Wall clock time and date at job start Wed Apr 1 2020 05:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 117.00095 * 2 1 4 4 O 1.20828 * 119.99888 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00058 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.49468 * 300.06678 * 5 3 2 7 7 C 1.53036 * 109.49504 * 180.02562 * 5 3 2 8 8 C 1.53041 * 109.53572 * 178.68251 * 7 5 3 9 9 C 1.53194 * 109.31290 * 61.36687 * 8 7 5 10 10 N 1.46927 * 108.77434 * 305.36447 * 9 8 7 11 11 C 1.34776 * 120.62965 * 233.58673 * 10 9 8 12 12 O 1.21579 * 119.99733 * 174.88630 * 11 10 9 13 13 N 1.34770 * 120.00136 * 354.88812 * 11 10 9 14 14 C 1.39459 * 120.00231 * 184.88513 * 13 11 10 15 15 C 1.38643 * 119.64705 * 18.23323 * 14 13 11 16 16 C 1.40814 * 118.67408 * 180.02562 * 15 14 13 17 17 C 1.41544 * 120.99712 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00378 * 334.54921 * 17 16 15 19 19 C 1.40037 * 120.00178 * 154.55157 * 17 16 15 20 20 N 1.30738 * 120.00159 * 165.63860 * 19 17 16 21 21 Si 1.86800 * 119.99681 * 345.63626 * 19 17 16 22 22 H 1.48508 * 109.46818 * 91.11873 * 21 19 17 23 23 H 1.48495 * 109.47172 * 211.11466 * 21 19 17 24 24 H 1.48500 * 109.47434 * 331.11761 * 21 19 17 25 25 C 1.41160 * 118.00725 * 359.97438 * 16 15 14 26 26 C 1.36590 * 119.12774 * 359.97438 * 25 16 15 27 27 N 1.32069 * 121.25771 * 359.73459 * 26 25 16 28 28 C 1.46929 * 118.73885 * 53.60774 * 10 9 8 29 29 H 1.08999 * 109.46651 * 300.00044 * 1 2 3 30 30 H 1.08993 * 109.46647 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47020 * 59.99978 * 1 2 3 32 32 H 1.08993 * 109.47523 * 60.00104 * 6 5 3 33 33 H 1.09005 * 109.46674 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.47202 * 299.99659 * 6 5 3 35 35 H 1.09000 * 109.46205 * 298.70365 * 7 5 3 36 36 H 1.09000 * 109.46176 * 58.66654 * 7 5 3 37 37 H 1.09001 * 109.49612 * 181.31940 * 8 7 5 38 38 H 1.08997 * 109.49896 * 301.37927 * 8 7 5 39 39 H 1.09000 * 109.58386 * 65.14838 * 9 8 7 40 40 H 1.08994 * 109.58628 * 185.57671 * 9 8 7 41 41 H 0.97003 * 119.99835 * 4.88677 * 13 11 10 42 42 H 1.07998 * 120.66259 * 0.02562 * 15 14 13 43 43 H 0.96998 * 120.00287 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.43855 * 179.97438 * 25 16 15 45 45 H 1.07998 * 119.37445 * 179.97438 * 26 25 16 46 46 H 1.09000 * 109.58465 * 186.60502 * 28 10 9 47 47 H 1.08999 * 109.58516 * 66.17436 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.1146 0.5797 1.2473 7 6 4.0010 2.7422 0.0002 8 6 5.5289 2.8235 0.0328 9 6 6.0988 2.1511 -1.2202 10 7 5.5690 0.7834 -1.3054 11 6 6.4017 -0.2691 -1.4290 12 8 5.9584 -1.4010 -1.4050 13 7 7.7256 -0.0670 -1.5790 14 6 8.5747 -1.1492 -1.8087 15 6 8.0479 -2.3515 -2.2551 16 6 8.9238 -3.4309 -2.4799 17 6 8.4389 -4.6804 -2.9351 18 1 7.4178 -4.9692 -2.7341 19 6 9.2832 -5.5422 -3.6461 20 7 8.9429 -6.7921 -3.8228 21 14 10.8957 -4.9059 -4.3421 22 1 11.9786 -5.1074 -3.3459 23 1 11.2241 -5.6462 -5.5867 24 1 10.7665 -3.4582 -4.6467 25 6 10.2998 -3.2296 -2.2378 26 6 10.7260 -2.0081 -1.7996 27 7 9.8769 -1.0155 -1.6046 28 6 4.1140 0.5849 -1.2539 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 3.8059 -0.4656 1.2462 33 1 5.2032 0.6374 1.2466 34 1 3.7256 1.0726 2.1382 35 1 3.6304 3.2312 -0.9008 36 1 3.5920 3.2416 0.8785 37 1 5.8371 3.8687 0.0569 38 1 5.9015 2.3137 0.9212 39 1 5.8008 2.7142 -2.1046 40 1 7.1863 2.1183 -1.1546 41 1 8.0880 0.8313 -1.5271 42 1 6.9870 -2.4580 -2.4270 43 1 9.5275 -7.3890 -4.3156 44 1 11.0063 -4.0308 -2.3969 45 1 11.7778 -1.8498 -1.6127 46 1 3.8921 -0.4814 -1.2106 47 1 3.6542 1.0203 -2.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871733404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:39 Heat of formation + Delta-G solvation = -62.260543 kcal Electronic energy + Delta-G solvation = -31093.552451 eV Core-core repulsion = 26856.172757 eV Total energy + Delta-G solvation = -4237.379694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.38982 -40.38809 -38.82432 -37.68354 -36.63851 -34.75718 -34.01160 -33.39827 -32.10348 -31.24480 -28.99795 -28.05729 -27.35411 -25.93354 -25.62807 -24.29505 -22.57136 -22.02168 -21.26525 -20.16325 -19.02103 -18.36716 -17.92247 -17.54606 -16.92363 -16.64932 -16.19497 -15.90190 -15.39378 -15.11316 -14.95072 -14.59398 -14.40918 -14.18542 -14.02249 -13.78281 -13.47835 -13.40394 -13.13518 -12.95913 -12.79386 -12.73661 -12.60756 -12.23017 -12.00560 -11.63169 -11.61833 -11.43211 -11.27703 -11.12686 -11.05294 -10.83922 -10.82847 -10.66727 -10.54858 -9.98955 -9.77709 -9.52986 -9.08891 -8.73897 -8.24718 -8.15230 -7.22836 -7.01921 -4.65574 1.86514 2.33021 2.43550 2.62956 2.67753 3.07453 3.20736 3.27342 3.45200 3.87178 3.92921 4.16231 4.34402 4.41827 4.58401 4.61680 4.71316 4.75376 4.85001 4.91626 5.06217 5.21777 5.25866 5.39094 5.41786 5.44214 5.45771 5.53335 5.59573 5.61316 5.71368 5.79672 5.83907 6.06690 6.10294 6.23597 6.26842 6.44571 6.53285 6.83181 6.84321 7.08798 7.24640 7.35324 7.44926 7.76353 7.94255 8.10456 8.30744 8.55253 8.70390 8.80745 9.33551 9.99267 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002706 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.274760 B =10344.639520 C =11629.564838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.476 3.524 4 O -0.506 6.506 5 C -0.066 4.066 6 C -0.139 4.139 7 C -0.098 4.098 8 C -0.136 4.136 9 C 0.106 3.894 10 N -0.626 5.626 11 C 0.710 3.290 12 O -0.551 6.551 13 N -0.663 5.663 14 C 0.359 3.641 15 C -0.263 4.263 16 C 0.119 3.881 17 C -0.425 4.425 18 H 0.095 0.905 19 C 0.082 3.918 20 N -0.799 5.799 21 Si 0.925 3.075 22 H -0.268 1.268 23 H -0.294 1.294 24 H -0.245 1.245 25 C -0.309 4.309 26 C 0.141 3.859 27 N -0.606 5.606 28 C 0.145 3.855 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.399 0.601 42 H 0.147 0.853 43 H 0.288 0.712 44 H 0.108 0.892 45 H 0.128 0.872 46 H 0.112 0.888 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 16.986 6.030 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.318 3.682 4 O -0.394 6.394 5 C -0.069 4.069 6 C -0.196 4.196 7 C -0.135 4.135 8 C -0.174 4.174 9 C -0.018 4.018 10 N -0.365 5.365 11 C 0.411 3.589 12 O -0.425 6.425 13 N -0.311 5.311 14 C 0.136 3.864 15 C -0.288 4.288 16 C 0.111 3.889 17 C -0.455 4.455 18 H 0.113 0.887 19 C -0.138 4.138 20 N -0.422 5.422 21 Si 0.753 3.247 22 H -0.195 1.195 23 H -0.222 1.222 24 H -0.169 1.169 25 C -0.333 4.333 26 C -0.012 4.012 27 N -0.328 5.328 28 C 0.021 3.979 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.236 0.764 42 H 0.164 0.836 43 H 0.099 0.901 44 H 0.125 0.875 45 H 0.145 0.855 46 H 0.130 0.870 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.521 17.001 6.230 20.941 hybrid contribution 0.384 -0.123 -0.492 0.636 sum -10.137 16.878 5.739 20.507 Atomic orbital electron populations 1.23306 0.76231 1.03982 1.02418 1.86569 1.23434 1.33051 1.83559 1.23536 0.91414 0.81407 0.71850 1.90654 1.67000 1.36421 1.45298 1.20968 0.86841 0.99212 0.99854 1.21867 1.02513 1.01106 0.94148 1.21452 0.95670 0.92508 1.03903 1.22013 0.95067 1.01580 0.98775 1.21728 0.98890 0.82666 0.98473 1.47153 1.05604 1.05375 1.78375 1.15603 0.80790 0.84289 0.78186 1.90910 1.75507 1.20148 1.55979 1.42380 1.05034 1.09917 1.73793 1.17676 0.87477 0.86007 0.95221 1.22273 1.02364 0.92045 1.12162 1.17875 0.90608 0.92522 0.87933 1.19590 1.00380 0.97086 1.28482 0.88659 1.26271 0.99786 0.93706 0.94083 1.69624 1.37841 1.04464 1.30308 0.86172 0.80317 0.81005 0.77189 1.19498 1.22219 1.16884 1.21629 0.97195 0.99160 1.15324 1.21229 0.96729 0.88435 0.94836 1.66618 1.01899 1.35063 1.29185 1.21361 0.78927 1.03272 0.94346 0.91959 0.87839 0.91837 0.90744 0.90428 0.92202 0.90680 0.90587 0.89839 0.90546 0.90850 0.89902 0.76428 0.83578 0.90144 0.87499 0.85453 0.86999 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.77 10.40 -39.26 -0.41 -4.18 16 3 C 0.48 5.30 6.56 36.01 0.24 5.53 16 4 O -0.51 -6.48 15.73 -18.75 -0.29 -6.78 16 5 C -0.07 -0.67 0.71 -155.54 -0.11 -0.78 16 6 C -0.14 -1.41 7.92 37.16 0.29 -1.12 16 7 C -0.10 -0.81 4.00 -26.69 -0.11 -0.92 16 8 C -0.14 -0.97 5.74 -26.61 -0.15 -1.12 16 9 C 0.11 0.91 6.39 -3.71 -0.02 0.89 16 10 N -0.63 -7.71 2.41 -178.50 -0.43 -8.14 16 11 C 0.71 12.21 8.15 -86.92 -0.71 11.50 16 12 O -0.55 -11.75 12.53 5.30 0.07 -11.69 16 13 N -0.66 -11.70 5.33 -15.87 -0.08 -11.78 16 14 C 0.36 8.08 7.52 -154.68 -1.16 6.92 16 15 C -0.26 -6.65 8.63 -38.46 -0.33 -6.98 16 16 C 0.12 3.15 5.27 -106.56 -0.56 2.59 16 17 C -0.43 -11.78 9.68 -37.65 -0.36 -12.15 16 18 H 0.10 2.80 8.06 -52.49 -0.42 2.37 16 19 C 0.08 2.16 5.48 -17.34 -0.09 2.06 16 20 N -0.80 -21.15 13.92 55.55 0.77 -20.38 16 21 Si 0.93 20.83 24.37 -169.99 -4.14 16.68 16 22 H -0.27 -5.78 6.55 56.52 0.37 -5.41 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.25 -5.68 6.68 56.52 0.38 -5.30 16 25 C -0.31 -7.55 7.14 -39.07 -0.28 -7.83 16 26 C 0.14 3.14 11.10 -18.04 -0.20 2.94 16 27 N -0.61 -13.59 10.36 -12.76 -0.13 -13.72 16 28 C 0.14 1.67 5.05 -3.71 -0.02 1.65 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.08 0.84 5.97 -51.93 -0.31 0.53 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 36 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.59 6.33 -51.93 -0.33 0.26 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.67 5.64 -51.93 -0.29 0.38 16 41 H 0.40 5.68 6.31 -40.82 -0.26 5.43 16 42 H 0.15 3.83 5.29 -52.56 -0.28 3.55 16 43 H 0.29 6.85 8.29 -40.82 -0.34 6.51 16 44 H 0.11 2.54 3.83 -52.48 -0.20 2.34 16 45 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 46 H 0.11 1.53 6.99 -51.93 -0.36 1.16 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -32.61 371.36 -7.86 -40.47 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.29 Total: 9.41 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -2.52 Total: 4.51 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.13 Total: -54.02 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.64 Total: -22.65 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.14 Total: 16.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.61 -7.86 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871733404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.790 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds