Wall clock time and date at job start Wed Apr 1 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38881 * 120.33588 * 2 1 4 4 C 1.38304 * 118.50808 * 180.02562 * 3 2 1 5 5 C 1.39134 * 119.09592 * 359.97438 * 4 3 2 6 6 N 1.39002 * 119.70708 * 179.97438 * 5 4 3 7 7 C 1.46842 * 110.99918 * 180.02562 * 6 5 4 8 8 C 1.53036 * 109.52190 * 185.84375 * 7 6 5 9 9 C 1.53123 * 109.27788 * 300.81892 * 8 7 6 10 10 C 1.50697 * 109.52570 * 177.56259 * 9 8 7 11 11 O 1.20830 * 120.00074 * 359.97438 * 10 9 8 12 12 O 1.34220 * 120.00300 * 180.02562 * 10 9 8 13 13 C 1.45205 * 117.00525 * 179.97438 * 12 10 9 14 14 C 1.50690 * 109.47502 * 179.97438 * 13 12 10 15 15 O 1.21294 * 120.00047 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00228 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00302 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99825 * 0.02562 * 17 16 14 19 19 C 1.38943 * 120.00020 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00306 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00149 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46684 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47027 * 119.99629 * 21 19 17 24 24 H 1.48492 * 109.47033 * 239.99969 * 21 19 17 25 25 C 1.53123 * 109.16001 * 57.65365 * 9 8 7 26 26 C 1.46848 * 111.00054 * 304.21848 * 6 5 4 27 27 N 1.32404 * 120.58634 * 0.28633 * 5 4 3 28 28 C 1.31964 * 121.62284 * 359.42613 * 27 5 4 29 29 H 1.09003 * 109.46781 * 90.00080 * 1 2 3 30 30 H 1.08997 * 109.47571 * 210.00257 * 1 2 3 31 31 H 1.09003 * 109.47227 * 330.00904 * 1 2 3 32 32 H 1.08003 * 120.74596 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.45167 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.46766 * 65.82708 * 7 6 5 35 35 H 1.09000 * 109.46420 * 305.85441 * 7 6 5 36 36 H 1.09000 * 109.50632 * 60.76184 * 8 7 6 37 37 H 1.09006 * 109.50216 * 180.87978 * 8 7 6 38 38 H 1.09007 * 109.52268 * 297.75177 * 9 8 7 39 39 H 1.09001 * 109.46996 * 300.00344 * 13 12 10 40 40 H 1.09005 * 109.46845 * 59.99854 * 13 12 10 41 41 H 0.97000 * 119.99369 * 359.97438 * 16 14 13 42 42 H 0.96996 * 120.00602 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.50416 * 182.40514 * 25 9 8 44 44 H 1.08997 * 109.49749 * 62.28489 * 25 9 8 45 45 H 1.09003 * 109.46014 * 294.17602 * 26 6 5 46 46 H 1.08995 * 109.46374 * 54.13632 * 26 6 5 47 47 H 1.08000 * 119.57263 * 180.29456 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5907 1.1545 -0.0005 5 6 4.2282 -0.0822 -0.0005 6 7 5.6169 -0.1413 -0.0016 7 6 6.0843 -1.5334 -0.0020 8 6 7.6075 -1.5614 0.1437 9 6 8.2407 -0.7905 -1.0179 10 6 9.7378 -0.7635 -0.8478 11 8 10.2475 -1.3047 0.1047 12 8 10.5051 -0.1375 -1.7539 13 6 11.9390 -0.1512 -1.5258 14 6 12.6317 0.5941 -2.6374 15 8 11.9809 1.0886 -3.5335 16 7 13.9744 0.7111 -2.6358 17 6 14.6046 1.3896 -3.6469 18 1 14.0250 1.8307 -4.4443 19 6 15.9888 1.5098 -3.6455 20 7 16.6940 0.9736 -2.6749 21 14 16.8475 2.4337 -5.0234 22 1 15.8360 2.9379 -5.9867 23 1 17.6045 3.5781 -4.4555 24 1 17.7845 1.5191 -5.7237 25 6 7.7005 0.6423 -1.0240 26 6 6.1746 0.6060 -1.1360 27 7 3.5237 -1.2032 -0.0057 28 6 2.2041 -1.1912 0.0003 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5137 32 1 1.6861 2.1440 -0.0004 33 1 4.1675 2.0677 -0.0001 34 1 5.8003 -2.0117 -0.9394 35 1 5.6300 -2.0693 0.8313 36 1 7.8915 -1.0957 1.0873 37 1 7.9556 -2.5943 0.1276 38 1 7.9889 -1.2787 -1.9594 39 1 12.1599 0.3295 -0.5728 40 1 12.2936 -1.1817 -1.5037 41 1 14.4948 0.3159 -1.9190 42 1 17.6603 1.0578 -2.6737 43 1 8.1150 1.1839 -1.8742 44 1 7.9859 1.1426 -0.0987 45 1 5.8901 0.1174 -2.0679 46 1 5.7857 1.6242 -1.1266 47 1 1.6626 -2.1257 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731245690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:17 Heat of formation + Delta-G solvation = -83.349936 kcal Electronic energy + Delta-G solvation = -29236.897684 eV Core-core repulsion = 24998.603485 eV Total energy + Delta-G solvation = -4238.294199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20113 -40.42761 -38.74212 -38.03951 -36.13715 -34.70227 -34.00078 -33.10733 -31.79523 -31.37425 -31.03615 -28.63408 -27.31026 -25.39124 -24.65918 -24.30952 -22.75419 -22.11916 -21.10541 -19.85994 -19.57144 -18.07558 -18.01941 -17.50700 -16.91108 -16.39167 -16.31211 -15.60894 -15.53389 -15.35686 -14.83588 -14.74050 -14.57247 -14.24475 -14.13828 -13.94587 -13.67894 -13.51414 -13.44537 -13.12981 -12.92416 -12.84403 -12.48113 -12.22311 -12.11695 -12.04081 -11.64201 -11.61687 -11.47626 -11.15567 -11.05204 -10.82104 -10.39467 -10.39286 -10.33736 -10.24040 -10.12748 -10.05291 -9.75186 -9.61892 -8.52070 -8.30460 -8.08472 -6.50245 -3.92330 0.77938 0.95493 2.31686 2.71719 3.10189 3.11460 3.23585 3.31008 3.49479 3.73717 4.09024 4.10510 4.35182 4.44018 4.45854 4.55036 4.57491 4.65407 4.77567 4.84455 4.94566 5.01881 5.10482 5.13925 5.15042 5.15749 5.19856 5.29933 5.36399 5.43055 5.47479 5.48962 5.58728 5.64204 5.68763 5.70433 5.79657 5.91140 5.94512 6.06117 6.06833 6.19218 6.43752 6.65769 6.86653 7.47660 7.67941 7.85931 7.97189 8.48387 9.06970 9.39334 9.89168 10.67039 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029283 B = 0.001631 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.954647 B =17158.505488 C =17847.936958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.172 4.172 3 C -0.055 4.055 4 C -0.182 4.182 5 C 0.310 3.690 6 N -0.478 5.478 7 C 0.070 3.930 8 C -0.105 4.105 9 C -0.081 4.081 10 C 0.463 3.537 11 O -0.512 6.512 12 O -0.325 6.325 13 C 0.060 3.940 14 C 0.439 3.561 15 O -0.576 6.576 16 N -0.553 5.553 17 C -0.302 4.302 18 H 0.107 0.893 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.111 4.111 26 C 0.063 3.937 27 N -0.518 5.518 28 C 0.126 3.874 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.395 0.605 42 H 0.273 0.727 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.018 -3.028 7.432 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.175 4.175 3 C -0.081 4.081 4 C -0.205 4.205 5 C 0.078 3.922 6 N -0.195 5.195 7 C -0.056 4.056 8 C -0.143 4.143 9 C -0.100 4.100 10 C 0.305 3.695 11 O -0.400 6.400 12 O -0.239 6.239 13 C -0.018 4.018 14 C 0.223 3.777 15 O -0.460 6.460 16 N -0.190 5.190 17 C -0.431 4.431 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.537 5.537 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.149 4.149 26 C -0.063 4.063 27 N -0.231 5.231 28 C -0.032 4.032 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.228 0.772 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -28.343 -3.419 7.532 29.525 hybrid contribution 0.404 0.550 -0.564 0.885 sum -27.938 -2.869 6.969 28.937 Atomic orbital electron populations 1.20645 0.90312 1.02902 1.02353 1.20782 0.97527 0.94136 1.05063 1.21350 0.93484 0.98193 0.95039 1.21591 0.94997 0.97935 1.05961 1.19847 0.89460 0.89326 0.93520 1.59107 1.03118 1.15919 1.41386 1.21991 0.94167 0.86552 1.02913 1.21608 0.93403 1.01148 0.98110 1.21130 0.87267 0.99347 1.02261 1.23628 0.90694 0.75044 0.80095 1.90652 1.75434 1.42851 1.31095 1.86544 1.19626 1.68757 1.48961 1.22742 0.77110 1.02116 0.99799 1.19330 0.83406 0.86684 0.88236 1.90557 1.64781 1.52074 1.38619 1.41718 1.04003 1.48648 1.24674 1.19777 0.89791 1.30209 1.03358 0.87561 1.25310 0.96382 0.97720 0.98340 1.69621 1.07534 1.44463 1.32128 0.85745 0.79114 0.78857 0.80305 1.19100 1.20621 1.20631 1.21648 0.93599 0.94688 1.04944 1.22284 0.95059 0.98842 0.90098 1.67622 1.08729 1.30242 1.16538 1.22417 0.88947 0.97519 0.94334 0.91226 0.91394 0.91538 0.84788 0.84487 0.92940 0.88999 0.89858 0.89897 0.87363 0.89588 0.89624 0.77169 0.91681 0.88549 0.90002 0.92994 0.89172 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 10.03 36.00 0.36 -0.07 16 2 C -0.17 -1.18 5.90 -104.46 -0.62 -1.80 16 3 C -0.05 -0.38 9.85 -39.32 -0.39 -0.77 16 4 C -0.18 -1.51 9.18 -39.22 -0.36 -1.87 16 5 C 0.31 3.12 6.41 -155.02 -0.99 2.13 16 6 N -0.48 -4.75 4.68 -173.24 -0.81 -5.56 16 7 C 0.07 0.69 4.65 -3.84 -0.02 0.67 16 8 C -0.10 -1.10 4.68 -26.65 -0.12 -1.23 16 9 C -0.08 -0.93 2.70 -91.65 -0.25 -1.17 16 10 C 0.46 7.18 7.26 36.00 0.26 7.44 16 11 O -0.51 -8.90 15.73 -18.75 -0.29 -9.19 16 12 O -0.32 -5.95 9.69 -45.88 -0.44 -6.39 16 13 C 0.06 1.14 5.94 36.00 0.21 1.36 16 14 C 0.44 10.55 7.86 -10.99 -0.09 10.47 16 15 O -0.58 -15.90 16.08 -14.11 -0.23 -16.13 16 16 N -0.55 -13.98 5.29 -10.97 -0.06 -14.04 16 17 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 18 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 21 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 C -0.11 -1.14 5.31 -26.65 -0.14 -1.28 16 26 C 0.06 0.55 5.24 -3.83 -0.02 0.53 16 27 N -0.52 -5.34 8.68 -12.44 -0.11 -5.44 16 28 C 0.13 1.02 10.85 -17.57 -0.19 0.83 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.14 0.94 7.14 -52.48 -0.37 0.57 16 34 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.09 0.94 7.71 -51.93 -0.40 0.54 16 36 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.51 8.13 -51.93 -0.42 1.08 16 40 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 41 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.67 6.67 -51.93 -0.35 0.32 16 47 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -33.40 393.57 -9.76 -43.16 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.86 Total: 8.03 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -2.59 Total: 7.33 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.25 Total: -48.37 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.97 Total: -31.71 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.40 -9.76 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.191 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds