Wall clock time and date at job start Wed Apr 1 2020 05:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.62585 * 2 1 4 4 F 1.39895 * 109.47023 * 296.89314 * 3 2 1 5 5 F 1.39895 * 109.47166 * 56.89518 * 3 2 1 6 6 F 1.39899 * 109.46943 * 176.89373 * 3 2 1 7 7 C 1.55143 * 110.70741 * 123.29463 * 2 1 3 8 8 C 1.54909 * 101.65320 * 82.72930 * 7 2 1 9 9 N 1.47849 * 104.79392 * 37.07075 * 8 7 2 10 10 C 1.46896 * 110.99825 * 213.63676 * 9 8 7 11 11 C 1.50701 * 109.47304 * 290.84370 * 10 9 8 12 12 O 1.21284 * 119.99629 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00191 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99606 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47517 * 270.00272 * 14 13 11 16 16 H 1.08002 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00472 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99350 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47339 * 179.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 300.00306 * 19 17 15 22 22 H 1.48504 * 109.46636 * 59.99865 * 19 17 15 23 23 C 1.46501 * 119.99949 * 0.02562 * 13 11 10 24 24 C 1.52998 * 109.46510 * 269.99484 * 23 13 11 25 25 C 1.47203 * 109.46712 * 180.02562 * 24 23 13 26 26 N 7.73782 * 56.84374 * 216.71355 * 2 1 3 27 27 C 1.47441 * 108.56813 * 335.90375 * 9 8 7 28 28 H 1.09008 * 109.46812 * 183.10559 * 1 2 3 29 29 H 1.08997 * 109.47194 * 303.10325 * 1 2 3 30 30 H 1.08993 * 109.47354 * 63.10495 * 1 2 3 31 31 H 1.08989 * 110.99259 * 200.82287 * 7 2 1 32 32 H 1.09009 * 110.98856 * 324.60134 * 7 2 1 33 33 H 1.09000 * 110.37069 * 278.24427 * 8 7 2 34 34 H 1.08994 * 110.37318 * 155.90298 * 8 7 2 35 35 H 1.09003 * 109.47420 * 170.84194 * 10 9 8 36 36 H 1.09000 * 109.47755 * 50.84476 * 10 9 8 37 37 H 1.09005 * 109.46643 * 150.00803 * 14 13 11 38 38 H 1.08998 * 109.47481 * 30.00637 * 14 13 11 39 39 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.47217 * 29.99484 * 23 13 11 41 41 H 1.08996 * 109.46963 * 149.99579 * 23 13 11 42 42 H 1.08994 * 109.47380 * 299.99900 * 24 23 13 43 43 H 1.08996 * 109.47097 * 60.00813 * 24 23 13 44 44 H 1.08991 * 109.89056 * 120.39417 * 27 9 8 45 45 H 1.09003 * 109.89195 * 241.58539 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0690 1.4319 0.0000 4 9 1.6749 2.0785 -1.1763 5 9 1.5591 2.1221 1.1048 6 9 3.4659 1.4044 0.0715 7 6 2.0786 -0.7966 1.2130 8 6 2.0097 -2.2525 0.6883 9 7 2.3701 -2.1556 -0.7423 10 6 1.6404 -3.1520 -1.5377 11 6 2.1464 -4.5313 -1.2019 12 8 3.0284 -4.6704 -0.3811 13 7 1.6188 -5.6101 -1.8136 14 6 2.1111 -6.9508 -1.4874 15 6 3.2537 -7.3033 -2.4045 16 1 3.5808 -6.5990 -3.1551 17 6 3.8816 -8.5251 -2.2856 18 7 3.4836 -9.3826 -1.3713 19 14 5.2975 -8.9624 -3.4229 20 1 5.7966 -10.3212 -3.0921 21 1 4.8274 -8.9363 -4.8312 22 1 6.3946 -7.9767 -3.2489 23 6 0.5538 -5.4420 -2.8054 24 6 -0.8063 -5.4917 -2.1064 25 6 -1.8765 -5.3234 -3.1030 26 7 -2.7020 -5.1930 -3.8726 27 6 2.0757 -0.7884 -1.2092 28 1 -0.3633 -1.0263 0.0557 29 1 -0.3633 0.5612 0.8608 30 1 -0.3634 0.4648 -0.9164 31 1 3.1063 -0.5102 1.4357 32 1 1.4407 -0.6654 2.0871 33 1 1.0002 -2.6484 0.7993 34 1 2.7252 -2.8811 1.2182 35 1 1.7971 -2.9558 -2.5984 36 1 0.5762 -3.0901 -1.3102 37 1 1.3061 -7.6745 -1.6153 38 1 2.4559 -6.9698 -0.4536 39 1 3.9251 -10.2423 -1.2878 40 1 0.6708 -4.4802 -3.3046 41 1 0.6134 -6.2433 -3.5418 42 1 -0.9233 -6.4535 -1.6072 43 1 -0.8659 -4.6904 -1.3700 44 1 2.9872 -0.3181 -1.5777 45 1 1.3262 -0.8199 -2.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879999891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:18 Heat of formation + Delta-G solvation = -153.034270 kcal Electronic energy + Delta-G solvation = -31617.155329 eV Core-core repulsion = 26833.982650 eV Total energy + Delta-G solvation = -4783.172679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.36266 -47.83888 -47.81471 -40.13471 -38.73947 -36.89523 -35.27400 -33.86649 -32.85275 -30.88485 -30.21981 -28.53786 -27.29567 -26.43235 -24.76944 -24.04591 -22.74322 -21.38254 -20.57856 -18.66995 -18.54583 -18.44703 -17.79240 -17.63300 -16.64137 -16.49792 -16.10953 -15.19073 -15.10522 -14.99065 -14.77361 -14.63375 -14.54396 -14.26296 -14.19521 -14.01951 -13.98104 -13.91692 -13.73173 -13.52376 -13.07353 -12.94097 -12.81038 -12.55805 -12.49127 -12.42317 -12.07131 -12.02979 -11.75225 -11.61182 -11.50114 -11.29028 -11.24277 -11.06607 -11.02011 -10.86859 -10.61656 -10.19688 -9.73174 -9.05931 -8.47653 -8.36593 -7.86162 -6.09705 -4.14193 2.44182 2.66680 2.74661 3.24751 3.30590 3.35207 3.36353 3.39864 3.48548 3.54214 3.71480 3.86945 4.18636 4.31755 4.35453 4.41813 4.50546 4.80426 4.88005 5.00692 5.01709 5.04784 5.10159 5.17157 5.24808 5.26270 5.29737 5.35588 5.41996 5.50928 5.54362 5.59206 5.76549 5.79764 6.01507 6.07286 6.68966 6.77848 6.97462 7.33109 7.41319 7.51148 7.86534 8.16154 8.23541 8.83530 8.98426 9.51561 10.98366 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002953 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.635352 B = 9479.196123 C =11021.025147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.465 3.535 4 F -0.183 7.183 5 F -0.183 7.183 6 F -0.177 7.177 7 C -0.120 4.120 8 C 0.053 3.947 9 N -0.501 5.501 10 C 0.026 3.974 11 C 0.509 3.491 12 O -0.512 6.512 13 N -0.599 5.599 14 C 0.247 3.753 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.287 1.287 21 H -0.277 1.277 22 H -0.276 1.276 23 C 0.118 3.882 24 C -0.050 4.050 25 C 0.216 3.784 26 N -0.444 5.444 27 C 0.056 3.944 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 19.087 3.777 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C 0.410 3.590 4 F -0.164 7.164 5 F -0.164 7.164 6 F -0.158 7.158 7 C -0.158 4.158 8 C -0.074 4.074 9 N -0.225 5.225 10 C -0.105 4.105 11 C 0.294 3.706 12 O -0.386 6.386 13 N -0.332 5.332 14 C 0.129 3.871 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.212 1.212 21 H -0.203 1.203 22 H -0.201 1.201 23 C -0.009 4.009 24 C -0.091 4.091 25 C -0.102 4.102 26 N -0.122 5.122 27 C -0.072 4.072 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.454 18.907 3.091 20.940 hybrid contribution 0.286 0.043 -0.383 0.480 sum -8.168 18.949 2.708 20.812 Atomic orbital electron populations 1.21883 0.90467 1.04060 1.03612 1.23175 0.99068 0.89897 1.01524 1.20298 0.75927 0.89403 0.73366 1.93175 1.90682 1.83998 1.48587 1.93165 1.86995 1.82032 1.54243 1.93195 1.29885 1.96797 1.95945 1.22930 1.02682 0.94850 0.95311 1.23103 1.00707 0.95435 0.88161 1.63321 1.55385 1.01030 1.02788 1.22425 0.96141 0.92214 0.99707 1.20089 0.83087 0.85247 0.82188 1.90691 1.29037 1.85719 1.33192 1.48222 1.35749 1.09087 1.40163 1.19319 0.94465 0.75452 0.97902 1.21383 1.16622 1.00979 1.17793 0.92407 1.24907 0.97180 0.96218 0.95611 1.69908 1.41756 1.08275 1.33387 0.86580 0.82654 0.77509 0.80836 1.21231 1.20270 1.20119 1.21293 0.84243 1.03598 0.91777 1.19904 0.89253 1.06093 0.93895 1.29115 0.94077 0.92871 0.94157 1.81220 1.11168 1.09404 1.10363 1.22946 1.00899 0.89055 0.94336 0.90356 0.90928 0.91062 0.89146 0.89398 0.93264 0.87782 0.88120 0.92283 0.94824 0.93593 0.92627 0.90822 0.88680 0.86434 0.87872 0.89287 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.19 37.16 0.30 -0.64 16 2 C -0.13 -1.13 0.45 -152.68 -0.07 -1.20 16 3 C 0.46 4.39 2.24 37.16 0.08 4.47 16 4 F -0.18 -1.79 16.83 2.25 0.04 -1.75 16 5 F -0.18 -1.76 16.62 2.25 0.04 -1.72 16 6 F -0.18 -1.92 15.79 2.25 0.04 -1.88 16 7 C -0.12 -1.07 5.89 -24.59 -0.14 -1.21 16 8 C 0.05 0.59 5.42 -2.29 -0.01 0.58 16 9 N -0.50 -6.16 4.86 -232.69 -1.13 -7.29 16 10 C 0.03 0.32 3.61 -4.98 -0.02 0.30 16 11 C 0.51 8.76 7.47 -10.98 -0.08 8.67 16 12 O -0.51 -11.25 14.62 5.55 0.08 -11.17 16 13 N -0.60 -10.31 2.46 -175.07 -0.43 -10.74 16 14 C 0.25 5.65 5.16 -5.20 -0.03 5.63 16 15 C -0.53 -13.87 9.39 -34.44 -0.32 -14.20 16 16 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.12 1.44 5.17 -4.04 -0.02 1.42 16 24 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 25 C 0.22 2.41 15.43 -20.76 -0.32 2.09 16 26 N -0.44 -6.19 18.54 42.16 0.78 -5.41 16 27 C 0.06 0.54 5.76 -2.84 -0.02 0.52 16 28 H 0.08 0.48 7.41 -51.92 -0.38 0.09 16 29 H 0.07 0.44 7.72 -51.93 -0.40 0.04 16 30 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 31 H 0.09 0.88 7.34 -51.94 -0.38 0.50 16 32 H 0.09 0.63 8.04 -51.92 -0.42 0.22 16 33 H 0.05 0.49 7.17 -51.93 -0.37 0.12 16 34 H 0.10 1.45 7.38 -51.93 -0.38 1.06 16 35 H 0.10 1.08 7.29 -51.93 -0.38 0.70 16 36 H 0.06 0.53 6.89 -51.93 -0.36 0.17 16 37 H 0.03 0.76 8.07 -51.93 -0.42 0.35 16 38 H 0.05 1.21 7.42 -51.93 -0.39 0.82 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 41 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 42 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 0.75 7.22 -51.93 -0.37 0.37 16 44 H 0.09 0.92 7.36 -51.93 -0.38 0.54 16 45 H 0.07 0.57 7.25 -51.93 -0.38 0.19 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -32.38 382.87 -6.18 -38.55 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -6.15 Total: -3.37 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.92 Total: 7.42 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.04 Total: -47.91 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.11 Total: -5.35 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.38 -6.18 -38.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879999891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.481 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds