299 5.299 13 C -0.009 4.009 14 C -0.152 4.152 15 C 0.024 3.976 16 C -0.570 4.570 17 H 0.069 0.931 18 C -0.185 4.185 19 N -0.553 5.553 20 Si 0.775 3.225 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.207 1.207 24 C -0.153 4.153 25 C -0.038 4.038 26 C 0.013 3.987 27 C -0.166 4.166 28 N -0.255 5.255 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.074 0.926 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.274 0.726 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.023 0.977 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.145 0.855 45 H 0.123 0.877 46 H 0.108 0.892 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.377 -8.549 -15.082 24.546 hybrid contribution 1.050 0.646 1.149 1.685 sum -16.327 -7.903 -13.933 22.872 Atomic orbital electron populations 1.23074 0.75757 1.04698 1.02325 1.86251 1.24438 1.23927 1.87803 1.20027 0.89810 0.84871 0.93164 1.21175 0.91851 0.99680 1.07364 1.21725 1.01894 0.90131 0.93625 1.18454 0.92861 0.85213 1.08861 1.42858 1.20393 1.10609 1.52767 1.20271 0.82014 0.89557 0.78509 1.90543 1.59279 1.43716 1.44464 1.19798 0.81644 0.88525 0.81028 1.90717 1.60044 1.44510 1.46956 1.48180 1.24839 1.16187 1.40659 1.21881 0.97286 0.83545 0.98179 1.21855 1.00159 0.99296 0.93861 1.18660 0.93381 0.91983 0.93624 1.21585 1.37639 1.00799 0.96958 0.93107 1.25678 0.95363 0.95259 1.02151 1.69971 1.40485 1.09994 1.34857 0.85641 0.77688 0.78584 0.80539 1.19369 1.20903 1.20664 1.21808 0.98200 1.00718 0.94571 1.22813 1.00735 0.90731 0.89478 1.21126 0.89760 0.93365 0.94478 1.20874 0.99246 0.91455 1.05010 1.67170 1.40172 0.98007 1.20169 0.92163 0.85997 0.92646 0.82071 0.82533 0.72615 0.88438 0.90056 0.90924 0.93598 0.97707 0.93015 0.90529 0.95685 0.91842 0.85505 0.87697 0.89222 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 113.37 1.18 1.67 16 2 O -0.32 -6.43 10.48 -90.63 -0.95 -7.38 16 3 C 0.30 6.74 7.49 84.80 0.63 7.37 16 4 C -0.18 -3.85 10.03 22.45 0.23 -3.63 16 5 C -0.05 -1.08 8.82 22.57 0.20 -0.88 16 6 C 0.04 0.94 6.34 38.26 0.24 1.18 16 7 N -0.62 -13.37 4.81 -304.46 -1.46 -14.83 16 8 C 0.51 14.21 7.60 87.23 0.66 14.87 16 9 O -0.50 -15.64 10.50 -3.33 -0.03 -15.67 16 10 C 0.51 15.79 7.73 87.23 0.67 16.46 16 11 O -0.54 -17.34 15.92 -3.30 -0.05 -17.39 16 12 N -0.57 -19.39 2.98 -820.51 -2.45 -21.83 16 13 C 0.11 3.71 6.44 86.36 0.56 4.26 16 14 C -0.11 -4.44 5.30 30.67 0.16 -4.27 16 15 C 0.04 2.01 2.06 -11.51 -0.02 1.99 16 16 C -0.53 -28.56 8.56 25.60 0.22 -28.34 16 17 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 18 C 0.01 0.77 5.30 84.65 0.45 1.22 16 19 N -0.91 -51.40 11.30 21.44 0.24 -51.16 16 20 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 C -0.11 -5.26 5.15 30.67 0.16 -5.10 16 25 C 0.08 3.14 5.97 86.36 0.52 3.66 16 26 C 0.15 3.06 6.80 42.66 0.29 3.35 16 27 C -0.11 -1.46 9.63 71.24 0.69 -0.77 16 28 N -0.53 -11.62 9.11 -296.44 -2.70 -14.33 16 29 H 0.06 0.80 8.10 -2.38 -0.02 0.78 16 30 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.79 8.10 -2.39 -0.02 0.78 16 32 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.16 3.78 6.12 -2.91 -0.02 3.76 16 34 H 0.43 7.52 7.19 -92.71 -0.67 6.85 16 35 H 0.10 2.95 7.01 -2.38 -0.02 2.94 16 36 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.08 4.01 6.03 -2.39 -0.01 3.99 16 42 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 44 H 0.13 4.68 4.34 -46.19 -0.20 4.48 16 45 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 1.06 7.10 -2.39 -0.02 1.04 16 Total: -1.00 -63.99 380.95 1.61 -62.39 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.16 Total: 22.03 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.83 Total: 13.04 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -6.37 Total: -102.15 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -1.04 Total: -40.44 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -63.99 1.61 -62.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543827779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.356 kcal (2) G-P(sol) polarization free energy of solvation -63.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds