Wall clock time and date at job start Wed Apr 1 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53117 * 109.52731 * 2 1 4 4 C 1.53036 * 109.28161 * 177.62690 * 3 2 1 5 5 N 1.46846 * 109.52042 * 300.81885 * 4 3 2 6 6 C 1.38472 * 110.99850 * 185.84373 * 5 4 3 7 7 C 1.39414 * 119.52985 * 180.02562 * 6 5 4 8 8 C 1.36840 * 119.38325 * 179.97438 * 7 6 5 9 9 C 1.40411 * 118.49149 * 359.97438 * 8 7 6 10 10 C 1.47434 * 120.48538 * 179.97438 * 9 8 7 11 11 O 1.21633 * 119.99808 * 351.32539 * 10 9 8 12 12 N 1.34772 * 120.00144 * 171.31770 * 10 9 8 13 13 C 1.36908 * 119.99990 * 174.46231 * 12 10 9 14 14 H 1.07998 * 120.00282 * 42.89617 * 13 12 10 15 15 C 1.39024 * 119.99938 * 223.16902 * 13 12 10 16 16 N 1.31386 * 119.99810 * 358.53974 * 15 13 12 17 17 Si 1.86795 * 119.99866 * 178.53546 * 15 13 12 18 18 H 1.48499 * 109.47326 * 60.00339 * 17 15 13 19 19 H 1.48503 * 109.47233 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47556 * 300.00119 * 17 15 13 21 21 C 1.46504 * 119.99770 * 354.46607 * 12 10 9 22 22 C 1.50697 * 109.47029 * 311.71268 * 21 12 10 23 23 O 1.20821 * 120.00306 * 0.02562 * 22 21 12 24 24 O 1.34237 * 119.99620 * 179.97438 * 22 21 12 25 25 C 1.39629 * 119.03172 * 0.24869 * 9 8 7 26 26 N 1.31672 * 120.51182 * 359.50591 * 25 9 8 27 27 C 1.46843 * 111.19904 * 61.74134 * 5 4 3 28 28 C 1.53032 * 109.52528 * 298.25775 * 27 5 4 29 29 H 1.08994 * 109.47569 * 59.99881 * 1 2 3 30 30 H 1.09004 * 109.47593 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47055 * 299.99812 * 1 2 3 32 32 H 1.09005 * 109.52335 * 239.87326 * 2 1 3 33 33 H 1.09001 * 109.49998 * 57.67975 * 3 2 1 34 34 H 1.09005 * 109.49854 * 297.57050 * 3 2 1 35 35 H 1.08998 * 109.45732 * 180.80695 * 4 3 2 36 36 H 1.08997 * 109.46384 * 60.83776 * 4 3 2 37 37 H 1.07992 * 120.31025 * 0.02562 * 7 6 5 38 38 H 1.07998 * 120.75569 * 180.02562 * 8 7 6 39 39 H 0.97002 * 119.99404 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47315 * 71.72097 * 21 12 10 41 41 H 1.09007 * 109.46425 * 191.71635 * 21 12 10 42 42 H 0.96703 * 116.99508 * 180.02562 * 24 22 21 43 43 H 1.08004 * 119.74095 * 179.74616 * 25 9 8 44 44 H 1.09000 * 109.45879 * 58.27401 * 27 5 4 45 45 H 1.09003 * 109.46320 * 178.23547 * 27 5 4 46 46 H 1.08998 * 109.50558 * 299.23381 * 28 27 5 47 47 H 1.09003 * 109.50192 * 179.12013 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4370 0.0598 5 7 4.0116 0.7424 1.2763 6 6 5.3850 0.8318 1.4288 7 6 5.9947 0.2312 2.5293 8 6 7.3521 0.3209 2.6768 9 6 8.0866 1.0202 1.7057 10 6 9.5511 1.1446 1.8214 11 8 10.1141 0.7801 2.8361 12 7 10.2661 1.6621 0.8029 13 6 11.6090 1.8830 0.9519 14 1 12.2273 1.1428 1.4378 15 6 12.1756 3.0627 0.4829 16 7 11.4277 3.9529 -0.1289 17 14 14.0004 3.3821 0.7228 18 1 14.7826 2.3154 0.0479 19 1 14.3532 4.7006 0.1377 20 1 14.3161 3.3846 2.1739 21 6 9.6062 1.9883 -0.4638 22 6 8.7554 0.8240 -0.9015 23 8 8.7051 -0.1756 -0.2246 24 8 8.0528 0.8978 -2.0428 25 6 7.4091 1.6010 0.6318 26 7 6.1017 1.4866 0.5255 27 6 3.5721 -0.6587 1.2765 28 6 2.0430 -0.7151 1.2530 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8942 -0.5157 -0.8886 33 1 1.6456 1.9696 0.8683 34 1 1.7151 1.9450 -0.9109 35 1 3.9378 2.4632 0.0744 36 1 3.9666 0.9224 -0.8158 37 1 5.4013 -0.3008 3.2581 38 1 7.8474 -0.1364 3.5205 39 1 11.8231 4.7761 -0.4558 40 1 8.9768 2.8681 -0.3296 41 1 10.3601 2.1935 -1.2239 42 1 7.5214 0.1260 -2.2819 43 1 7.9622 2.1451 -0.1196 44 1 3.9678 -1.1635 0.3952 45 1 3.9401 -1.1546 2.1747 46 1 1.6469 -0.2226 2.1410 47 1 1.7174 -1.7553 1.2374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736798693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:36 Heat of formation + Delta-G solvation = -34.903997 kcal Electronic energy + Delta-G solvation = -32002.534859 eV Core-core repulsion = 27766.341434 eV Total energy + Delta-G solvation = -4236.193425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.05423 -41.36170 -40.08680 -39.19034 -37.28920 -36.73276 -35.75593 -34.04530 -33.62696 -31.84153 -31.65491 -30.02148 -28.73892 -26.94604 -25.25824 -24.62088 -23.48660 -23.21605 -22.69952 -21.29815 -20.61706 -19.40875 -19.07340 -18.88997 -18.63536 -17.78461 -17.38007 -16.96498 -16.70932 -15.99935 -15.96695 -15.64184 -15.51033 -15.43843 -15.08569 -14.98755 -14.77508 -14.41238 -14.21750 -14.00955 -13.94911 -13.73370 -13.46620 -13.30581 -13.11636 -12.86264 -12.78285 -12.64233 -12.60228 -12.46470 -12.17493 -12.11102 -11.72669 -11.62502 -11.28882 -11.24532 -11.01600 -10.91809 -10.84231 -10.64747 -10.38190 -9.70783 -9.02089 -8.48304 -6.27048 -0.31929 0.20634 1.19415 1.42794 1.44877 1.53086 1.74106 2.05757 2.28788 2.47152 2.78676 2.84694 3.10592 3.28861 3.65832 3.79272 3.82011 3.86471 3.90179 4.01155 4.09544 4.14432 4.26850 4.33576 4.39405 4.45880 4.51009 4.58647 4.66041 4.72559 4.76804 4.83912 4.88648 4.92286 5.04434 5.10318 5.13192 5.19197 5.27525 5.32899 5.37523 5.42726 5.51365 5.56581 5.75508 6.08797 6.11211 6.34381 6.81375 6.87709 7.02534 7.15968 7.80562 8.60952 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023178 B = 0.002893 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.745413 B = 9676.006554 C =10170.417537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C -0.108 4.108 4 C 0.067 3.933 5 N -0.471 5.471 6 C 0.306 3.694 7 C -0.179 4.179 8 C -0.026 4.026 9 C -0.177 4.177 10 C 0.516 3.484 11 O -0.613 6.613 12 N -0.440 5.440 13 C -0.350 4.350 14 H 0.070 0.930 15 C 0.014 3.986 16 N -0.891 5.891 17 Si 0.993 3.007 18 H -0.264 1.264 19 H -0.264 1.264 20 H -0.280 1.280 21 C 0.130 3.870 22 C 0.470 3.530 23 O -0.536 6.536 24 O -0.498 6.498 25 C 0.077 3.923 26 N -0.514 5.514 27 C 0.055 3.945 28 C -0.105 4.105 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.167 0.833 38 H 0.138 0.862 39 H 0.283 0.717 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.422 0.578 43 H 0.202 0.798 44 H 0.038 0.962 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.610 -5.082 -4.947 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.146 4.146 4 C -0.059 4.059 5 N -0.188 5.188 6 C 0.074 3.926 7 C -0.201 4.201 8 C -0.052 4.052 9 C -0.183 4.183 10 C 0.308 3.692 11 O -0.499 6.499 12 N -0.159 5.159 13 C -0.477 4.477 14 H 0.087 0.913 15 C -0.191 4.191 16 N -0.527 5.527 17 Si 0.816 3.184 18 H -0.188 1.188 19 H -0.189 1.189 20 H -0.205 1.205 21 C 0.005 3.995 22 C 0.314 3.686 23 O -0.426 6.426 24 O -0.311 6.311 25 C -0.079 4.079 26 N -0.230 5.230 27 C -0.070 4.070 28 C -0.143 4.143 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.185 0.815 38 H 0.155 0.845 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.282 0.718 43 H 0.217 0.783 44 H 0.057 0.943 45 H 0.109 0.891 46 H 0.094 0.906 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.802 -4.407 -4.632 21.762 hybrid contribution 1.769 -0.882 0.230 1.990 sum -19.033 -5.289 -4.402 20.239 Atomic orbital electron populations 1.21754 0.93620 1.02274 1.02154 1.21221 0.96774 0.95381 0.98026 1.21716 0.92375 0.97489 1.03029 1.21990 0.96434 0.98922 0.88583 1.59022 1.05106 1.16200 1.38511 1.20275 0.89906 0.91982 0.90446 1.21385 0.93974 1.04838 0.99908 1.21283 0.93993 0.93208 0.96764 1.20860 0.94100 1.04145 0.99220 1.18478 0.86776 0.81025 0.82927 1.90545 1.73043 1.54449 1.31864 1.43067 1.08158 1.56547 1.08113 1.19410 0.82781 1.03468 1.42056 0.91255 1.26293 1.04735 0.93461 0.94566 1.69782 1.38026 1.09192 1.35686 0.85008 0.76597 0.78303 0.78519 1.18826 1.18859 1.20526 1.21518 0.97083 0.91116 0.89777 1.23716 0.77436 0.89275 0.78176 1.90794 1.62962 1.34461 1.54395 1.84518 1.58138 1.48839 1.39568 1.24914 0.90835 0.95482 0.96688 1.67782 1.06711 1.20565 1.27919 1.22424 0.97995 0.84472 1.02135 1.21682 0.91701 1.01992 0.98918 0.92255 0.91934 0.92456 0.91486 0.91214 0.89929 0.91180 0.94037 0.81527 0.84462 0.90658 0.86703 0.85723 0.71753 0.78290 0.94314 0.89123 0.90616 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.20 71.98 0.66 -0.74 16 2 C -0.10 -1.25 2.79 -10.72 -0.03 -1.28 16 3 C -0.11 -1.72 5.38 30.65 0.16 -1.55 16 4 C 0.07 1.51 4.64 86.33 0.40 1.92 16 5 N -0.47 -11.48 4.66 -702.09 -3.27 -14.75 16 6 C 0.31 9.60 6.40 133.25 0.85 10.46 16 7 C -0.18 -5.60 9.10 22.23 0.20 -5.40 16 8 C -0.03 -1.02 9.65 22.47 0.22 -0.80 16 9 C -0.18 -7.98 4.09 -19.99 -0.08 -8.06 16 10 C 0.52 28.06 6.55 86.67 0.57 28.63 16 11 O -0.61 -37.25 16.36 -4.14 -0.07 -37.32 16 12 N -0.44 -23.32 2.70 -705.29 -1.90 -25.23 16 13 C -0.35 -19.67 8.83 84.09 0.74 -18.92 16 14 H 0.07 4.15 7.74 -2.91 -0.02 4.13 16 15 C 0.01 0.70 5.24 84.95 0.44 1.14 16 16 N -0.89 -44.45 11.42 21.68 0.25 -44.20 16 17 Si 0.99 41.08 29.55 68.60 2.03 43.10 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.13 5.68 4.27 85.63 0.37 6.04 16 22 C 0.47 18.14 4.64 71.23 0.33 18.47 16 23 O -0.54 -23.84 13.35 21.98 0.29 -23.54 16 24 O -0.50 -14.42 13.26 -51.48 -0.68 -15.10 16 25 C 0.08 3.08 6.99 85.05 0.59 3.68 16 26 N -0.51 -17.99 8.64 -192.24 -1.66 -19.65 16 27 C 0.05 1.03 5.24 86.32 0.45 1.49 16 28 C -0.11 -1.41 5.38 30.65 0.16 -1.24 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.07 1.82 7.69 -2.39 -0.02 1.81 16 36 H 0.04 0.99 8.11 -2.39 -0.02 0.97 16 37 H 0.17 3.95 7.12 -2.91 -0.02 3.93 16 38 H 0.14 5.35 7.75 -2.91 -0.02 5.33 16 39 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 40 H 0.12 4.85 6.18 -2.39 -0.01 4.84 16 41 H 0.12 5.54 6.89 -2.38 -0.02 5.53 16 42 H 0.42 8.62 9.10 -74.06 -0.67 7.95 16 43 H 0.20 7.89 2.11 -39.89 -0.08 7.81 16 44 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 1.58 6.64 -2.39 -0.02 1.57 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -71.09 370.57 1.30 -69.80 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.27 Total: 33.07 kcal Atomic # 6 Polarization: 27.78 SS G_CDS: 6.05 Total: 33.83 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -6.59 Total: -103.84 kcal Atomic # 8 Polarization: -75.51 SS G_CDS: -0.46 Total: -75.97 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -71.09 1.30 -69.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736798693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.893 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds