Wall clock time and date at job start Wed Apr 1 2020 05:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39744 * 119.91391 * 2 1 4 4 C 1.36130 * 119.16949 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.42316 * 179.97438 * 4 3 2 6 6 N 1.34988 * 119.15670 * 359.69451 * 4 3 2 7 7 C 1.36733 * 120.40403 * 0.60337 * 6 4 3 8 8 N 1.33400 * 107.86239 * 179.63126 * 7 6 4 9 9 C 1.33178 * 109.87193 * 359.72225 * 8 7 6 10 10 S 1.71200 * 125.55371 * 179.97438 * 9 8 7 11 11 N 1.34910 * 108.88965 * 0.02562 * 9 8 7 12 12 C 1.46497 * 126.67040 * 179.97438 * 11 9 8 13 13 N 1.46904 * 109.46879 * 96.85364 * 12 11 9 14 14 C 1.46848 * 110.99893 * 164.69535 * 13 12 11 15 15 C 1.53031 * 109.51582 * 185.83526 * 14 13 12 16 16 C 1.53121 * 109.27826 * 300.82242 * 15 14 13 17 17 C 1.50700 * 109.52472 * 177.62078 * 16 15 14 18 18 H 1.07996 * 119.99738 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00097 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99899 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99906 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47434 * 90.00049 * 21 19 17 23 23 H 1.48501 * 109.47175 * 210.00101 * 21 19 17 24 24 H 1.48507 * 109.47045 * 329.99917 * 21 19 17 25 25 C 1.53120 * 109.15527 * 57.65681 * 16 15 14 26 26 C 1.46824 * 110.98520 * 288.91079 * 13 12 11 27 27 N 1.31713 * 119.91389 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47525 * 269.97991 * 1 2 3 29 29 H 1.09000 * 109.46991 * 29.98669 * 1 2 3 30 30 H 1.09005 * 109.47066 * 149.98326 * 1 2 3 31 31 H 1.08002 * 120.41477 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47684 * 95.74299 * 5 4 3 33 33 H 1.09000 * 109.47420 * 215.74538 * 5 4 3 34 34 H 1.09007 * 109.46726 * 335.74143 * 5 4 3 35 35 H 1.09004 * 109.47586 * 336.85254 * 12 11 9 36 36 H 1.09001 * 109.47407 * 216.85205 * 12 11 9 37 37 H 1.09009 * 109.46111 * 65.81871 * 14 13 12 38 38 H 1.09004 * 109.46687 * 305.84746 * 14 13 12 39 39 H 1.08991 * 109.50674 * 60.76413 * 15 14 13 40 40 H 1.09002 * 109.50358 * 180.84782 * 15 14 13 41 41 H 1.08996 * 109.52708 * 297.75162 * 16 15 14 42 42 H 0.96996 * 119.99685 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.50988 * 62.28669 * 25 16 15 44 44 H 1.09001 * 109.50412 * 182.40100 * 25 16 15 45 45 H 1.08993 * 109.46942 * 54.13930 * 26 13 12 46 46 H 1.08999 * 109.45617 * 294.16622 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2039 1.2113 0.0000 4 6 3.5650 1.1936 -0.0005 5 6 4.3450 2.4831 -0.0011 6 7 4.2073 0.0063 0.0052 7 6 3.4994 -1.1635 -0.0009 8 7 4.3738 -2.1709 -0.0013 9 6 5.6164 -1.6918 -0.0017 10 16 7.0463 -2.6333 -0.0016 11 7 5.5648 -0.3437 -0.0010 12 6 6.7054 0.5755 -0.0006 13 7 6.9829 1.0121 -1.3756 14 6 7.8606 2.1894 -1.3869 15 6 8.0097 2.7021 -2.8210 16 6 8.6008 1.5929 -3.6956 17 6 8.6958 2.0722 -5.1212 18 1 8.3680 3.0684 -5.3788 19 6 9.2012 1.2389 -6.0965 20 7 9.2845 1.6574 -7.3405 21 14 9.7676 -0.4845 -5.6509 22 1 8.6296 -1.4293 -5.7832 23 1 10.8627 -0.8975 -6.5649 24 1 10.2608 -0.4967 -4.2502 25 6 7.6928 0.3619 -3.6277 26 6 7.5528 -0.0831 -2.1702 27 7 2.1638 -1.1417 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6692 2.1497 -0.0004 32 1 4.6215 2.7410 1.0212 33 1 5.2465 2.3622 -0.6018 34 1 3.7311 3.2787 -0.4233 35 1 7.5814 0.0676 0.4030 36 1 6.4724 1.4435 0.6161 37 1 8.8404 1.9157 -0.9952 38 1 7.4265 2.9721 -0.7647 39 1 7.0322 2.9889 -3.2085 40 1 8.6732 3.5668 -2.8312 41 1 9.5948 1.3329 -3.3318 42 1 9.6397 1.0710 -8.0266 43 1 6.7102 0.6118 -4.0278 44 1 8.1304 -0.4459 -4.2143 45 1 6.8955 -0.9509 -2.1168 46 1 8.5340 -0.3460 -1.7749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781572982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:47 Heat of formation + Delta-G solvation = 145.035121 kcal Electronic energy + Delta-G solvation = -29287.871906 eV Core-core repulsion = 25534.526849 eV Total energy + Delta-G solvation = -3753.345058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.72499 -40.80983 -40.05972 -37.30732 -36.21533 -34.64025 -33.56646 -33.22078 -31.88726 -31.04010 -29.00336 -28.57349 -26.50233 -25.60606 -24.55620 -24.11336 -23.39155 -22.66912 -20.64952 -20.06105 -19.76679 -18.90533 -18.77875 -17.99444 -17.85235 -17.33616 -16.39554 -16.34718 -15.70041 -15.47633 -15.43404 -15.22660 -14.98379 -14.81613 -14.72540 -14.21150 -14.10221 -14.00282 -13.68992 -13.48369 -13.24832 -13.13069 -13.07433 -12.90477 -12.85357 -12.77841 -12.37861 -12.26699 -12.15455 -11.80243 -11.51786 -11.34699 -11.29040 -11.06138 -10.96371 -10.70990 -10.51164 -9.81266 -9.02244 -8.89794 -8.37106 -6.37209 -1.17698 -0.87195 -0.85014 0.69711 0.80299 1.21473 1.28323 1.34711 1.70877 1.93357 1.97452 2.23034 2.47353 2.81026 2.89853 2.99672 3.15071 3.52159 3.75550 3.82467 3.89282 4.02738 4.05975 4.11446 4.18342 4.25223 4.34632 4.43688 4.46275 4.59552 4.61933 4.72362 4.74599 4.75381 4.81629 4.83890 4.84883 4.97889 5.04540 5.11663 5.12836 5.27990 5.48538 5.55904 5.67826 5.68938 5.83982 5.95316 6.27050 6.27473 6.71011 7.28606 8.79459 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003632 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.977251 B = 7706.628619 C = 8418.731286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.256 3.744 3 C -0.192 4.192 4 C 0.196 3.804 5 C -0.150 4.150 6 N -0.303 5.303 7 C 0.514 3.486 8 N -0.554 5.554 9 C 0.497 3.503 10 S -0.647 6.647 11 N -0.364 5.364 12 C 0.277 3.723 13 N -0.547 5.547 14 C 0.065 3.935 15 C -0.087 4.087 16 C 0.010 3.990 17 C -0.507 4.507 18 H 0.047 0.953 19 C 0.022 3.978 20 N -0.945 5.945 21 Si 0.933 3.067 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.255 1.255 25 C -0.108 4.108 26 C 0.073 3.927 27 N -0.496 5.496 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.244 0.756 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.162 0.838 37 H 0.045 0.955 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.017 0.983 42 H 0.264 0.736 43 H 0.051 0.949 44 H 0.024 0.976 45 H 0.047 0.953 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.807 11.498 23.123 34.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 C -0.217 4.217 4 C 0.078 3.922 5 C -0.206 4.206 6 N -0.081 5.081 7 C 0.155 3.845 8 N -0.292 5.292 9 C 0.131 3.869 10 S -0.516 6.516 11 N -0.164 5.164 12 C 0.068 3.932 13 N -0.273 5.273 14 C -0.061 4.061 15 C -0.125 4.125 16 C -0.009 4.009 17 C -0.545 4.545 18 H 0.065 0.935 19 C -0.176 4.176 20 N -0.586 5.586 21 Si 0.762 3.238 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.179 1.179 25 C -0.146 4.146 26 C -0.055 4.055 27 N -0.217 5.217 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.102 0.898 31 H 0.260 0.740 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.165 0.835 35 H 0.121 0.879 36 H 0.179 0.821 37 H 0.064 0.936 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.065 0.935 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -22.402 9.564 22.752 33.332 hybrid contribution 1.463 -0.381 -0.640 1.642 sum -20.939 9.183 22.112 31.808 Atomic orbital electron populations 1.21276 0.82047 1.06977 1.06616 1.23260 1.00532 0.86162 0.80046 1.22505 0.89110 1.03287 1.06759 1.22181 0.93902 0.85902 0.90238 1.21810 1.02063 0.89891 1.06866 1.46683 0.99473 1.10384 1.51526 1.22955 0.90236 0.80274 0.91053 1.72158 0.97300 1.25931 1.33788 1.23824 0.96481 0.81455 0.85137 1.93149 1.19083 1.62699 1.76674 1.49898 0.93787 1.06815 1.65924 1.22969 0.84212 0.93434 0.92594 1.61850 1.48346 1.07465 1.09661 1.22277 0.94790 0.90615 0.98427 1.21370 1.00887 0.97294 0.92913 1.19194 0.94063 0.93112 0.94482 1.21396 1.40012 1.00383 0.92696 0.93506 1.25653 0.95768 1.01249 0.94911 1.69999 1.48402 1.38195 1.01964 0.86098 0.77477 0.81587 0.78630 1.21173 1.22354 1.17910 1.21848 1.00380 0.98406 0.93943 1.21993 0.97405 0.92345 0.93803 1.68339 0.98728 1.31285 1.23360 0.85805 0.84712 0.89813 0.73996 0.85344 0.89309 0.83520 0.87937 0.82077 0.93622 0.85509 0.92048 0.90771 0.96538 0.92656 0.93056 0.95791 0.93457 0.94768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.15 10.19 71.23 0.73 0.88 16 2 C 0.26 1.98 6.83 42.94 0.29 2.28 16 3 C -0.19 -0.35 9.37 22.14 0.21 -0.14 16 4 C 0.20 1.71 6.83 41.58 0.28 1.99 16 5 C -0.15 -0.21 8.73 71.24 0.62 0.41 16 6 N -0.30 -6.35 3.84 -186.01 -0.71 -7.06 16 7 C 0.51 14.21 8.97 261.42 2.34 16.55 16 8 N -0.55 -20.86 11.29 -201.46 -2.27 -23.13 16 9 C 0.50 18.60 7.04 179.51 1.26 19.87 16 10 S -0.65 -29.04 28.99 -56.49 -1.64 -30.68 16 11 N -0.36 -9.82 3.59 -360.90 -1.29 -11.12 16 12 C 0.28 5.89 4.74 170.81 0.81 6.70 16 13 N -0.55 -14.32 3.80 -908.77 -3.45 -17.77 16 14 C 0.06 1.43 5.16 86.32 0.45 1.88 16 15 C -0.09 -2.78 5.32 30.65 0.16 -2.62 16 16 C 0.01 0.47 1.75 -11.46 -0.02 0.45 16 17 C -0.51 -28.27 9.15 25.60 0.23 -28.04 16 18 H 0.05 2.80 7.99 -2.91 -0.02 2.78 16 19 C 0.02 1.29 5.45 84.66 0.46 1.75 16 20 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 21 Si 0.93 48.83 24.36 68.60 1.67 50.50 16 22 H -0.28 -15.06 6.89 99.48 0.69 -14.37 16 23 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 24 H -0.25 -12.76 6.53 99.48 0.65 -12.11 16 25 C -0.11 -4.83 4.84 30.65 0.15 -4.68 16 26 C 0.07 2.76 5.03 86.33 0.43 3.20 16 27 N -0.50 -10.30 10.41 -185.42 -1.93 -12.23 16 28 H 0.12 -0.59 8.14 -2.39 -0.02 -0.61 16 29 H 0.13 -1.13 8.09 -2.39 -0.02 -1.15 16 30 H 0.08 0.19 8.14 -2.38 -0.02 0.18 16 31 H 0.24 -2.52 8.06 -2.91 -0.02 -2.54 16 32 H 0.13 -0.48 8.10 -2.39 -0.02 -0.50 16 33 H 0.09 0.69 4.62 -2.39 -0.01 0.68 16 34 H 0.15 -0.76 8.05 -2.38 -0.02 -0.78 16 35 H 0.10 2.55 7.38 -2.39 -0.02 2.54 16 36 H 0.16 1.59 6.13 -2.39 -0.01 1.57 16 37 H 0.05 1.03 8.14 -2.38 -0.02 1.02 16 38 H 0.13 1.41 7.60 -2.39 -0.02 1.39 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.02 0.77 7.19 -2.39 -0.02 0.76 16 42 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 43 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.02 1.20 3.38 -2.39 -0.01 1.19 16 45 H 0.05 2.03 5.82 -2.39 -0.01 2.02 16 46 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -100.02 367.87 0.02 -100.00 By element: Atomic # 1 Polarization: -10.47 SS G_CDS: 0.93 Total: -9.54 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 8.42 Total: 20.46 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -9.36 Total: -130.75 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 1.67 Total: 50.50 kcal Atomic # 16 Polarization: -29.04 SS G_CDS: -1.64 Total: -30.68 kcal Total: -100.02 0.02 -100.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781572982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.036 kcal (2) G-P(sol) polarization free energy of solvation -100.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds