Wall clock time and date at job start Wed Apr 1 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 117.00095 * 2 1 4 4 O 1.20828 * 119.99888 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00058 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.49468 * 300.06678 * 5 3 2 7 7 C 1.53036 * 109.49504 * 180.02562 * 5 3 2 8 8 C 1.53041 * 109.53572 * 178.68251 * 7 5 3 9 9 C 1.53194 * 109.31290 * 61.36687 * 8 7 5 10 10 N 1.46927 * 108.77434 * 305.36447 * 9 8 7 11 11 C 1.34776 * 120.62965 * 233.58673 * 10 9 8 12 12 O 1.21579 * 119.99733 * 174.88630 * 11 10 9 13 13 N 1.34770 * 120.00136 * 354.88812 * 11 10 9 14 14 C 1.39459 * 120.00231 * 184.88513 * 13 11 10 15 15 C 1.38643 * 119.64705 * 18.23323 * 14 13 11 16 16 C 1.40814 * 118.67408 * 180.02562 * 15 14 13 17 17 C 1.41544 * 120.99712 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00378 * 334.54921 * 17 16 15 19 19 C 1.40037 * 120.00178 * 154.55157 * 17 16 15 20 20 N 1.30738 * 120.00159 * 165.63860 * 19 17 16 21 21 Si 1.86800 * 119.99681 * 345.63626 * 19 17 16 22 22 H 1.48508 * 109.46818 * 91.11873 * 21 19 17 23 23 H 1.48495 * 109.47172 * 211.11466 * 21 19 17 24 24 H 1.48500 * 109.47434 * 331.11761 * 21 19 17 25 25 C 1.41160 * 118.00725 * 359.97438 * 16 15 14 26 26 C 1.36590 * 119.12774 * 359.97438 * 25 16 15 27 27 N 1.32069 * 121.25771 * 359.73459 * 26 25 16 28 28 C 1.46929 * 118.73885 * 53.60774 * 10 9 8 29 29 H 1.08999 * 109.46651 * 300.00044 * 1 2 3 30 30 H 1.08993 * 109.46647 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47020 * 59.99978 * 1 2 3 32 32 H 1.08993 * 109.47523 * 60.00104 * 6 5 3 33 33 H 1.09005 * 109.46674 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.47202 * 299.99659 * 6 5 3 35 35 H 1.09000 * 109.46205 * 298.70365 * 7 5 3 36 36 H 1.09000 * 109.46176 * 58.66654 * 7 5 3 37 37 H 1.09001 * 109.49612 * 181.31940 * 8 7 5 38 38 H 1.08997 * 109.49896 * 301.37927 * 8 7 5 39 39 H 1.09000 * 109.58386 * 65.14838 * 9 8 7 40 40 H 1.08994 * 109.58628 * 185.57671 * 9 8 7 41 41 H 0.97003 * 119.99835 * 4.88677 * 13 11 10 42 42 H 1.07998 * 120.66259 * 0.02562 * 15 14 13 43 43 H 0.96998 * 120.00287 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.43855 * 179.97438 * 25 16 15 45 45 H 1.07998 * 119.37445 * 179.97438 * 26 25 16 46 46 H 1.09000 * 109.58465 * 186.60502 * 28 10 9 47 47 H 1.08999 * 109.58516 * 66.17436 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.1146 0.5797 1.2473 7 6 4.0010 2.7422 0.0002 8 6 5.5289 2.8235 0.0328 9 6 6.0988 2.1511 -1.2202 10 7 5.5690 0.7834 -1.3054 11 6 6.4017 -0.2691 -1.4290 12 8 5.9584 -1.4010 -1.4050 13 7 7.7256 -0.0670 -1.5790 14 6 8.5747 -1.1492 -1.8087 15 6 8.0479 -2.3515 -2.2551 16 6 8.9238 -3.4309 -2.4799 17 6 8.4389 -4.6804 -2.9351 18 1 7.4178 -4.9692 -2.7341 19 6 9.2832 -5.5422 -3.6461 20 7 8.9429 -6.7921 -3.8228 21 14 10.8957 -4.9059 -4.3421 22 1 11.9786 -5.1074 -3.3459 23 1 11.2241 -5.6462 -5.5867 24 1 10.7665 -3.4582 -4.6467 25 6 10.2998 -3.2296 -2.2378 26 6 10.7260 -2.0081 -1.7996 27 7 9.8769 -1.0155 -1.6046 28 6 4.1140 0.5849 -1.2539 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 3.8059 -0.4656 1.2462 33 1 5.2032 0.6374 1.2466 34 1 3.7256 1.0726 2.1382 35 1 3.6304 3.2312 -0.9008 36 1 3.5920 3.2416 0.8785 37 1 5.8371 3.8687 0.0569 38 1 5.9015 2.3137 0.9212 39 1 5.8008 2.7142 -2.1046 40 1 7.1863 2.1183 -1.1546 41 1 8.0880 0.8313 -1.5271 42 1 6.9870 -2.4580 -2.4270 43 1 9.5275 -7.3890 -4.3156 44 1 11.0063 -4.0308 -2.3969 45 1 11.7778 -1.8498 -1.6127 46 1 3.8921 -0.4814 -1.2106 47 1 3.6542 1.0203 -2.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871733404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:37 Heat of formation + Delta-G solvation = -82.747353 kcal Electronic energy + Delta-G solvation = -31094.440826 eV Core-core repulsion = 26856.172757 eV Total energy + Delta-G solvation = -4238.268069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39614 -41.62778 -40.30884 -38.93592 -37.55086 -36.42431 -35.59901 -34.70006 -33.20094 -32.87758 -30.68913 -28.74952 -28.26312 -27.90206 -26.65395 -25.17463 -24.10576 -23.16859 -22.90311 -21.43441 -20.05848 -19.85900 -19.24273 -18.52704 -18.05825 -17.78982 -17.63089 -17.41107 -16.65676 -16.54952 -16.07543 -15.95605 -15.74654 -15.44000 -14.96593 -14.93520 -14.87314 -14.68375 -14.51176 -14.28282 -14.11856 -13.76538 -13.52851 -13.47104 -13.07486 -12.94312 -12.85037 -12.72083 -12.56160 -12.41176 -12.08029 -12.04273 -11.84659 -11.78213 -11.57655 -11.49566 -11.43563 -11.26782 -10.77864 -10.17708 -10.06670 -9.80809 -8.98835 -8.95001 -6.72603 0.61461 0.74521 0.94175 1.26088 1.31340 1.44083 1.50076 1.69652 1.98770 2.11221 2.65188 2.69227 3.36306 3.50418 3.53801 3.60884 3.87703 3.95820 4.01425 4.08156 4.24974 4.29711 4.34448 4.41613 4.47852 4.53564 4.58908 4.63830 4.65493 4.69449 4.69827 4.74854 4.84478 4.92738 4.98785 5.05902 5.09772 5.20727 5.26193 5.31220 5.38576 5.42564 5.46065 5.73652 5.80620 6.09337 6.24598 6.58243 6.59242 6.64661 6.72858 7.40861 7.50696 8.09472 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002706 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.274760 B =10344.639520 C =11629.564838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.478 3.522 4 O -0.523 6.523 5 C -0.061 4.061 6 C -0.135 4.135 7 C -0.094 4.094 8 C -0.128 4.128 9 C 0.097 3.903 10 N -0.612 5.612 11 C 0.706 3.294 12 O -0.599 6.599 13 N -0.651 5.651 14 C 0.373 3.627 15 C -0.294 4.294 16 C 0.107 3.893 17 C -0.468 4.468 18 H 0.050 0.950 19 C 0.046 3.954 20 N -0.836 5.836 21 Si 0.984 3.016 22 H -0.244 1.244 23 H -0.278 1.278 24 H -0.254 1.254 25 C -0.322 4.322 26 C 0.147 3.853 27 N -0.594 5.594 28 C 0.144 3.856 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.418 0.582 42 H 0.127 0.873 43 H 0.300 0.700 44 H 0.116 0.884 45 H 0.176 0.824 46 H 0.083 0.917 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 20.407 6.416 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.321 3.679 4 O -0.411 6.411 5 C -0.063 4.063 6 C -0.193 4.193 7 C -0.131 4.131 8 C -0.166 4.166 9 C -0.025 4.025 10 N -0.349 5.349 11 C 0.408 3.592 12 O -0.477 6.477 13 N -0.301 5.301 14 C 0.147 3.853 15 C -0.320 4.320 16 C 0.098 3.902 17 C -0.498 4.498 18 H 0.069 0.931 19 C -0.171 4.171 20 N -0.461 5.461 21 Si 0.807 3.193 22 H -0.170 1.170 23 H -0.205 1.205 24 H -0.178 1.178 25 C -0.345 4.345 26 C -0.007 4.007 27 N -0.315 5.315 28 C 0.020 3.980 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.259 0.741 42 H 0.144 0.856 43 H 0.111 0.889 44 H 0.134 0.866 45 H 0.193 0.807 46 H 0.101 0.899 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.602 20.480 6.636 23.183 hybrid contribution -0.405 -1.053 -0.516 1.241 sum -9.007 19.426 6.120 22.270 Atomic orbital electron populations 1.23570 0.74636 1.05588 1.02826 1.86569 1.25177 1.33079 1.83267 1.23675 0.91734 0.81215 0.71306 1.90640 1.67426 1.36844 1.46227 1.20963 0.86213 1.00501 0.98631 1.21819 1.02143 1.00222 0.95077 1.21474 0.96559 0.90683 1.04425 1.22000 0.93870 1.03152 0.97531 1.22129 0.99517 0.80352 1.00491 1.47146 1.05320 1.05873 1.76534 1.15807 0.80862 0.84660 0.77895 1.90897 1.76203 1.22699 1.57881 1.42177 1.04818 1.09676 1.73474 1.17783 0.88043 0.86326 0.93159 1.22270 1.01660 0.93587 1.14440 1.18039 0.92249 0.92088 0.87800 1.19528 0.99136 0.99245 1.31916 0.93129 1.27047 1.02930 0.93554 0.93588 1.69643 1.39619 1.05469 1.31409 0.85290 0.76666 0.79815 0.77555 1.16967 1.20456 1.17788 1.21784 0.96083 1.00614 1.16014 1.21957 0.98825 0.87280 0.92603 1.66870 1.01440 1.34886 1.28271 1.21390 0.78531 1.02049 0.96040 0.91423 0.85779 0.91544 0.92667 0.90919 0.90602 0.90185 0.90057 0.86684 0.90983 0.88525 0.88970 0.74091 0.85563 0.88940 0.86617 0.80719 0.89868 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.37 -7.93 10.40 -51.42 -0.53 -8.46 16 3 C 0.48 10.36 6.56 71.24 0.47 10.83 16 4 O -0.52 -12.80 15.73 21.96 0.35 -12.46 16 5 C -0.06 -1.16 0.71 -52.85 -0.04 -1.20 16 6 C -0.14 -2.69 7.92 71.98 0.57 -2.12 16 7 C -0.09 -1.30 4.00 30.62 0.12 -1.18 16 8 C -0.13 -1.36 5.74 30.67 0.18 -1.19 16 9 C 0.10 1.35 6.39 86.36 0.55 1.90 16 10 N -0.61 -14.43 2.41 -836.92 -2.02 -16.45 16 11 C 0.71 24.39 8.15 179.06 1.46 25.85 16 12 O -0.60 -26.99 12.53 -3.96 -0.05 -27.04 16 13 N -0.65 -22.19 5.33 -322.38 -1.72 -23.91 16 14 C 0.37 16.51 7.52 132.76 1.00 17.51 16 15 C -0.29 -15.42 8.63 23.00 0.20 -15.22 16 16 C 0.11 5.81 5.27 -21.12 -0.11 5.70 16 17 C -0.47 -27.65 9.68 23.52 0.23 -27.42 16 18 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 19 C 0.05 2.47 5.48 85.29 0.47 2.94 16 20 N -0.84 -45.99 13.92 21.84 0.30 -45.69 16 21 Si 0.98 42.35 24.37 68.60 1.67 44.02 16 22 H -0.24 -9.56 6.55 99.48 0.65 -8.91 16 23 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.25 -11.22 6.68 99.48 0.66 -10.55 16 25 C -0.32 -15.31 7.14 22.60 0.16 -15.15 16 26 C 0.15 6.07 11.10 84.27 0.94 7.01 16 27 N -0.59 -25.01 10.36 -194.27 -2.01 -27.02 16 28 C 0.14 3.28 5.05 86.36 0.44 3.72 16 29 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 32 H 0.05 1.30 8.11 -2.39 -0.02 1.28 16 33 H 0.07 1.52 5.97 -2.38 -0.01 1.50 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.08 8.13 -2.39 -0.02 1.06 16 36 H 0.08 1.10 8.07 -2.39 -0.02 1.09 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.89 6.33 -2.39 -0.02 0.87 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.14 5.64 -2.39 -0.01 1.13 16 41 H 0.42 10.76 6.31 -92.71 -0.59 10.18 16 42 H 0.13 7.12 5.29 -4.02 -0.02 7.10 16 43 H 0.30 14.55 8.29 -92.71 -0.77 13.78 16 44 H 0.12 5.25 3.83 -2.91 -0.01 5.24 16 45 H 0.18 5.58 8.06 -2.91 -0.02 5.56 16 46 H 0.08 2.43 6.99 -2.39 -0.02 2.41 16 47 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -75.34 371.36 4.14 -71.19 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.34 Total: 32.23 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 7.82 Total: 13.57 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -5.45 Total: -113.07 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.24 Total: -47.96 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.67 Total: 44.02 kcal Total: -75.34 4.14 -71.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871733404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.553 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds