Wall clock time and date at job start Wed Apr 1 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38881 * 120.33588 * 2 1 4 4 C 1.38304 * 118.50808 * 180.02562 * 3 2 1 5 5 C 1.39134 * 119.09592 * 359.97438 * 4 3 2 6 6 N 1.39002 * 119.70708 * 179.97438 * 5 4 3 7 7 C 1.46842 * 110.99918 * 180.02562 * 6 5 4 8 8 C 1.53036 * 109.52190 * 185.84375 * 7 6 5 9 9 C 1.53123 * 109.27788 * 300.81892 * 8 7 6 10 10 C 1.50697 * 109.52570 * 177.56259 * 9 8 7 11 11 O 1.20830 * 120.00074 * 359.97438 * 10 9 8 12 12 O 1.34220 * 120.00300 * 180.02562 * 10 9 8 13 13 C 1.45205 * 117.00525 * 179.97438 * 12 10 9 14 14 C 1.50690 * 109.47502 * 179.97438 * 13 12 10 15 15 O 1.21294 * 120.00047 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00228 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00302 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99825 * 0.02562 * 17 16 14 19 19 C 1.38943 * 120.00020 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00306 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00149 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46684 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47027 * 119.99629 * 21 19 17 24 24 H 1.48492 * 109.47033 * 239.99969 * 21 19 17 25 25 C 1.53123 * 109.16001 * 57.65365 * 9 8 7 26 26 C 1.46848 * 111.00054 * 304.21848 * 6 5 4 27 27 N 1.32404 * 120.58634 * 0.28633 * 5 4 3 28 28 C 1.31964 * 121.62284 * 359.42613 * 27 5 4 29 29 H 1.09003 * 109.46781 * 90.00080 * 1 2 3 30 30 H 1.08997 * 109.47571 * 210.00257 * 1 2 3 31 31 H 1.09003 * 109.47227 * 330.00904 * 1 2 3 32 32 H 1.08003 * 120.74596 * 359.97438 * 3 2 1 33 33 H 1.08004 * 120.45167 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.46766 * 65.82708 * 7 6 5 35 35 H 1.09000 * 109.46420 * 305.85441 * 7 6 5 36 36 H 1.09000 * 109.50632 * 60.76184 * 8 7 6 37 37 H 1.09006 * 109.50216 * 180.87978 * 8 7 6 38 38 H 1.09007 * 109.52268 * 297.75177 * 9 8 7 39 39 H 1.09001 * 109.46996 * 300.00344 * 13 12 10 40 40 H 1.09005 * 109.46845 * 59.99854 * 13 12 10 41 41 H 0.97000 * 119.99369 * 359.97438 * 16 14 13 42 42 H 0.96996 * 120.00602 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.50416 * 182.40514 * 25 9 8 44 44 H 1.08997 * 109.49749 * 62.28489 * 25 9 8 45 45 H 1.09003 * 109.46014 * 294.17602 * 26 6 5 46 46 H 1.08995 * 109.46374 * 54.13632 * 26 6 5 47 47 H 1.08000 * 119.57263 * 180.29456 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5907 1.1545 -0.0005 5 6 4.2282 -0.0822 -0.0005 6 7 5.6169 -0.1413 -0.0016 7 6 6.0843 -1.5334 -0.0020 8 6 7.6075 -1.5614 0.1437 9 6 8.2407 -0.7905 -1.0179 10 6 9.7378 -0.7635 -0.8478 11 8 10.2475 -1.3047 0.1047 12 8 10.5051 -0.1375 -1.7539 13 6 11.9390 -0.1512 -1.5258 14 6 12.6317 0.5941 -2.6374 15 8 11.9809 1.0886 -3.5335 16 7 13.9744 0.7111 -2.6358 17 6 14.6046 1.3896 -3.6469 18 1 14.0250 1.8307 -4.4443 19 6 15.9888 1.5098 -3.6455 20 7 16.6940 0.9736 -2.6749 21 14 16.8475 2.4337 -5.0234 22 1 15.8360 2.9379 -5.9867 23 1 17.6045 3.5781 -4.4555 24 1 17.7845 1.5191 -5.7237 25 6 7.7005 0.6423 -1.0240 26 6 6.1746 0.6060 -1.1360 27 7 3.5237 -1.2032 -0.0057 28 6 2.2041 -1.1912 0.0003 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8901 0.5137 32 1 1.6861 2.1440 -0.0004 33 1 4.1675 2.0677 -0.0001 34 1 5.8003 -2.0117 -0.9394 35 1 5.6300 -2.0693 0.8313 36 1 7.8915 -1.0957 1.0873 37 1 7.9556 -2.5943 0.1276 38 1 7.9889 -1.2787 -1.9594 39 1 12.1599 0.3295 -0.5728 40 1 12.2936 -1.1817 -1.5037 41 1 14.4948 0.3159 -1.9190 42 1 17.6603 1.0578 -2.6737 43 1 8.1150 1.1839 -1.8742 44 1 7.9859 1.1426 -0.0987 45 1 5.8901 0.1174 -2.0679 46 1 5.7857 1.6242 -1.1266 47 1 1.6626 -2.1257 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731245690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:17 Heat of formation + Delta-G solvation = -103.003031 kcal Electronic energy + Delta-G solvation = -29237.749906 eV Core-core repulsion = 24998.603485 eV Total energy + Delta-G solvation = -4239.146421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06678 -41.50062 -40.14524 -39.33635 -37.55228 -36.03516 -35.46117 -33.74767 -33.41931 -32.44528 -31.76477 -30.18348 -28.08231 -26.70010 -25.87162 -25.16682 -23.46825 -22.93419 -22.02892 -21.43513 -20.80395 -20.07773 -18.93441 -18.60332 -17.92957 -17.71090 -17.50079 -17.22842 -16.47486 -16.19731 -16.10368 -15.85427 -15.79332 -15.39616 -15.29305 -14.88591 -14.66200 -14.53536 -14.43539 -14.02239 -13.81280 -13.69332 -13.57130 -13.49489 -13.22860 -13.16099 -12.94556 -12.67187 -12.49484 -12.46888 -12.29702 -12.11013 -11.95695 -11.84125 -11.66400 -11.58668 -11.45181 -10.73919 -10.69132 -10.51283 -10.37025 -10.12171 -8.93798 -8.52832 -6.03581 0.19040 0.38823 1.06477 1.34474 1.34985 1.45193 1.59042 1.86231 2.29416 2.44425 2.87376 3.01357 3.12694 3.44897 3.46925 3.65479 3.67203 3.95465 3.98036 4.03644 4.11744 4.14703 4.15680 4.16157 4.21119 4.23197 4.26939 4.36981 4.53395 4.61468 4.66378 4.72672 4.84479 4.89113 4.94527 4.95900 5.06181 5.09806 5.19824 5.22490 5.33214 5.37268 5.41887 5.64262 5.73350 5.88633 6.19578 6.44847 6.62266 7.02490 7.06209 7.39302 7.92563 8.64397 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029283 B = 0.001631 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.954647 B =17158.505488 C =17847.936958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.168 4.168 3 C -0.058 4.058 4 C -0.189 4.189 5 C 0.286 3.714 6 N -0.485 5.485 7 C 0.081 3.919 8 C -0.096 4.096 9 C -0.075 4.075 10 C 0.465 3.535 11 O -0.530 6.530 12 O -0.340 6.340 13 C 0.070 3.930 14 C 0.437 3.563 15 O -0.616 6.616 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.085 0.915 19 C -0.008 4.008 20 N -0.916 5.916 21 Si 0.999 3.001 22 H -0.271 1.271 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.106 4.106 26 C 0.068 3.932 27 N -0.542 5.542 28 C 0.108 3.892 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.399 0.601 42 H 0.281 0.719 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.106 0.894 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.404 -2.628 7.487 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.171 4.171 3 C -0.084 4.084 4 C -0.211 4.211 5 C 0.055 3.945 6 N -0.203 5.203 7 C -0.046 4.046 8 C -0.133 4.133 9 C -0.094 4.094 10 C 0.309 3.691 11 O -0.420 6.420 12 O -0.255 6.255 13 C -0.007 4.007 14 C 0.224 3.776 15 O -0.503 6.503 16 N -0.196 5.196 17 C -0.467 4.467 18 H 0.103 0.897 19 C -0.209 4.209 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.143 4.143 26 C -0.057 4.057 27 N -0.256 5.256 28 C -0.049 4.049 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.234 0.766 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.124 0.876 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -29.737 -3.038 7.620 30.847 hybrid contribution 0.731 0.399 -0.532 0.988 sum -29.006 -2.639 7.088 29.976 Atomic orbital electron populations 1.20701 0.88253 1.03914 1.03139 1.21121 0.99015 0.93662 1.03332 1.21715 0.93133 0.99412 0.94159 1.21791 0.95834 0.97706 1.05772 1.20006 0.89380 0.90060 0.95067 1.59148 1.03627 1.15688 1.41865 1.21833 0.93237 0.86945 1.02601 1.21531 0.93873 1.00916 0.97025 1.21274 0.84227 1.00567 1.03380 1.24374 0.91723 0.73871 0.79124 1.90641 1.75975 1.43635 1.31726 1.86556 1.19117 1.69639 1.50212 1.22508 0.77777 1.02377 0.98055 1.20089 0.82987 0.85854 0.88689 1.90522 1.65534 1.53678 1.40545 1.41753 1.04650 1.48680 1.24479 1.19772 0.90618 1.32162 1.04163 0.89697 1.26125 0.96351 0.97931 1.00506 1.69678 1.08151 1.44578 1.33150 0.84792 0.77818 0.77908 0.77334 1.19518 1.19456 1.19504 1.21598 0.94713 0.93590 1.04441 1.22256 0.93716 0.99741 0.89989 1.67573 1.09879 1.30797 1.17321 1.22819 0.88537 0.98963 0.94564 0.90412 0.90497 0.90476 0.82273 0.83430 0.92991 0.89568 0.91041 0.89693 0.85827 0.87761 0.87788 0.76619 0.90981 0.89076 0.90495 0.92821 0.87603 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.03 71.23 0.71 0.13 16 2 C -0.17 -1.99 5.90 -19.76 -0.12 -2.11 16 3 C -0.06 -0.69 9.85 22.44 0.22 -0.47 16 4 C -0.19 -2.88 9.18 22.50 0.21 -2.67 16 5 C 0.29 5.55 6.41 133.06 0.85 6.40 16 6 N -0.49 -9.37 4.68 -702.00 -3.29 -12.66 16 7 C 0.08 1.56 4.65 86.33 0.40 1.96 16 8 C -0.10 -1.97 4.68 30.65 0.14 -1.83 16 9 C -0.08 -1.68 2.70 -11.46 -0.03 -1.72 16 10 C 0.46 14.21 7.26 71.23 0.52 14.73 16 11 O -0.53 -18.16 15.73 21.95 0.35 -17.82 16 12 O -0.34 -12.40 9.69 -44.97 -0.44 -12.83 16 13 C 0.07 2.66 5.94 71.23 0.42 3.08 16 14 C 0.44 21.35 7.86 87.65 0.69 22.04 16 15 O -0.62 -34.82 16.08 15.73 0.25 -34.57 16 16 N -0.56 -28.68 5.29 -306.99 -1.62 -30.30 16 17 C -0.34 -18.98 9.68 84.04 0.81 -18.16 16 18 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 19 C -0.01 -0.44 5.50 84.92 0.47 0.02 16 20 N -0.92 -48.62 13.05 21.66 0.28 -48.34 16 21 Si 1.00 41.95 29.55 68.60 2.03 43.98 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 25 C -0.11 -2.11 5.31 30.65 0.16 -1.95 16 26 C 0.07 1.15 5.24 86.33 0.45 1.60 16 27 N -0.54 -10.87 8.68 -193.26 -1.68 -12.55 16 28 C 0.11 1.64 10.85 84.62 0.92 2.55 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.32 8.09 -2.39 -0.02 0.30 16 31 H 0.08 0.30 8.09 -2.39 -0.02 0.28 16 32 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.15 1.81 7.14 -2.91 -0.02 1.79 16 34 H 0.05 1.00 8.11 -2.39 -0.02 0.98 16 35 H 0.09 1.77 7.71 -2.39 -0.02 1.75 16 36 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 37 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.10 3.57 8.13 -2.39 -0.02 3.55 16 40 H 0.10 3.57 8.13 -2.38 -0.02 3.55 16 41 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 42 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 43 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 45 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.11 1.43 6.67 -2.39 -0.02 1.42 16 47 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -71.93 393.57 2.98 -68.95 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.26 Total: 32.53 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 6.84 Total: 23.62 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -6.30 Total: -103.85 kcal Atomic # 8 Polarization: -65.38 SS G_CDS: 0.16 Total: -65.22 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -71.93 2.98 -68.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.057 kcal (2) G-P(sol) polarization free energy of solvation -71.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds