Wall clock time and date at job start Wed Apr 1 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36321 * 120.29725 * 2 1 4 4 C 1.40691 * 119.23139 * 180.02562 * 3 2 1 5 5 N 1.40105 * 120.09488 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99706 * 57.26689 * 5 4 3 7 7 O 1.21398 * 120.00527 * 5.07183 * 6 5 4 8 8 C 1.49319 * 120.00011 * 185.06420 * 6 5 4 9 9 O 1.21366 * 119.99727 * 6.51586 * 8 6 5 10 10 N 1.34773 * 120.00258 * 186.51338 * 8 6 5 11 11 C 1.46926 * 120.63214 * 358.12601 * 10 8 6 12 12 C 1.53181 * 108.77869 * 126.36448 * 11 10 8 13 13 C 1.53038 * 109.31429 * 54.63846 * 12 11 10 14 14 C 1.53047 * 109.53702 * 298.63377 * 13 12 11 15 15 H 1.08998 * 109.49757 * 301.38027 * 14 13 12 16 16 C 1.50701 * 109.50076 * 181.31662 * 14 13 12 17 17 H 1.08005 * 119.99626 * 359.97438 * 16 14 13 18 18 C 1.37867 * 119.99961 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00435 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99973 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47211 * 89.99207 * 20 18 16 22 22 H 1.48498 * 109.47208 * 209.99625 * 20 18 16 23 23 H 1.48504 * 109.46766 * 329.99128 * 20 18 16 24 24 C 1.46930 * 120.63092 * 177.83974 * 10 8 6 25 25 C 1.35985 * 119.80967 * 0.25216 * 4 3 2 26 26 N 1.35893 * 120.58977 * 359.48642 * 25 4 3 27 27 C 1.46497 * 119.60299 * 180.26105 * 26 25 4 28 28 C 1.34625 * 120.79151 * 0.52293 * 26 25 4 29 29 O 1.22089 * 119.91518 * 179.71888 * 28 26 25 30 30 H 1.08998 * 109.47252 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.46814 * 120.00254 * 1 2 3 32 32 H 1.08999 * 109.46708 * 240.00319 * 1 2 3 33 33 H 1.08005 * 120.38605 * 0.04044 * 3 2 1 34 34 H 0.96999 * 120.00537 * 237.53836 * 5 4 3 35 35 H 1.09002 * 109.58435 * 246.15618 * 11 10 8 36 36 H 1.09007 * 109.58501 * 6.43496 * 11 10 8 37 37 H 1.09004 * 109.50243 * 174.58760 * 12 11 10 38 38 H 1.09000 * 109.50334 * 294.68657 * 12 11 10 39 39 H 1.09001 * 109.46163 * 58.64962 * 13 12 11 40 40 H 1.08997 * 109.46767 * 178.62889 * 13 12 11 41 41 H 0.96998 * 120.00156 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.58528 * 353.42338 * 24 10 8 43 43 H 1.09009 * 109.58145 * 113.84684 * 24 10 8 44 44 H 1.08003 * 119.70285 * 179.72651 * 25 4 3 45 45 H 1.09007 * 109.46904 * 270.25471 * 27 26 25 46 46 H 1.09003 * 109.47442 * 30.25275 * 27 26 25 47 47 H 1.08996 * 109.47079 * 150.25754 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1948 1.1770 0.0000 4 6 3.6014 1.1508 -0.0005 5 7 4.3264 2.3497 -0.0011 6 6 4.1354 3.2532 0.9807 7 8 3.4049 2.9902 1.9139 8 6 4.8223 4.5776 0.9206 9 8 5.4571 4.8876 -0.0663 10 7 4.7375 5.4287 1.9621 11 6 3.9392 5.0848 3.1467 12 6 4.8214 5.2187 4.3917 13 6 5.4321 6.6214 4.4310 14 6 6.3075 6.8333 3.1936 15 1 7.0907 6.0757 3.1680 16 6 6.9341 8.2028 3.2492 17 1 6.7284 8.8572 4.0834 18 6 7.7690 8.6205 2.2347 19 7 8.0190 7.8238 1.2186 20 14 8.5463 10.3178 2.3039 21 1 9.8511 10.2363 3.0081 22 1 8.7594 10.8213 0.9233 23 1 7.6460 11.2449 3.0355 24 6 5.4466 6.7153 1.9372 25 6 4.2554 -0.0414 -0.0063 26 7 3.5623 -1.2103 -0.0010 27 6 4.2889 -2.4824 -0.0015 28 6 2.2161 -1.2133 -0.0005 29 8 1.6095 -2.2729 -0.0009 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 -0.3633 -0.5138 0.8900 33 1 1.6659 2.1187 0.0007 34 1 4.9629 2.5314 -0.7101 35 1 3.0906 5.7645 3.2253 36 1 3.5793 4.0596 3.0598 37 1 4.2170 5.0600 5.2849 38 1 5.6184 4.4760 4.3546 39 1 4.6347 7.3644 4.4431 40 1 6.0410 6.7275 5.3287 41 1 8.6067 8.1176 0.5051 42 1 6.0831 6.7647 1.0538 43 1 4.7234 7.5306 1.9152 44 1 5.3353 -0.0595 -0.0112 45 1 4.4687 -2.7977 -1.0294 46 1 5.2421 -2.3567 0.5120 47 1 3.6964 -3.2394 0.5123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595086376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:33 Heat of formation + Delta-G solvation = -69.566012 kcal Electronic energy + Delta-G solvation = -30747.470446 eV Core-core repulsion = 26509.773963 eV Total energy + Delta-G solvation = -4237.696483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.69264 -41.89828 -39.99942 -38.54739 -38.21199 -36.75271 -35.53386 -35.03802 -33.44770 -31.57150 -31.34665 -28.70988 -28.28953 -27.57862 -26.81212 -24.93809 -23.89285 -23.50856 -22.84025 -21.66468 -20.61350 -19.27089 -18.61864 -18.56037 -18.17578 -17.92417 -17.38081 -17.16429 -16.91675 -16.55273 -16.33480 -16.15428 -15.48560 -15.21527 -14.95392 -14.83603 -14.62358 -14.57093 -14.41557 -14.26840 -13.88092 -13.67619 -13.59869 -13.48286 -13.23518 -13.07098 -12.96266 -12.87219 -12.71202 -12.48154 -12.27711 -12.13694 -11.70569 -11.59471 -11.31422 -11.15366 -11.10263 -10.96628 -10.57469 -10.52405 -10.02281 -9.55080 -8.83878 -8.10893 -6.26633 -0.28465 0.18619 0.66381 1.15430 1.42844 1.44284 1.54154 1.69604 2.11044 2.42349 2.46670 2.54969 3.16679 3.22987 3.58663 3.62209 3.81512 3.98768 4.17062 4.20448 4.28341 4.34627 4.38384 4.43665 4.61067 4.69701 4.77437 4.77580 4.77726 4.81713 4.84877 4.93759 5.05310 5.08915 5.18379 5.24096 5.25153 5.28715 5.34767 5.43691 5.58416 5.61738 5.83247 5.88794 5.93287 5.97140 6.31349 6.44548 6.71673 6.83834 6.86557 6.97347 7.43057 8.92952 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002335 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.565790 B =11988.371404 C =12421.330654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.217 4.217 3 C -0.006 4.006 4 C 0.018 3.982 5 N -0.622 5.622 6 C 0.529 3.471 7 O -0.502 6.502 8 C 0.490 3.510 9 O -0.553 6.553 10 N -0.571 5.571 11 C 0.048 3.952 12 C -0.123 4.123 13 C -0.108 4.108 14 C 0.039 3.961 15 H -0.008 1.008 16 C -0.536 4.536 17 H 0.060 0.940 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 0.956 3.044 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.266 1.266 24 C 0.121 3.879 25 C 0.146 3.854 26 N -0.487 5.487 27 C 0.054 3.946 28 C 0.504 3.496 29 O -0.586 6.586 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.140 0.860 34 H 0.430 0.570 35 H 0.071 0.929 36 H 0.159 0.841 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.262 0.738 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.209 0.791 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 -17.597 -2.641 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.221 4.221 3 C -0.029 4.029 4 C -0.078 4.078 5 N -0.273 5.273 6 C 0.312 3.688 7 O -0.379 6.379 8 C 0.272 3.728 9 O -0.432 6.432 10 N -0.302 5.302 11 C -0.072 4.072 12 C -0.161 4.161 13 C -0.146 4.146 14 C 0.020 3.980 15 H 0.011 0.989 16 C -0.574 4.574 17 H 0.079 0.921 18 C -0.186 4.186 19 N -0.551 5.551 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.001 4.001 25 C 0.016 3.984 26 N -0.195 5.195 27 C -0.086 4.086 28 C 0.307 3.693 29 O -0.472 6.472 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.157 0.843 34 H 0.271 0.729 35 H 0.089 0.911 36 H 0.175 0.825 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.111 0.889 46 H 0.140 0.860 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.306 -18.317 -2.658 20.717 hybrid contribution 1.078 1.441 -0.487 1.864 sum -8.229 -16.876 -3.145 19.036 Atomic orbital electron populations 1.20418 0.88005 1.03259 1.02423 1.20755 0.98775 0.91180 1.11394 1.21462 0.92734 0.98828 0.89879 1.16627 0.90564 0.85139 1.15492 1.42649 1.42629 1.15143 1.26853 1.20081 0.81582 0.84835 0.82289 1.90310 1.38281 1.77764 1.31534 1.20175 0.82553 0.85960 0.84079 1.90769 1.42831 1.77236 1.32395 1.48470 1.46578 1.18354 1.16836 1.23398 0.93057 1.07596 0.83158 1.21871 0.99213 0.96775 0.98267 1.21569 0.98584 0.96422 0.98001 1.18826 0.92554 0.95359 0.91251 0.98936 1.21473 1.27973 1.01194 1.06761 0.92142 1.25822 0.96760 1.00898 0.95122 1.70024 1.37045 1.37536 1.10467 0.85586 0.78872 0.80186 0.77208 1.20211 1.21136 1.18990 1.21878 0.93951 0.80691 1.03558 1.22257 1.00019 0.83021 0.93152 1.45314 1.07628 1.08773 1.57805 1.22480 0.98045 0.82685 1.05414 1.17165 0.81583 0.90894 0.79625 1.90924 1.67317 1.33897 1.55015 0.89790 0.91420 0.91783 0.84260 0.72903 0.91114 0.82500 0.88555 0.93169 0.92641 0.92920 0.92897 0.89365 0.93876 0.77454 0.88905 0.86043 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.63 71.24 0.69 -0.88 16 2 C -0.22 -4.60 5.90 -19.75 -0.12 -4.72 16 3 C -0.01 -0.12 8.67 22.42 0.19 0.07 16 4 C 0.02 0.32 5.70 37.89 0.22 0.54 16 5 N -0.62 -12.60 5.27 -305.35 -1.61 -14.21 16 6 C 0.53 14.65 7.60 87.23 0.66 15.32 16 7 O -0.50 -14.37 12.41 -3.40 -0.04 -14.41 16 8 C 0.49 18.06 7.76 87.23 0.68 18.74 16 9 O -0.55 -23.69 15.92 -3.30 -0.05 -23.74 16 10 N -0.57 -22.37 2.98 -821.47 -2.45 -24.81 16 11 C 0.05 1.53 6.24 86.36 0.54 2.07 16 12 C -0.12 -3.91 6.08 30.67 0.19 -3.72 16 13 C -0.11 -4.20 5.11 30.62 0.16 -4.05 16 14 C 0.04 1.93 2.24 -11.60 -0.03 1.90 16 15 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 16 C -0.54 -28.67 8.56 25.60 0.22 -28.45 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 18 C 0.01 0.75 5.30 84.65 0.45 1.19 16 19 N -0.91 -52.57 11.39 21.44 0.24 -52.33 16 20 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 C 0.12 5.77 5.37 86.22 0.46 6.23 16 25 C 0.15 1.84 10.20 83.54 0.85 2.69 16 26 N -0.49 -7.57 2.99 -673.80 -2.01 -9.59 16 27 C 0.05 0.48 10.36 127.77 1.32 1.81 16 28 C 0.50 11.63 7.39 84.82 0.63 12.26 16 29 O -0.59 -17.23 16.07 -5.61 -0.09 -17.32 16 30 H 0.08 1.24 7.88 -2.39 -0.02 1.22 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.14 2.66 7.95 -2.91 -0.02 2.63 16 34 H 0.43 7.64 8.33 -92.71 -0.77 6.86 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.16 4.69 3.76 -83.60 -0.31 4.38 16 37 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.09 4.92 5.12 -2.39 -0.01 4.91 16 43 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.21 0.96 8.04 -2.91 -0.02 0.93 16 45 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 46 H 0.12 0.28 8.02 -2.39 -0.02 0.26 16 47 H 0.08 1.04 7.38 -2.39 -0.02 1.02 16 Total: -1.00 -73.90 383.96 3.06 -70.84 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -0.07 Total: 19.73 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 7.11 Total: 21.00 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -5.82 Total: -100.93 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -0.18 Total: -55.48 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -73.90 3.06 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.276 kcal (2) G-P(sol) polarization free energy of solvation -73.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds