Wall clock time and date at job start Wed Apr 1 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53117 * 109.52731 * 2 1 4 4 C 1.53036 * 109.28161 * 177.62690 * 3 2 1 5 5 N 1.46846 * 109.52042 * 300.81885 * 4 3 2 6 6 C 1.38472 * 110.99850 * 185.84373 * 5 4 3 7 7 C 1.39414 * 119.52985 * 180.02562 * 6 5 4 8 8 C 1.36840 * 119.38325 * 179.97438 * 7 6 5 9 9 C 1.40411 * 118.49149 * 359.97438 * 8 7 6 10 10 C 1.47434 * 120.48538 * 179.97438 * 9 8 7 11 11 O 1.21633 * 119.99808 * 351.32539 * 10 9 8 12 12 N 1.34772 * 120.00144 * 171.31770 * 10 9 8 13 13 C 1.36908 * 119.99990 * 174.46231 * 12 10 9 14 14 H 1.07998 * 120.00282 * 42.89617 * 13 12 10 15 15 C 1.39024 * 119.99938 * 223.16902 * 13 12 10 16 16 N 1.31386 * 119.99810 * 358.53974 * 15 13 12 17 17 Si 1.86795 * 119.99866 * 178.53546 * 15 13 12 18 18 H 1.48499 * 109.47326 * 60.00339 * 17 15 13 19 19 H 1.48503 * 109.47233 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47556 * 300.00119 * 17 15 13 21 21 C 1.46504 * 119.99770 * 354.46607 * 12 10 9 22 22 C 1.50697 * 109.47029 * 311.71268 * 21 12 10 23 23 O 1.20821 * 120.00306 * 0.02562 * 22 21 12 24 24 O 1.34237 * 119.99620 * 179.97438 * 22 21 12 25 25 C 1.39629 * 119.03172 * 0.24869 * 9 8 7 26 26 N 1.31672 * 120.51182 * 359.50591 * 25 9 8 27 27 C 1.46843 * 111.19904 * 61.74134 * 5 4 3 28 28 C 1.53032 * 109.52528 * 298.25775 * 27 5 4 29 29 H 1.08994 * 109.47569 * 59.99881 * 1 2 3 30 30 H 1.09004 * 109.47593 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47055 * 299.99812 * 1 2 3 32 32 H 1.09005 * 109.52335 * 239.87326 * 2 1 3 33 33 H 1.09001 * 109.49998 * 57.67975 * 3 2 1 34 34 H 1.09005 * 109.49854 * 297.57050 * 3 2 1 35 35 H 1.08998 * 109.45732 * 180.80695 * 4 3 2 36 36 H 1.08997 * 109.46384 * 60.83776 * 4 3 2 37 37 H 1.07992 * 120.31025 * 0.02562 * 7 6 5 38 38 H 1.07998 * 120.75569 * 180.02562 * 8 7 6 39 39 H 0.97002 * 119.99404 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47315 * 71.72097 * 21 12 10 41 41 H 1.09007 * 109.46425 * 191.71635 * 21 12 10 42 42 H 0.96703 * 116.99508 * 180.02562 * 24 22 21 43 43 H 1.08004 * 119.74095 * 179.74616 * 25 9 8 44 44 H 1.09000 * 109.45879 * 58.27401 * 27 5 4 45 45 H 1.09003 * 109.46320 * 178.23547 * 27 5 4 46 46 H 1.08998 * 109.50558 * 299.23381 * 28 27 5 47 47 H 1.09003 * 109.50192 * 179.12013 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4370 0.0598 5 7 4.0116 0.7424 1.2763 6 6 5.3850 0.8318 1.4288 7 6 5.9947 0.2312 2.5293 8 6 7.3521 0.3209 2.6768 9 6 8.0866 1.0202 1.7057 10 6 9.5511 1.1446 1.8214 11 8 10.1141 0.7801 2.8361 12 7 10.2661 1.6621 0.8029 13 6 11.6090 1.8830 0.9519 14 1 12.2273 1.1428 1.4378 15 6 12.1756 3.0627 0.4829 16 7 11.4277 3.9529 -0.1289 17 14 14.0004 3.3821 0.7228 18 1 14.7826 2.3154 0.0479 19 1 14.3532 4.7006 0.1377 20 1 14.3161 3.3846 2.1739 21 6 9.6062 1.9883 -0.4638 22 6 8.7554 0.8240 -0.9015 23 8 8.7051 -0.1756 -0.2246 24 8 8.0528 0.8978 -2.0428 25 6 7.4091 1.6010 0.6318 26 7 6.1017 1.4866 0.5255 27 6 3.5721 -0.6587 1.2765 28 6 2.0430 -0.7151 1.2530 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8942 -0.5157 -0.8886 33 1 1.6456 1.9696 0.8683 34 1 1.7151 1.9450 -0.9109 35 1 3.9378 2.4632 0.0744 36 1 3.9666 0.9224 -0.8158 37 1 5.4013 -0.3008 3.2581 38 1 7.8474 -0.1364 3.5205 39 1 11.8231 4.7761 -0.4558 40 1 8.9768 2.8681 -0.3296 41 1 10.3601 2.1935 -1.2239 42 1 7.5214 0.1260 -2.2819 43 1 7.9622 2.1451 -0.1196 44 1 3.9678 -1.1635 0.3952 45 1 3.9401 -1.1546 2.1747 46 1 1.6469 -0.2226 2.1410 47 1 1.7174 -1.7553 1.2374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736798693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:37 Heat of formation + Delta-G solvation = -14.275329 kcal Electronic energy + Delta-G solvation = -32001.640333 eV Core-core repulsion = 27766.341434 eV Total energy + Delta-G solvation = -4235.298899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48910 -40.13026 -38.54428 -37.80289 -35.73444 -34.93340 -34.71584 -32.35180 -32.06473 -30.92235 -30.25942 -28.44289 -27.64706 -25.17242 -24.07749 -23.36572 -22.32549 -21.83516 -21.43005 -19.92020 -19.52964 -17.78913 -17.68596 -17.16674 -17.04698 -16.32098 -15.76203 -15.58979 -14.90930 -14.86251 -14.69366 -14.58389 -14.33703 -14.14369 -13.84909 -13.62820 -13.31538 -13.08904 -12.85303 -12.64654 -12.56317 -12.31193 -12.30576 -12.14799 -11.92817 -11.65075 -11.40416 -11.27518 -11.12727 -10.91593 -10.89193 -10.84594 -10.55767 -10.47561 -10.44725 -10.06513 -9.49722 -9.44820 -9.22267 -9.03656 -8.60443 -7.77801 -7.65649 -6.56195 -4.25601 1.18245 1.67712 2.73340 3.14437 3.18437 3.20520 3.31746 3.50990 3.84490 4.04060 4.46425 4.49974 4.56717 4.57951 4.60880 4.73007 4.98297 5.04748 5.14629 5.20397 5.28617 5.32067 5.38294 5.41650 5.42269 5.45720 5.52291 5.54387 5.64664 5.67761 5.78290 5.82414 5.90879 5.94256 5.96954 6.02944 6.06332 6.20018 6.28179 6.41795 6.57384 6.71359 6.84324 6.88161 7.35050 7.39296 8.06743 8.24093 8.24329 8.33127 8.97141 9.08800 9.74053 10.53969 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023178 B = 0.002893 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.745413 B = 9676.006554 C =10170.417537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.115 4.115 4 C 0.068 3.932 5 N -0.474 5.474 6 C 0.299 3.701 7 C -0.189 4.189 8 C -0.018 4.018 9 C -0.145 4.145 10 C 0.531 3.469 11 O -0.564 6.564 12 N -0.430 5.430 13 C -0.310 4.310 14 H 0.096 0.904 15 C 0.041 3.959 16 N -0.883 5.883 17 Si 0.933 3.067 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.125 3.875 22 C 0.454 3.546 23 O -0.510 6.510 24 O -0.517 6.517 25 C 0.072 3.928 26 N -0.512 5.512 27 C 0.059 3.941 28 C -0.111 4.111 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.276 0.724 40 H 0.111 0.889 41 H 0.131 0.869 42 H 0.399 0.601 43 H 0.205 0.795 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.872 -4.916 -3.862 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.153 4.153 4 C -0.059 4.059 5 N -0.192 5.192 6 C 0.068 3.932 7 C -0.212 4.212 8 C -0.045 4.045 9 C -0.151 4.151 10 C 0.321 3.679 11 O -0.447 6.447 12 N -0.150 5.150 13 C -0.437 4.437 14 H 0.113 0.887 15 C -0.164 4.164 16 N -0.520 5.520 17 Si 0.759 3.241 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.194 1.194 21 C 0.000 4.000 22 C 0.297 3.703 23 O -0.398 6.398 24 O -0.327 6.327 25 C -0.085 4.085 26 N -0.228 5.228 27 C -0.067 4.067 28 C -0.149 4.149 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.149 0.851 42 H 0.257 0.743 43 H 0.219 0.781 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.002 -4.246 -3.476 18.820 hybrid contribution 1.133 -0.939 -0.056 1.472 sum -16.869 -5.184 -3.533 17.998 Atomic orbital electron populations 1.21798 0.95027 1.01557 1.01833 1.21223 0.95669 0.96472 0.98177 1.21744 0.94887 0.96289 1.02377 1.21945 0.94291 1.00226 0.89438 1.58951 1.07502 1.14525 1.38207 1.19825 0.88556 0.93766 0.91096 1.21111 0.95109 1.05488 0.99444 1.21169 0.92719 0.93330 0.97237 1.21090 0.96221 1.00982 0.96808 1.17820 0.85025 0.81618 0.83452 1.90616 1.71688 1.52157 1.30219 1.42932 1.08357 1.56894 1.06788 1.19449 0.81868 1.02534 1.39885 0.88654 1.25624 1.00893 0.94313 0.95542 1.69740 1.36657 1.09136 1.36481 0.85888 0.81336 0.77624 0.79266 1.19641 1.20717 1.19446 1.21626 0.96945 0.89943 0.91503 1.24441 0.77587 0.90652 0.77628 1.90787 1.61991 1.33709 1.53292 1.84601 1.58610 1.47720 1.41815 1.25121 0.90174 0.95825 0.97395 1.67710 1.07731 1.19904 1.27427 1.22247 0.96102 0.86431 1.01921 1.21677 0.93888 1.00609 0.98723 0.92702 0.92819 0.92591 0.91415 0.91139 0.91214 0.89434 0.93492 0.85050 0.84160 0.91403 0.87255 0.85075 0.74346 0.78059 0.93892 0.89903 0.90814 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.20 37.15 0.34 -0.63 16 2 C -0.10 -0.79 2.79 -90.50 -0.25 -1.05 16 3 C -0.12 -1.07 5.38 -26.65 -0.14 -1.21 16 4 C 0.07 0.83 4.64 -3.83 -0.02 0.81 16 5 N -0.47 -6.34 4.66 -173.27 -0.81 -7.15 16 6 C 0.30 4.93 6.40 -155.26 -0.99 3.93 16 7 C -0.19 -3.10 9.10 -39.65 -0.36 -3.46 16 8 C -0.02 -0.35 9.65 -39.27 -0.38 -0.73 16 9 C -0.14 -3.16 4.09 -104.82 -0.43 -3.59 16 10 C 0.53 13.67 6.55 -12.52 -0.08 13.59 16 11 O -0.56 -16.07 16.36 5.25 0.09 -15.99 16 12 N -0.43 -10.85 2.70 -136.90 -0.37 -11.22 16 13 C -0.31 -8.29 8.83 -14.99 -0.13 -8.42 16 14 H 0.10 2.65 7.74 -52.49 -0.41 2.25 16 15 C 0.04 1.03 5.24 -17.45 -0.09 0.94 16 16 N -0.88 -21.89 11.42 55.50 0.63 -21.25 16 17 Si 0.93 19.83 29.55 -169.99 -5.02 14.80 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 C 0.13 2.66 4.27 -5.19 -0.02 2.64 16 22 C 0.45 8.71 4.64 36.00 0.17 8.88 16 23 O -0.51 -11.16 13.35 -18.75 -0.25 -11.41 16 24 O -0.52 -7.84 13.26 -39.28 -0.52 -8.37 16 25 C 0.07 1.42 6.99 -17.10 -0.12 1.30 16 26 N -0.51 -9.19 8.64 -12.12 -0.10 -9.30 16 27 C 0.06 0.65 5.24 -3.84 -0.02 0.63 16 28 C -0.11 -0.94 5.38 -26.65 -0.14 -1.09 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.20 7.69 -51.93 -0.40 0.80 16 36 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 37 H 0.13 1.75 7.12 -52.49 -0.37 1.38 16 38 H 0.14 2.63 7.75 -52.49 -0.41 2.22 16 39 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 40 H 0.11 2.25 6.18 -51.93 -0.32 1.93 16 41 H 0.13 2.84 6.89 -51.92 -0.36 2.48 16 42 H 0.40 4.53 9.10 45.56 0.41 4.95 16 43 H 0.20 3.95 2.11 -91.85 -0.19 3.75 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.87 6.64 -51.93 -0.34 0.52 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -31.39 370.57 -9.20 -40.59 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.75 Total: 11.17 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -2.68 Total: 12.53 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.65 Total: -48.92 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.69 Total: -35.76 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.39 -9.20 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736798693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.311 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds