Wall clock time and date at job start Wed Apr 1 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39744 * 119.91391 * 2 1 4 4 C 1.36130 * 119.16949 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.42316 * 179.97438 * 4 3 2 6 6 N 1.34988 * 119.15670 * 359.69451 * 4 3 2 7 7 C 1.36733 * 120.40403 * 0.60337 * 6 4 3 8 8 N 1.33400 * 107.86239 * 179.63126 * 7 6 4 9 9 C 1.33178 * 109.87193 * 359.72225 * 8 7 6 10 10 S 1.71200 * 125.55371 * 179.97438 * 9 8 7 11 11 N 1.34910 * 108.88965 * 0.02562 * 9 8 7 12 12 C 1.46497 * 126.67040 * 179.97438 * 11 9 8 13 13 N 1.46904 * 109.46879 * 96.85364 * 12 11 9 14 14 C 1.46848 * 110.99893 * 164.69535 * 13 12 11 15 15 C 1.53031 * 109.51582 * 185.83526 * 14 13 12 16 16 C 1.53121 * 109.27826 * 300.82242 * 15 14 13 17 17 C 1.50700 * 109.52472 * 177.62078 * 16 15 14 18 18 H 1.07996 * 119.99738 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00097 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99899 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99906 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47434 * 90.00049 * 21 19 17 23 23 H 1.48501 * 109.47175 * 210.00101 * 21 19 17 24 24 H 1.48507 * 109.47045 * 329.99917 * 21 19 17 25 25 C 1.53120 * 109.15527 * 57.65681 * 16 15 14 26 26 C 1.46824 * 110.98520 * 288.91079 * 13 12 11 27 27 N 1.31713 * 119.91389 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47525 * 269.97991 * 1 2 3 29 29 H 1.09000 * 109.46991 * 29.98669 * 1 2 3 30 30 H 1.09005 * 109.47066 * 149.98326 * 1 2 3 31 31 H 1.08002 * 120.41477 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47684 * 95.74299 * 5 4 3 33 33 H 1.09000 * 109.47420 * 215.74538 * 5 4 3 34 34 H 1.09007 * 109.46726 * 335.74143 * 5 4 3 35 35 H 1.09004 * 109.47586 * 336.85254 * 12 11 9 36 36 H 1.09001 * 109.47407 * 216.85205 * 12 11 9 37 37 H 1.09009 * 109.46111 * 65.81871 * 14 13 12 38 38 H 1.09004 * 109.46687 * 305.84746 * 14 13 12 39 39 H 1.08991 * 109.50674 * 60.76413 * 15 14 13 40 40 H 1.09002 * 109.50358 * 180.84782 * 15 14 13 41 41 H 1.08996 * 109.52708 * 297.75162 * 16 15 14 42 42 H 0.96996 * 119.99685 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.50988 * 62.28669 * 25 16 15 44 44 H 1.09001 * 109.50412 * 182.40100 * 25 16 15 45 45 H 1.08993 * 109.46942 * 54.13930 * 26 13 12 46 46 H 1.08999 * 109.45617 * 294.16622 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2039 1.2113 0.0000 4 6 3.5650 1.1936 -0.0005 5 6 4.3450 2.4831 -0.0011 6 7 4.2073 0.0063 0.0052 7 6 3.4994 -1.1635 -0.0009 8 7 4.3738 -2.1709 -0.0013 9 6 5.6164 -1.6918 -0.0017 10 16 7.0463 -2.6333 -0.0016 11 7 5.5648 -0.3437 -0.0010 12 6 6.7054 0.5755 -0.0006 13 7 6.9829 1.0121 -1.3756 14 6 7.8606 2.1894 -1.3869 15 6 8.0097 2.7021 -2.8210 16 6 8.6008 1.5929 -3.6956 17 6 8.6958 2.0722 -5.1212 18 1 8.3680 3.0684 -5.3788 19 6 9.2012 1.2389 -6.0965 20 7 9.2845 1.6574 -7.3405 21 14 9.7676 -0.4845 -5.6509 22 1 8.6296 -1.4293 -5.7832 23 1 10.8627 -0.8975 -6.5649 24 1 10.2608 -0.4967 -4.2502 25 6 7.6928 0.3619 -3.6277 26 6 7.5528 -0.0831 -2.1702 27 7 2.1638 -1.1417 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6692 2.1497 -0.0004 32 1 4.6215 2.7410 1.0212 33 1 5.2465 2.3622 -0.6018 34 1 3.7311 3.2787 -0.4233 35 1 7.5814 0.0676 0.4030 36 1 6.4724 1.4435 0.6161 37 1 8.8404 1.9157 -0.9952 38 1 7.4265 2.9721 -0.7647 39 1 7.0322 2.9889 -3.2085 40 1 8.6732 3.5668 -2.8312 41 1 9.5948 1.3329 -3.3318 42 1 9.6397 1.0710 -8.0266 43 1 6.7102 0.6118 -4.0278 44 1 8.1304 -0.4459 -4.2143 45 1 6.8955 -0.9509 -2.1168 46 1 8.5340 -0.3460 -1.7749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781572982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:48 Heat of formation + Delta-G solvation = 171.697039 kcal Electronic energy + Delta-G solvation = -29286.715759 eV Core-core repulsion = 25534.526849 eV Total energy + Delta-G solvation = -3752.188910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.77527 -39.92942 -38.80292 -36.41862 -34.92636 -33.23212 -32.66131 -31.62146 -30.48732 -30.27670 -28.59795 -27.17383 -25.20157 -24.48958 -23.59977 -22.79028 -22.22522 -21.42864 -19.28395 -19.03821 -18.93131 -17.78587 -17.00106 -16.75901 -16.71619 -16.08252 -15.48142 -14.97016 -14.90405 -14.69253 -14.38758 -14.33621 -13.98665 -13.74372 -13.45931 -13.14788 -13.06942 -12.88672 -12.68154 -12.45613 -12.36454 -12.23964 -11.90829 -11.76264 -11.45848 -11.29785 -10.94773 -10.72883 -10.57848 -10.53791 -10.18568 -10.01381 -9.78531 -9.66978 -9.19400 -9.04288 -8.59197 -8.53871 -7.58137 -7.43293 -6.10145 -4.09880 -0.37424 -0.15169 0.06381 1.65766 2.04372 2.57413 2.75567 2.82992 3.29281 3.31446 3.41415 3.43803 3.48241 3.75998 3.91611 4.19041 4.32264 4.40878 4.53408 4.57494 4.61240 4.72035 4.84932 4.91680 5.01320 5.05994 5.13146 5.21366 5.34318 5.36073 5.40417 5.54790 5.62042 5.78108 5.79561 5.98250 6.05734 6.24649 6.30386 6.50828 6.54014 6.72641 6.77224 6.98506 7.00801 7.17514 7.22554 7.48975 7.73364 8.47492 8.92447 9.53029 11.02857 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003632 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.977251 B = 7706.628619 C = 8418.731286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.258 3.742 3 C -0.234 4.234 4 C 0.222 3.778 5 C -0.151 4.151 6 N -0.311 5.311 7 C 0.530 3.470 8 N -0.502 5.502 9 C 0.485 3.515 10 S -0.535 6.535 11 N -0.368 5.368 12 C 0.277 3.723 13 N -0.553 5.553 14 C 0.059 3.941 15 C -0.093 4.093 16 C 0.013 3.987 17 C -0.514 4.514 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.901 5.901 21 Si 0.883 3.117 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.265 1.265 25 C -0.114 4.114 26 C 0.054 3.946 27 N -0.466 5.466 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.181 0.819 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.058 7.120 20.157 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 C -0.262 4.262 4 C 0.101 3.899 5 C -0.208 4.208 6 N -0.088 5.088 7 C 0.170 3.830 8 N -0.238 5.238 9 C 0.125 3.875 10 S -0.401 6.401 11 N -0.172 5.172 12 C 0.065 3.935 13 N -0.280 5.280 14 C -0.068 4.068 15 C -0.131 4.131 16 C -0.005 4.005 17 C -0.552 4.552 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.713 3.287 22 H -0.205 1.205 23 H -0.224 1.224 24 H -0.189 1.189 25 C -0.152 4.152 26 C -0.073 4.073 27 N -0.185 5.185 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.199 0.801 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.526 5.044 19.759 27.551 hybrid contribution 0.803 0.641 0.276 1.064 sum -17.723 5.686 20.035 27.346 Atomic orbital electron populations 1.20991 0.85471 1.05632 1.04924 1.22272 0.98559 0.86715 0.82676 1.21665 0.90389 1.01806 1.12294 1.21121 0.92644 0.86414 0.89768 1.21603 1.02851 0.91057 1.05273 1.46558 1.01208 1.09199 1.51872 1.23009 0.89390 0.80157 0.90454 1.72432 0.96457 1.23100 1.31809 1.24652 0.97673 0.80335 0.84795 1.93139 1.16427 1.59723 1.70762 1.50199 0.91952 1.07714 1.67293 1.22661 0.84905 0.92155 0.93745 1.61925 1.48786 1.08714 1.08533 1.22244 0.93994 0.90003 1.00553 1.21494 1.01378 0.99024 0.91197 1.19194 0.93894 0.91075 0.96382 1.20979 1.42265 1.01783 0.90172 0.90907 1.25004 0.94936 0.98223 0.94862 1.69889 1.46186 1.36872 1.00935 0.86920 0.78194 0.85105 0.78495 1.20462 1.22376 1.18948 1.22031 1.01598 0.99615 0.91939 1.22425 0.98158 0.91456 0.95271 1.68223 1.00207 1.28342 1.21702 0.88102 0.88597 0.88638 0.80147 0.88273 0.86892 0.87133 0.86740 0.87672 0.93965 0.91532 0.91884 0.91652 0.95659 0.92629 0.91884 0.92873 0.91383 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.23 10.19 36.00 0.37 0.13 16 2 C 0.26 1.61 6.83 -82.08 -0.56 1.05 16 3 C -0.23 -1.04 9.37 -39.78 -0.37 -1.41 16 4 C 0.22 1.59 6.83 -81.96 -0.56 1.03 16 5 C -0.15 -0.67 8.73 36.01 0.31 -0.35 16 6 N -0.31 -3.65 3.84 -10.14 -0.04 -3.69 16 7 C 0.53 7.50 8.97 -322.61 -2.89 4.61 16 8 N -0.50 -9.01 11.29 -15.03 -0.17 -9.18 16 9 C 0.48 8.65 7.04 -88.21 -0.62 8.03 16 10 S -0.54 -11.03 28.99 -107.50 -3.12 -14.15 16 11 N -0.37 -5.16 3.59 -65.42 -0.23 -5.39 16 12 C 0.28 3.29 4.74 -63.31 -0.30 2.99 16 13 N -0.55 -7.89 3.80 -238.59 -0.91 -8.80 16 14 C 0.06 0.77 5.16 -3.84 -0.02 0.75 16 15 C -0.09 -1.61 5.32 -26.65 -0.14 -1.75 16 16 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 17 C -0.51 -14.07 9.15 -34.44 -0.31 -14.39 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 19 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 20 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 21 Si 0.88 22.73 24.36 -169.99 -4.14 18.59 16 22 H -0.28 -7.16 6.89 56.52 0.39 -6.77 16 23 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 24 H -0.26 -6.59 6.53 56.52 0.37 -6.22 16 25 C -0.11 -2.51 4.84 -26.65 -0.13 -2.64 16 26 C 0.05 1.01 5.03 -3.85 -0.02 0.99 16 27 N -0.47 -5.26 10.41 -9.96 -0.10 -5.36 16 28 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.10 -0.04 8.09 -51.93 -0.42 -0.46 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.18 -0.01 8.06 -52.49 -0.42 -0.43 16 32 H 0.10 0.24 8.10 -51.93 -0.42 -0.18 16 33 H 0.11 0.82 4.62 -51.93 -0.24 0.58 16 34 H 0.11 0.21 8.05 -51.93 -0.42 -0.20 16 35 H 0.12 1.48 7.38 -51.93 -0.38 1.09 16 36 H 0.11 0.82 6.13 -51.93 -0.32 0.50 16 37 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.07 0.61 7.60 -51.93 -0.39 0.22 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.59 7.19 -51.93 -0.37 0.22 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.05 1.29 3.38 -51.93 -0.18 1.12 16 45 H 0.07 1.39 5.82 -51.93 -0.30 1.09 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -38.99 367.87 -14.33 -53.32 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -6.43 Total: -5.20 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -5.51 Total: 1.16 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.68 Total: -59.25 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.14 Total: 18.59 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -3.12 Total: -14.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.99 -14.33 -53.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.013 kcal (2) G-P(sol) polarization free energy of solvation -38.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds