Wall clock time and date at job start Wed Apr 1 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36321 * 120.29725 * 2 1 4 4 C 1.40691 * 119.23139 * 180.02562 * 3 2 1 5 5 N 1.40105 * 120.09488 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99706 * 57.26689 * 5 4 3 7 7 O 1.21398 * 120.00527 * 5.07183 * 6 5 4 8 8 C 1.49319 * 120.00011 * 185.06420 * 6 5 4 9 9 O 1.21366 * 119.99727 * 6.51586 * 8 6 5 10 10 N 1.34773 * 120.00258 * 186.51338 * 8 6 5 11 11 C 1.46926 * 120.63214 * 358.12601 * 10 8 6 12 12 C 1.53181 * 108.77869 * 126.36448 * 11 10 8 13 13 C 1.53038 * 109.31429 * 54.63846 * 12 11 10 14 14 C 1.53047 * 109.53702 * 298.63377 * 13 12 11 15 15 H 1.08998 * 109.49757 * 301.38027 * 14 13 12 16 16 C 1.50701 * 109.50076 * 181.31662 * 14 13 12 17 17 H 1.08005 * 119.99626 * 359.97438 * 16 14 13 18 18 C 1.37867 * 119.99961 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00435 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99973 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47211 * 89.99207 * 20 18 16 22 22 H 1.48498 * 109.47208 * 209.99625 * 20 18 16 23 23 H 1.48504 * 109.46766 * 329.99128 * 20 18 16 24 24 C 1.46930 * 120.63092 * 177.83974 * 10 8 6 25 25 C 1.35985 * 119.80967 * 0.25216 * 4 3 2 26 26 N 1.35893 * 120.58977 * 359.48642 * 25 4 3 27 27 C 1.46497 * 119.60299 * 180.26105 * 26 25 4 28 28 C 1.34625 * 120.79151 * 0.52293 * 26 25 4 29 29 O 1.22089 * 119.91518 * 179.71888 * 28 26 25 30 30 H 1.08998 * 109.47252 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.46814 * 120.00254 * 1 2 3 32 32 H 1.08999 * 109.46708 * 240.00319 * 1 2 3 33 33 H 1.08005 * 120.38605 * 0.04044 * 3 2 1 34 34 H 0.96999 * 120.00537 * 237.53836 * 5 4 3 35 35 H 1.09002 * 109.58435 * 246.15618 * 11 10 8 36 36 H 1.09007 * 109.58501 * 6.43496 * 11 10 8 37 37 H 1.09004 * 109.50243 * 174.58760 * 12 11 10 38 38 H 1.09000 * 109.50334 * 294.68657 * 12 11 10 39 39 H 1.09001 * 109.46163 * 58.64962 * 13 12 11 40 40 H 1.08997 * 109.46767 * 178.62889 * 13 12 11 41 41 H 0.96998 * 120.00156 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.58528 * 353.42338 * 24 10 8 43 43 H 1.09009 * 109.58145 * 113.84684 * 24 10 8 44 44 H 1.08003 * 119.70285 * 179.72651 * 25 4 3 45 45 H 1.09007 * 109.46904 * 270.25471 * 27 26 25 46 46 H 1.09003 * 109.47442 * 30.25275 * 27 26 25 47 47 H 1.08996 * 109.47079 * 150.25754 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1948 1.1770 0.0000 4 6 3.6014 1.1508 -0.0005 5 7 4.3264 2.3497 -0.0011 6 6 4.1354 3.2532 0.9807 7 8 3.4049 2.9902 1.9139 8 6 4.8223 4.5776 0.9206 9 8 5.4571 4.8876 -0.0663 10 7 4.7375 5.4287 1.9621 11 6 3.9392 5.0848 3.1467 12 6 4.8214 5.2187 4.3917 13 6 5.4321 6.6214 4.4310 14 6 6.3075 6.8333 3.1936 15 1 7.0907 6.0757 3.1680 16 6 6.9341 8.2028 3.2492 17 1 6.7284 8.8572 4.0834 18 6 7.7690 8.6205 2.2347 19 7 8.0190 7.8238 1.2186 20 14 8.5463 10.3178 2.3039 21 1 9.8511 10.2363 3.0081 22 1 8.7594 10.8213 0.9233 23 1 7.6460 11.2449 3.0355 24 6 5.4466 6.7153 1.9372 25 6 4.2554 -0.0414 -0.0063 26 7 3.5623 -1.2103 -0.0010 27 6 4.2889 -2.4824 -0.0015 28 6 2.2161 -1.2133 -0.0005 29 8 1.6095 -2.2729 -0.0009 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 -0.3633 -0.5138 0.8900 33 1 1.6659 2.1187 0.0007 34 1 4.9629 2.5314 -0.7101 35 1 3.0906 5.7645 3.2253 36 1 3.5793 4.0596 3.0598 37 1 4.2170 5.0600 5.2849 38 1 5.6184 4.4760 4.3546 39 1 4.6347 7.3644 4.4431 40 1 6.0410 6.7275 5.3287 41 1 8.6067 8.1176 0.5051 42 1 6.0831 6.7647 1.0538 43 1 4.7234 7.5306 1.9152 44 1 5.3353 -0.0595 -0.0112 45 1 4.4687 -2.7977 -1.0294 46 1 5.2421 -2.3567 0.5120 47 1 3.6964 -3.2394 0.5123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595086376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:34 Heat of formation + Delta-G solvation = -48.065023 kcal Electronic energy + Delta-G solvation = -30746.538093 eV Core-core repulsion = 26509.773963 eV Total energy + Delta-G solvation = -4236.764130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.82696 -40.66011 -38.66068 -37.27751 -36.93042 -35.88703 -34.49710 -33.29314 -31.81145 -30.53977 -29.82031 -27.97052 -27.55119 -26.05607 -25.06952 -23.68870 -23.11367 -21.91410 -21.73711 -20.40365 -19.08450 -18.17776 -17.73262 -17.27330 -16.97339 -16.50673 -16.32085 -15.96213 -15.70662 -15.26498 -15.03265 -14.56903 -14.25172 -13.91853 -13.88582 -13.77487 -13.55577 -13.37177 -12.96793 -12.93668 -12.86978 -12.65074 -12.59538 -12.26678 -12.17690 -11.96989 -11.87587 -11.53008 -11.02085 -10.75476 -10.50493 -10.45477 -10.34005 -10.23451 -10.13973 -9.94794 -9.68610 -9.29135 -9.17136 -8.63279 -8.48564 -8.02181 -7.91464 -6.07207 -4.15344 0.46647 1.29417 1.72007 2.10490 2.66897 3.25567 3.26984 3.34400 3.36849 3.49694 3.78212 4.19920 4.30652 4.37451 4.51929 4.58397 4.73351 4.82326 4.86413 5.11109 5.21075 5.23573 5.50317 5.51699 5.54889 5.61914 5.66119 5.70754 5.85731 5.96658 6.01842 6.14260 6.21905 6.33215 6.53490 6.55880 6.65674 6.70653 6.78459 6.91286 6.93302 7.04619 7.10764 7.53105 7.69373 7.75762 7.84881 7.88978 8.06065 8.28239 8.46225 8.88710 9.50576 10.98355 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002335 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.565790 B =11988.371404 C =12421.330654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.196 4.196 3 C -0.011 4.011 4 C 0.045 3.955 5 N -0.645 5.645 6 C 0.516 3.484 7 O -0.497 6.497 8 C 0.496 3.504 9 O -0.521 6.521 10 N -0.562 5.562 11 C 0.047 3.953 12 C -0.130 4.130 13 C -0.114 4.114 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.107 3.893 25 C 0.115 3.885 26 N -0.491 5.491 27 C 0.061 3.939 28 C 0.516 3.484 29 O -0.549 6.549 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.423 0.577 35 H 0.059 0.941 36 H 0.145 0.855 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.264 0.736 42 H 0.125 0.875 43 H 0.050 0.950 44 H 0.168 0.832 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 -16.840 -3.289 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.201 4.201 3 C -0.034 4.034 4 C -0.052 4.052 5 N -0.296 5.296 6 C 0.300 3.700 7 O -0.372 6.372 8 C 0.276 3.724 9 O -0.398 6.398 10 N -0.294 5.294 11 C -0.074 4.074 12 C -0.169 4.169 13 C -0.151 4.151 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.557 4.557 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.013 4.013 25 C -0.014 4.014 26 N -0.202 5.202 27 C -0.080 4.080 28 C 0.317 3.683 29 O -0.431 6.431 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.156 0.844 34 H 0.262 0.738 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.068 0.932 44 H 0.186 0.814 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.329 -17.523 -3.308 20.125 hybrid contribution 1.024 1.280 -0.247 1.658 sum -8.305 -16.243 -3.556 18.586 Atomic orbital electron populations 1.20414 0.88523 1.02419 1.02872 1.20666 0.98086 0.91299 1.10046 1.21417 0.92348 0.98951 0.90663 1.16584 0.90716 0.85108 1.12827 1.42955 1.43182 1.15518 1.27976 1.21047 0.81693 0.85853 0.81397 1.90335 1.37875 1.78021 1.30989 1.19523 0.83113 0.84704 0.85052 1.90791 1.41512 1.76232 1.31297 1.48487 1.46376 1.19200 1.15333 1.23174 0.93289 1.06499 0.84456 1.21904 0.99057 0.99243 0.96659 1.21670 0.99096 0.94117 1.00260 1.18896 0.92668 0.97522 0.88768 0.95270 1.21088 1.27731 1.00084 1.06842 0.92218 1.25054 0.96139 0.97426 0.95427 1.69861 1.36440 1.35856 1.09890 0.86566 0.79669 0.84320 0.77307 1.20654 1.21145 1.19875 1.22452 0.94490 0.78746 1.05566 1.21785 0.98461 0.84220 0.96924 1.45166 1.08123 1.07321 1.59603 1.22185 0.97329 0.84499 1.04018 1.16942 0.80529 0.91140 0.79639 1.90949 1.66339 1.32816 1.53003 0.91317 0.91195 0.91061 0.84409 0.73826 0.92258 0.83884 0.92151 0.92473 0.93160 0.93041 0.92607 0.85712 0.93196 0.81446 0.90452 0.89460 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.63 36.01 0.35 -0.46 16 2 C -0.20 -2.17 5.90 -104.45 -0.62 -2.79 16 3 C -0.01 -0.12 8.67 -39.35 -0.34 -0.46 16 4 C 0.05 0.46 5.70 -83.96 -0.48 -0.02 16 5 N -0.65 -7.23 5.27 -10.46 -0.06 -7.28 16 6 C 0.52 7.56 7.60 -11.65 -0.09 7.47 16 7 O -0.50 -7.66 12.41 5.45 0.07 -7.59 16 8 C 0.50 9.17 7.76 -11.65 -0.09 9.08 16 9 O -0.52 -10.95 15.92 5.48 0.09 -10.87 16 10 N -0.56 -11.03 2.98 -173.59 -0.52 -11.55 16 11 C 0.05 0.80 6.24 -3.72 -0.02 0.77 16 12 C -0.13 -2.20 6.08 -26.62 -0.16 -2.36 16 13 C -0.11 -2.26 5.11 -26.69 -0.14 -2.40 16 14 C 0.04 0.97 2.24 -91.87 -0.21 0.77 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -13.68 8.56 -34.44 -0.29 -13.97 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.88 -24.69 11.39 55.43 0.63 -24.05 16 20 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.11 2.49 5.37 -3.93 -0.02 2.47 16 25 C 0.12 0.93 10.20 -16.56 -0.17 0.76 16 26 N -0.49 -4.44 2.99 -126.98 -0.38 -4.82 16 27 C 0.06 0.36 10.36 59.85 0.62 0.98 16 28 C 0.52 6.20 7.39 -15.46 -0.11 6.09 16 29 O -0.55 -8.07 16.07 4.84 0.08 -8.00 16 30 H 0.07 0.53 7.88 -51.93 -0.41 0.12 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.14 1.41 7.95 -52.48 -0.42 1.00 16 34 H 0.42 4.18 8.33 -40.82 -0.34 3.84 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.15 2.32 3.76 -57.05 -0.21 2.10 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.13 3.33 5.12 -51.93 -0.27 3.06 16 43 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 44 H 0.17 0.83 8.04 -52.48 -0.42 0.41 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.29 8.02 -51.93 -0.42 -0.13 16 47 H 0.10 0.68 7.38 -51.93 -0.38 0.29 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -32.70 383.96 -7.83 -40.53 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.64 Total: 4.67 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.87 Total: 7.51 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.32 Total: -47.71 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: 0.23 Total: -26.45 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.70 -7.83 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.537 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds