Wall clock time and date at job start Wed Apr 1 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40621 * 119.74639 * 2 1 4 4 C 1.35187 * 119.59570 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.41040 * 179.97438 * 4 3 2 6 6 N 1.37231 * 119.18014 * 0.02562 * 4 3 2 7 7 C 1.38220 * 119.67798 * 359.97438 * 6 4 3 8 8 N 1.31278 * 108.28278 * 179.97438 * 7 6 4 9 9 N 1.40130 * 107.98163 * 0.02562 * 8 7 6 10 10 C 1.46496 * 126.22607 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.47193 * 90.02076 * 10 9 8 12 12 C 1.46852 * 110.99955 * 45.79115 * 11 10 9 13 13 C 1.53037 * 109.52246 * 185.83880 * 12 11 10 14 14 C 1.53116 * 109.27900 * 300.81799 * 13 12 11 15 15 C 1.53128 * 109.16072 * 57.65775 * 14 13 12 16 16 H 1.08997 * 109.50266 * 62.28788 * 15 14 13 17 17 C 1.50697 * 109.50098 * 182.40471 * 15 14 13 18 18 H 1.08003 * 119.99911 * 119.80418 * 17 15 14 19 19 C 1.37883 * 120.00273 * 299.79924 * 17 15 14 20 20 N 1.31507 * 120.00040 * 180.02562 * 19 17 15 21 21 Si 1.86800 * 119.99613 * 0.02562 * 19 17 15 22 22 H 1.48498 * 109.47181 * 89.99990 * 21 19 17 23 23 H 1.48503 * 109.46945 * 210.00257 * 21 19 17 24 24 H 1.48500 * 109.47434 * 329.99978 * 21 19 17 25 25 C 1.46849 * 110.99978 * 169.99850 * 11 10 9 26 26 C 1.34727 * 131.91213 * 179.97438 * 6 4 3 27 27 S 1.71196 * 126.11099 * 359.97438 * 26 6 4 28 28 N 1.30919 * 119.74830 * 179.72129 * 2 1 3 29 29 H 1.09001 * 109.46953 * 90.00029 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99627 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00257 * 1 2 3 32 32 H 1.07998 * 120.19855 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47257 * 89.99946 * 5 4 3 34 34 H 1.09001 * 109.47539 * 209.99606 * 5 4 3 35 35 H 1.08997 * 109.47464 * 330.00382 * 5 4 3 36 36 H 1.09006 * 109.47190 * 210.02135 * 10 9 8 37 37 H 1.09004 * 109.47606 * 330.02090 * 10 9 8 38 38 H 1.08999 * 109.46251 * 305.85348 * 12 11 10 39 39 H 1.09002 * 109.45866 * 65.82436 * 12 11 10 40 40 H 1.08998 * 109.50495 * 180.88208 * 13 12 11 41 41 H 1.08997 * 109.53690 * 60.78013 * 13 12 11 42 42 H 1.09003 * 109.52778 * 297.74938 * 14 13 12 43 43 H 1.09004 * 109.57427 * 177.59237 * 14 13 12 44 44 H 0.97002 * 120.00266 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.46756 * 294.17449 * 25 11 10 46 46 H 1.08998 * 109.46095 * 54.15035 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2048 1.2209 0.0000 4 6 3.5566 1.2174 0.0005 5 6 4.3228 2.5150 0.0000 6 7 4.2226 0.0175 0.0005 7 6 3.5046 -1.1637 0.0005 8 7 4.3559 -2.1630 -0.0001 9 7 5.6511 -1.6281 0.0002 10 6 6.9024 -2.3898 -0.0008 11 7 7.3206 -2.6427 -1.3861 12 6 7.2116 -1.4248 -2.1994 13 6 7.5142 -1.7579 -3.6621 14 6 8.9270 -2.3389 -3.7665 15 6 9.0281 -3.5782 -2.8728 16 1 8.3300 -4.3380 -3.2241 17 6 10.4325 -4.1221 -2.9239 18 1 11.0199 -4.1865 -2.0198 19 6 10.9678 -4.5376 -4.1247 20 7 12.1932 -5.0127 -4.1692 21 14 9.9520 -4.4257 -5.6884 22 1 10.1751 -3.1052 -6.3301 23 1 10.3608 -5.5054 -6.6225 24 1 8.5128 -4.5776 -5.3558 25 6 8.6816 -3.1924 -1.4329 26 6 5.5359 -0.2829 0.0005 27 16 6.8278 0.8404 -0.0001 28 7 2.1567 -1.1366 0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6639 2.1557 0.0004 33 1 4.5072 2.8285 1.0275 34 1 5.2742 2.3750 -0.5133 35 1 3.7415 3.2800 -0.5145 36 1 7.6756 -1.8192 0.5137 37 1 6.7501 -3.3396 0.5118 38 1 6.2011 -1.0242 -2.1198 39 1 7.9255 -0.6834 -1.8405 40 1 7.4486 -0.8508 -4.2630 41 1 6.7924 -2.4888 -4.0264 42 1 9.6524 -1.5939 -3.4395 43 1 9.1319 -2.6175 -4.8002 44 1 12.5699 -5.3047 -5.0140 45 1 9.3886 -2.4427 -1.0778 46 1 8.7386 -4.0755 -0.7966 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853526809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:35 Heat of formation + Delta-G solvation = 139.033102 kcal Electronic energy + Delta-G solvation = -28745.316901 eV Core-core repulsion = 24991.711576 eV Total energy + Delta-G solvation = -3753.605325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.73990 -40.90630 -39.79648 -37.13095 -36.17229 -34.65460 -33.51033 -32.69307 -32.13649 -30.99353 -29.18311 -28.01301 -26.96312 -25.39894 -24.53127 -23.75368 -23.40528 -22.73328 -20.71204 -20.02720 -19.80232 -18.97004 -18.66856 -18.35928 -17.67956 -17.12084 -16.38303 -15.83559 -15.69634 -15.51295 -15.35520 -15.10876 -15.01769 -14.85756 -14.68022 -14.12292 -14.07723 -14.01906 -13.82944 -13.43450 -13.26437 -13.24518 -13.04840 -13.00637 -12.94635 -12.83005 -12.72632 -12.41299 -12.00396 -11.87026 -11.55871 -11.38617 -11.31910 -11.09535 -10.99027 -10.66922 -10.51310 -9.66107 -8.85990 -8.72060 -8.31447 -6.34566 -1.20279 -0.44647 -0.23852 0.21121 0.69928 0.92237 1.27951 1.34014 1.44458 1.94903 2.14604 2.30714 2.66915 2.74765 3.04086 3.05207 3.20887 3.72688 3.78624 3.85737 3.91725 3.98251 4.05111 4.15291 4.23361 4.34523 4.38731 4.45351 4.54510 4.61880 4.66236 4.69940 4.77233 4.79984 4.82298 4.84812 4.85822 4.99474 5.07320 5.15113 5.28487 5.31470 5.32644 5.52999 5.63017 5.64486 5.79703 5.92907 6.28625 6.30215 6.71737 7.30772 8.85041 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.002876 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.350451 B = 9735.023396 C =10103.426668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.272 3.728 3 C -0.205 4.205 4 C 0.179 3.821 5 C -0.143 4.143 6 N -0.459 5.459 7 C 0.432 3.568 8 N -0.289 5.289 9 N -0.338 5.338 10 C 0.309 3.691 11 N -0.555 5.555 12 C 0.071 3.929 13 C -0.110 4.110 14 C -0.119 4.119 15 C 0.024 3.976 16 H 0.026 0.974 17 C -0.515 4.515 18 H 0.042 0.958 19 C 0.018 3.982 20 N -0.946 5.946 21 Si 0.945 3.055 22 H -0.269 1.269 23 H -0.298 1.298 24 H -0.252 1.252 25 C 0.093 3.907 26 C 0.445 3.555 27 S -0.584 6.584 28 N -0.503 5.503 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.231 0.769 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.097 0.903 37 H 0.138 0.862 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.266 0.734 45 H 0.034 0.966 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.538 18.558 10.185 37.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 C -0.230 4.230 4 C 0.072 3.928 5 C -0.200 4.200 6 N -0.153 5.153 7 C 0.067 3.933 8 N -0.118 5.118 9 N -0.127 5.127 10 C 0.101 3.899 11 N -0.282 5.282 12 C -0.057 4.057 13 C -0.148 4.148 14 C -0.156 4.156 15 C 0.005 3.995 16 H 0.045 0.955 17 C -0.553 4.553 18 H 0.060 0.940 19 C -0.180 4.180 20 N -0.586 5.586 21 Si 0.773 3.227 22 H -0.195 1.195 23 H -0.225 1.225 24 H -0.177 1.177 25 C -0.034 4.034 26 C 0.084 3.916 27 S -0.454 6.454 28 N -0.224 5.224 29 H 0.136 0.864 30 H 0.106 0.894 31 H 0.151 0.849 32 H 0.248 0.752 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.156 0.844 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -29.802 16.644 9.922 35.548 hybrid contribution 0.852 0.667 -0.528 1.204 sum -28.950 17.311 9.394 35.015 Atomic orbital electron populations 1.21243 0.82213 1.06928 1.06306 1.23212 1.00195 0.86252 0.79827 1.22280 0.90083 1.02932 1.07679 1.21968 0.93694 0.85420 0.91764 1.21731 1.02534 0.89463 1.06278 1.44525 1.05850 1.10628 1.54304 1.23295 0.91475 0.81049 0.97452 1.78165 0.86633 1.16003 1.31031 1.49528 1.06242 1.02750 1.54191 1.22657 0.77986 0.96764 0.92534 1.62326 1.27383 1.30075 1.08389 1.22096 0.99392 0.90388 0.93810 1.21579 0.96938 1.00702 0.95592 1.21912 0.95898 0.98836 0.99000 1.19037 0.94626 0.93467 0.92369 0.95540 1.21231 0.98505 1.40858 0.94741 0.93998 1.25743 0.95629 0.94328 1.02256 1.70023 1.16472 1.44697 1.27457 0.85890 0.80350 0.77067 0.79412 1.19473 1.22543 1.17664 1.21839 0.84323 0.98526 0.98722 1.23512 0.88306 0.89317 0.90495 1.93377 1.32114 1.46182 1.73680 1.68478 0.98351 1.30887 1.24679 0.86428 0.89441 0.84909 0.75230 0.87661 0.88807 0.84891 0.88567 0.84418 0.93804 0.92774 0.90529 0.92475 0.92829 0.94375 0.92512 0.94771 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.07 10.18 71.24 0.73 0.79 16 2 C 0.27 2.49 6.83 43.28 0.30 2.79 16 3 C -0.21 -1.14 9.36 22.15 0.21 -0.94 16 4 C 0.18 2.54 6.81 41.01 0.28 2.81 16 5 C -0.14 -1.57 9.33 71.23 0.66 -0.91 16 6 N -0.46 -10.97 2.92 -346.70 -1.01 -11.98 16 7 C 0.43 11.39 8.97 261.05 2.34 13.73 16 8 N -0.29 -9.08 12.62 -59.20 -0.75 -9.82 16 9 N -0.34 -10.47 3.03 -359.56 -1.09 -11.56 16 10 C 0.31 9.49 6.29 170.81 1.07 10.56 16 11 N -0.55 -20.02 4.88 -908.69 -4.43 -24.46 16 12 C 0.07 2.58 4.13 86.32 0.36 2.93 16 13 C -0.11 -4.14 6.09 30.65 0.19 -3.96 16 14 C -0.12 -5.27 4.74 30.68 0.15 -5.13 16 15 C 0.02 1.16 1.85 -11.48 -0.02 1.14 16 16 H 0.03 1.32 7.20 -2.39 -0.02 1.31 16 17 C -0.51 -29.57 9.14 25.60 0.23 -29.34 16 18 H 0.04 2.61 7.99 -2.91 -0.02 2.59 16 19 C 0.02 1.06 5.45 84.66 0.46 1.52 16 20 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 21 Si 0.95 46.63 24.36 68.60 1.67 48.30 16 22 H -0.27 -12.69 6.89 99.48 0.69 -12.00 16 23 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 24 H -0.25 -11.87 6.53 99.48 0.65 -11.22 16 25 C 0.09 3.75 4.65 86.33 0.40 4.16 16 26 C 0.45 13.13 6.10 179.00 1.09 14.22 16 27 S -0.58 -18.85 24.76 -56.49 -1.40 -20.24 16 28 N -0.50 -10.20 10.41 -184.64 -1.92 -12.12 16 29 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.13 -1.03 8.09 -2.39 -0.02 -1.05 16 32 H 0.23 -1.36 8.06 -2.91 -0.02 -1.38 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.82 5.18 -9.86 -0.05 1.77 16 35 H 0.13 0.33 8.09 -2.39 -0.02 0.31 16 36 H 0.10 2.91 7.61 -2.38 -0.02 2.89 16 37 H 0.14 3.71 8.14 -2.38 -0.02 3.69 16 38 H 0.04 1.58 5.82 -2.39 -0.01 1.57 16 39 H 0.05 2.08 6.87 -2.39 -0.02 2.06 16 40 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.04 1.76 3.37 -2.38 -0.01 1.75 16 44 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 45 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 3.14 8.12 -2.39 -0.02 3.12 16 Total: -1.00 -81.91 367.20 0.70 -81.21 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.89 Total: 5.85 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 8.44 Total: 14.39 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -8.90 Total: -129.51 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.67 Total: 48.30 kcal Atomic # 16 Polarization: -18.85 SS G_CDS: -1.40 Total: -20.24 kcal Total: -81.91 0.70 -81.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.245 kcal (2) G-P(sol) polarization free energy of solvation -81.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds