Wall clock time and date at job start Wed Apr 1 2020 05:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35729 * 116.99815 * 2 1 4 4 N 1.32154 * 119.73002 * 0.23176 * 3 2 1 5 5 C 1.31998 * 121.72182 * 180.26278 * 4 3 2 6 6 C 1.38103 * 120.98968 * 359.76969 * 5 4 3 7 7 C 1.50700 * 120.32042 * 179.97438 * 6 5 4 8 8 C 1.38700 * 119.35591 * 359.97369 * 6 5 4 9 9 C 1.39042 * 118.41991 * 0.02562 * 8 6 5 10 10 N 1.39878 * 120.51303 * 179.97438 * 9 8 6 11 11 C 1.34780 * 120.00237 * 34.65943 * 10 9 8 12 12 O 1.21397 * 119.99490 * 355.58418 * 11 10 9 13 13 C 1.49335 * 120.00228 * 175.57557 * 11 10 9 14 14 O 1.21362 * 119.99642 * 6.26350 * 13 11 10 15 15 N 1.34778 * 119.99822 * 186.26513 * 13 11 10 16 16 C 1.46930 * 120.63139 * 355.18964 * 15 13 11 17 17 C 1.53200 * 108.77159 * 126.37137 * 16 15 13 18 18 C 1.53037 * 109.31136 * 54.63314 * 17 16 15 19 19 C 1.53036 * 109.54319 * 298.63337 * 18 17 16 20 20 H 1.08993 * 109.49669 * 301.38541 * 19 18 17 21 21 C 1.50697 * 109.49871 * 181.31707 * 19 18 17 22 22 H 1.07992 * 120.00327 * 0.02562 * 21 19 18 23 23 C 1.37881 * 119.99833 * 180.02562 * 21 19 18 24 24 N 1.31514 * 119.99916 * 180.02562 * 23 21 19 25 25 Si 1.86798 * 119.99989 * 359.97438 * 23 21 19 26 26 H 1.48497 * 109.47098 * 90.00744 * 25 23 21 27 27 H 1.48505 * 109.47258 * 210.00144 * 25 23 21 28 28 H 1.48494 * 109.47210 * 330.00323 * 25 23 21 29 29 C 1.46923 * 120.62906 * 174.91393 * 15 13 11 30 30 H 1.09003 * 109.46683 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47548 * 299.99284 * 1 2 3 32 32 H 1.08998 * 109.47196 * 60.00077 * 1 2 3 33 33 H 1.07999 * 119.50293 * 179.74426 * 5 4 3 34 34 H 1.08992 * 109.47170 * 269.97645 * 7 6 5 35 35 H 1.08993 * 109.47056 * 29.97891 * 7 6 5 36 36 H 1.08998 * 109.46828 * 149.97304 * 7 6 5 37 37 H 1.07998 * 120.78999 * 179.97438 * 8 6 5 38 38 H 0.97003 * 120.00414 * 214.94044 * 10 9 8 39 39 H 1.08995 * 109.58787 * 246.15436 * 16 15 13 40 40 H 1.08997 * 109.58767 * 6.44692 * 16 15 13 41 41 H 1.09001 * 109.48924 * 174.58915 * 17 16 15 42 42 H 1.08993 * 109.49478 * 294.68397 * 17 16 15 43 43 H 1.09003 * 109.46053 * 58.65841 * 18 17 16 44 44 H 1.08998 * 109.46077 * 178.62220 * 18 17 16 45 45 H 0.97002 * 120.00214 * 179.97438 * 24 23 21 46 46 H 1.09006 * 109.58458 * 353.41878 * 29 15 13 47 47 H 1.09006 * 109.58778 * 113.83827 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 7 1.3201 2.3143 0.0046 5 6 1.8781 3.5105 -0.0003 6 6 3.2516 3.6545 -0.0059 7 6 3.8726 5.0276 -0.0121 8 6 4.0538 2.5231 -0.0057 9 6 3.4391 1.2759 -0.0004 10 7 4.2060 0.1061 -0.0005 11 6 5.3809 0.0704 0.6589 12 8 5.8122 1.0757 1.1853 13 6 6.1520 -1.2057 0.7422 14 8 5.7803 -2.1808 0.1226 15 7 7.2607 -1.2746 1.5055 16 6 7.7825 -0.0766 2.1774 17 6 7.9406 -0.3786 3.6710 18 6 8.8094 -1.6262 3.8459 19 6 8.1261 -2.8233 3.1809 20 1 7.1436 -2.9756 3.6275 21 6 8.9668 -4.0577 3.3816 22 1 9.8955 -3.9955 3.9291 23 6 8.5501 -5.2668 2.8662 24 7 9.2835 -6.3443 3.0418 25 14 6.9433 -5.3747 1.9198 26 1 7.2009 -5.1312 0.4777 27 1 6.3548 -6.7268 2.0959 28 1 5.9968 -4.3522 2.4332 29 6 7.9669 -2.5502 1.6863 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.2510 4.3899 -0.0005 34 1 4.0188 5.3555 -1.0412 35 1 3.2132 5.7269 0.5019 36 1 4.8349 4.9934 0.4987 37 1 5.1304 2.6087 -0.0104 38 1 3.8942 -0.6782 -0.4786 39 1 8.7514 0.1873 1.7535 40 1 7.0864 0.7510 2.0415 41 1 8.4166 0.4685 4.1649 42 1 6.9596 -0.5536 4.1126 43 1 9.7818 -1.4595 3.3824 44 1 8.9438 -1.8292 4.9084 45 1 8.9902 -7.1950 2.6795 46 1 7.3913 -3.3547 1.2285 47 1 8.9512 -2.4921 1.2214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595083197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:27 Heat of formation + Delta-G solvation = -66.982305 kcal Electronic energy + Delta-G solvation = -31195.119491 eV Core-core repulsion = 26957.535046 eV Total energy + Delta-G solvation = -4237.584445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.65605 -41.65084 -40.09780 -39.04275 -38.79726 -36.69996 -35.22356 -34.16445 -33.68156 -32.31113 -31.67462 -28.90383 -27.90841 -27.22641 -27.00804 -25.49984 -24.00059 -23.64048 -22.72023 -21.75298 -20.74994 -19.55626 -19.25218 -18.89151 -18.52395 -18.05970 -17.67324 -17.32670 -16.99037 -16.46100 -16.33436 -15.86797 -15.66976 -15.58843 -15.19245 -15.17429 -14.96352 -14.86959 -14.64014 -14.35108 -14.15189 -13.77719 -13.62048 -13.58696 -13.29304 -13.06666 -12.89294 -12.75471 -12.55109 -12.36643 -12.20675 -12.13819 -12.05978 -11.80988 -11.64245 -11.38081 -11.10887 -10.91837 -10.83283 -10.38504 -10.04724 -9.80705 -9.11563 -8.40618 -6.43416 -0.33466 0.13926 0.32364 0.98276 1.22226 1.28866 1.36604 1.88113 1.97486 2.18255 2.25548 2.62844 2.94511 2.98587 3.32709 3.68829 3.85393 3.95285 4.00184 4.10977 4.14096 4.17505 4.36813 4.38979 4.40709 4.45206 4.53650 4.59779 4.66868 4.71766 4.72770 4.87810 4.90622 4.92437 5.03103 5.11779 5.17996 5.22449 5.26683 5.37151 5.47086 5.52180 5.55755 5.61327 5.71298 6.10534 6.14419 6.22766 6.46319 6.64019 6.68084 6.71533 7.22030 8.75384 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003102 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.227561 B = 9023.581096 C =10378.343584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.326 6.326 3 C 0.287 3.713 4 N -0.528 5.528 5 C 0.126 3.874 6 C -0.149 4.149 7 C -0.102 4.102 8 C -0.053 4.053 9 C 0.056 3.944 10 N -0.622 5.622 11 C 0.528 3.472 12 O -0.491 6.491 13 C 0.493 3.507 14 O -0.558 6.558 15 N -0.569 5.569 16 C 0.044 3.956 17 C -0.124 4.124 18 C -0.100 4.100 19 C 0.005 3.995 20 H 0.015 0.985 21 C -0.512 4.512 22 H 0.052 0.948 23 C 0.028 3.972 24 N -0.936 5.936 25 Si 0.933 3.067 26 H -0.273 1.273 27 H -0.291 1.291 28 H -0.267 1.267 29 C 0.104 3.896 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.197 0.803 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.158 0.842 38 H 0.428 0.572 39 H 0.082 0.918 40 H 0.165 0.835 41 H 0.105 0.895 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.268 0.732 46 H 0.055 0.945 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.147 26.136 -7.829 31.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.233 6.233 3 C 0.106 3.894 4 N -0.251 5.251 5 C -0.030 4.030 6 C -0.152 4.152 7 C -0.159 4.159 8 C -0.080 4.080 9 C -0.040 4.040 10 N -0.268 5.268 11 C 0.311 3.689 12 O -0.368 6.368 13 C 0.275 3.725 14 O -0.438 6.438 15 N -0.300 5.300 16 C -0.075 4.075 17 C -0.162 4.162 18 C -0.137 4.137 19 C -0.015 4.015 20 H 0.033 0.967 21 C -0.550 4.550 22 H 0.070 0.930 23 C -0.171 4.171 24 N -0.576 5.576 25 Si 0.762 3.238 26 H -0.200 1.200 27 H -0.218 1.218 28 H -0.192 1.192 29 C -0.017 4.017 30 H 0.134 0.866 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.214 0.786 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.175 0.825 38 H 0.267 0.733 39 H 0.101 0.899 40 H 0.180 0.820 41 H 0.123 0.877 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.798 25.733 -7.781 31.700 hybrid contribution 0.125 -1.663 -0.589 1.768 sum -16.674 24.070 -8.370 30.454 Atomic orbital electron populations 1.23065 0.75288 1.04531 1.02641 1.86218 1.24875 1.24279 1.87955 1.19739 0.87579 0.86091 0.95977 1.67437 1.39730 0.98824 1.19081 1.22981 0.92962 0.93827 0.93213 1.21056 0.94245 0.97395 1.02456 1.20734 1.01364 0.90110 1.03734 1.21703 1.02215 0.89149 0.94896 1.17897 0.87655 0.87566 1.10920 1.42855 1.19095 1.15182 1.49683 1.19961 0.81940 0.88544 0.78460 1.90238 1.66390 1.35190 1.44940 1.20146 0.82350 0.88590 0.81389 1.90753 1.69011 1.38474 1.45565 1.48402 1.24345 1.12102 1.45147 1.23585 1.03537 0.87959 0.92401 1.21906 1.00034 0.98524 0.95760 1.21420 0.98599 0.93484 1.00217 1.19347 0.96215 0.95032 0.90900 0.96679 1.21257 1.07494 0.91926 1.34367 0.92981 1.25652 0.99046 0.95713 0.96648 1.69982 1.39829 1.00421 1.47318 0.86124 0.81579 0.76521 0.79623 1.19973 1.21796 1.19237 1.22314 0.95887 0.83588 0.99919 0.86646 0.92216 0.91673 0.78607 0.89624 0.89075 0.91049 0.82469 0.73254 0.89940 0.81954 0.87707 0.92913 0.91991 0.92412 0.92248 0.92707 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.80 16 2 O -0.33 -7.55 10.05 -90.52 -0.91 -8.46 16 3 C 0.29 6.67 7.51 84.96 0.64 7.31 16 4 N -0.53 -10.48 9.21 -308.41 -2.84 -13.32 16 5 C 0.13 1.79 10.84 84.64 0.92 2.70 16 6 C -0.15 -2.12 5.89 -19.79 -0.12 -2.24 16 7 C -0.10 -0.77 10.03 71.24 0.71 -0.05 16 8 C -0.05 -1.04 8.49 22.57 0.19 -0.85 16 9 C 0.06 1.32 6.34 38.37 0.24 1.56 16 10 N -0.62 -16.29 5.18 -304.15 -1.58 -17.87 16 11 C 0.53 15.44 7.67 87.23 0.67 16.11 16 12 O -0.49 -13.40 10.48 -3.39 -0.04 -13.44 16 13 C 0.49 18.05 7.75 87.23 0.68 18.72 16 14 O -0.56 -23.74 15.92 -3.28 -0.05 -23.79 16 15 N -0.57 -21.11 2.98 -821.42 -2.45 -23.56 16 16 C 0.04 1.29 6.28 86.36 0.54 1.83 16 17 C -0.12 -3.62 6.08 30.67 0.19 -3.43 16 18 C -0.10 -3.70 5.11 30.62 0.16 -3.55 16 19 C 0.00 0.22 1.83 -11.61 -0.02 0.20 16 20 H 0.02 0.75 7.20 -2.39 -0.02 0.74 16 21 C -0.51 -28.92 9.15 25.60 0.23 -28.69 16 22 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 23 C 0.03 1.67 5.45 84.66 0.46 2.14 16 24 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 25 Si 0.93 48.67 24.32 68.60 1.67 50.34 16 26 H -0.27 -14.23 6.92 99.48 0.69 -13.54 16 27 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 28 H -0.27 -13.86 6.53 99.48 0.65 -13.21 16 29 C 0.10 4.66 5.08 86.22 0.44 5.10 16 30 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 33 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.09 0.34 8.09 -2.39 -0.02 0.32 16 36 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 37 H 0.16 3.11 6.30 -2.91 -0.02 3.09 16 38 H 0.43 11.13 8.06 -92.71 -0.75 10.38 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.16 4.36 3.70 -86.15 -0.32 4.04 16 41 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 46 H 0.05 2.73 2.35 -2.38 -0.01 2.73 16 47 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 Total: -1.00 -73.03 376.03 1.10 -71.93 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.11 Total: 17.68 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 7.11 Total: 18.66 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -6.57 Total: -112.93 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -1.00 Total: -45.69 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 1.67 Total: 50.34 kcal Total: -73.03 1.10 -71.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595083197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.947 kcal (2) G-P(sol) polarization free energy of solvation -73.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds