Wall clock time and date at job start Wed Apr 1 2020 05:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.62585 * 2 1 4 4 F 1.39895 * 109.47023 * 296.89314 * 3 2 1 5 5 F 1.39895 * 109.47166 * 56.89518 * 3 2 1 6 6 F 1.39899 * 109.46943 * 176.89373 * 3 2 1 7 7 C 1.55143 * 110.70741 * 123.29463 * 2 1 3 8 8 C 1.54909 * 101.65320 * 82.72930 * 7 2 1 9 9 N 1.47849 * 104.79392 * 37.07075 * 8 7 2 10 10 C 1.46896 * 110.99825 * 213.63676 * 9 8 7 11 11 C 1.50701 * 109.47304 * 290.84370 * 10 9 8 12 12 O 1.21284 * 119.99629 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00191 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99606 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47517 * 270.00272 * 14 13 11 16 16 H 1.08002 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00472 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99350 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47339 * 179.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 300.00306 * 19 17 15 22 22 H 1.48504 * 109.46636 * 59.99865 * 19 17 15 23 23 C 1.46501 * 119.99949 * 0.02562 * 13 11 10 24 24 C 1.52998 * 109.46510 * 269.99484 * 23 13 11 25 25 C 1.47203 * 109.46712 * 180.02562 * 24 23 13 26 26 N 7.73782 * 56.84374 * 216.71355 * 2 1 3 27 27 C 1.47441 * 108.56813 * 335.90375 * 9 8 7 28 28 H 1.09008 * 109.46812 * 183.10559 * 1 2 3 29 29 H 1.08997 * 109.47194 * 303.10325 * 1 2 3 30 30 H 1.08993 * 109.47354 * 63.10495 * 1 2 3 31 31 H 1.08989 * 110.99259 * 200.82287 * 7 2 1 32 32 H 1.09009 * 110.98856 * 324.60134 * 7 2 1 33 33 H 1.09000 * 110.37069 * 278.24427 * 8 7 2 34 34 H 1.08994 * 110.37318 * 155.90298 * 8 7 2 35 35 H 1.09003 * 109.47420 * 170.84194 * 10 9 8 36 36 H 1.09000 * 109.47755 * 50.84476 * 10 9 8 37 37 H 1.09005 * 109.46643 * 150.00803 * 14 13 11 38 38 H 1.08998 * 109.47481 * 30.00637 * 14 13 11 39 39 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.47217 * 29.99484 * 23 13 11 41 41 H 1.08996 * 109.46963 * 149.99579 * 23 13 11 42 42 H 1.08994 * 109.47380 * 299.99900 * 24 23 13 43 43 H 1.08996 * 109.47097 * 60.00813 * 24 23 13 44 44 H 1.08991 * 109.89056 * 120.39417 * 27 9 8 45 45 H 1.09003 * 109.89195 * 241.58539 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0690 1.4319 0.0000 4 9 1.6749 2.0785 -1.1763 5 9 1.5591 2.1221 1.1048 6 9 3.4659 1.4044 0.0715 7 6 2.0786 -0.7966 1.2130 8 6 2.0097 -2.2525 0.6883 9 7 2.3701 -2.1556 -0.7423 10 6 1.6404 -3.1520 -1.5377 11 6 2.1464 -4.5313 -1.2019 12 8 3.0284 -4.6704 -0.3811 13 7 1.6188 -5.6101 -1.8136 14 6 2.1111 -6.9508 -1.4874 15 6 3.2537 -7.3033 -2.4045 16 1 3.5808 -6.5990 -3.1551 17 6 3.8816 -8.5251 -2.2856 18 7 3.4836 -9.3826 -1.3713 19 14 5.2975 -8.9624 -3.4229 20 1 5.7966 -10.3212 -3.0921 21 1 4.8274 -8.9363 -4.8312 22 1 6.3946 -7.9767 -3.2489 23 6 0.5538 -5.4420 -2.8054 24 6 -0.8063 -5.4917 -2.1064 25 6 -1.8765 -5.3234 -3.1030 26 7 -2.7020 -5.1930 -3.8726 27 6 2.0757 -0.7884 -1.2092 28 1 -0.3633 -1.0263 0.0557 29 1 -0.3633 0.5612 0.8608 30 1 -0.3634 0.4648 -0.9164 31 1 3.1063 -0.5102 1.4357 32 1 1.4407 -0.6654 2.0871 33 1 1.0002 -2.6484 0.7993 34 1 2.7252 -2.8811 1.2182 35 1 1.7971 -2.9558 -2.5984 36 1 0.5762 -3.0901 -1.3102 37 1 1.3061 -7.6745 -1.6153 38 1 2.4559 -6.9698 -0.4536 39 1 3.9251 -10.2423 -1.2878 40 1 0.6708 -4.4802 -3.3046 41 1 0.6134 -6.2433 -3.5418 42 1 -0.9233 -6.4535 -1.6072 43 1 -0.8659 -4.6904 -1.3700 44 1 2.9872 -0.3181 -1.5777 45 1 1.3262 -0.8199 -2.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879999891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:18 Heat of formation + Delta-G solvation = -173.673381 kcal Electronic energy + Delta-G solvation = -31618.050308 eV Core-core repulsion = 26833.982650 eV Total energy + Delta-G solvation = -4784.067658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.11312 -48.59531 -48.57410 -41.15620 -39.83475 -37.92591 -36.60359 -34.96296 -34.51433 -32.11099 -31.03506 -29.79407 -28.30820 -27.42499 -25.72274 -25.25336 -24.22769 -22.32290 -21.28528 -19.89298 -19.35119 -19.19459 -18.76136 -18.48519 -18.29207 -17.82709 -17.26202 -16.53364 -16.16211 -15.91132 -15.80046 -15.58803 -15.45988 -15.31294 -15.02680 -14.95611 -14.77996 -14.73396 -14.57702 -14.56058 -14.22849 -13.98396 -13.73253 -13.60106 -13.49980 -13.42814 -13.20410 -13.05796 -12.96141 -12.76679 -12.67136 -12.50484 -12.42174 -12.15859 -12.13495 -11.95139 -11.82733 -11.78022 -11.63864 -10.55469 -10.43726 -9.42628 -9.19997 -8.15173 -6.26818 1.41465 1.44651 1.50876 1.71516 1.73650 1.87210 1.97856 2.27213 2.45735 2.73076 2.79998 2.99005 3.04307 3.16069 3.23062 3.60268 3.65794 3.82475 3.85786 4.06304 4.15114 4.21163 4.26003 4.27884 4.44829 4.54057 4.64201 4.66473 4.77307 4.80912 4.88255 4.89259 4.97437 5.09357 5.13977 5.15799 5.22791 5.38561 5.65377 5.88742 5.95271 6.00701 6.17512 6.63981 6.81286 6.88769 7.39221 7.63613 8.90963 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002953 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.635352 B = 9479.196123 C =11021.025147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.463 3.537 4 F -0.184 7.184 5 F -0.184 7.184 6 F -0.189 7.189 7 C -0.114 4.114 8 C 0.055 3.945 9 N -0.532 5.532 10 C 0.038 3.962 11 C 0.502 3.498 12 O -0.571 6.571 13 N -0.600 5.600 14 C 0.263 3.737 15 C -0.539 4.539 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.954 3.046 20 H -0.283 1.283 21 H -0.263 1.263 22 H -0.281 1.281 23 C 0.113 3.887 24 C -0.037 4.037 25 C 0.246 3.754 26 N -0.490 5.490 27 C 0.058 3.942 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.033 0.967 38 H 0.003 0.997 39 H 0.265 0.735 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.138 0.862 44 H 0.076 0.924 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.003 20.745 2.749 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C 0.409 3.591 4 F -0.165 7.165 5 F -0.165 7.165 6 F -0.171 7.171 7 C -0.152 4.152 8 C -0.072 4.072 9 N -0.256 5.256 10 C -0.093 4.093 11 C 0.290 3.710 12 O -0.449 6.449 13 N -0.332 5.332 14 C 0.142 3.858 15 C -0.578 4.578 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.780 3.220 20 H -0.208 1.208 21 H -0.188 1.188 22 H -0.207 1.207 23 C -0.012 4.012 24 C -0.078 4.078 25 C -0.072 4.072 26 N -0.168 5.168 27 C -0.070 4.070 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.051 0.949 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.137 0.863 43 H 0.156 0.844 44 H 0.094 0.906 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.194 20.595 2.027 23.069 hybrid contribution 0.863 -0.451 -0.032 0.974 sum -9.331 20.144 1.995 22.290 Atomic orbital electron populations 1.21931 0.88388 1.05066 1.04436 1.23141 1.00486 0.88612 1.00472 1.20486 0.75384 0.89996 0.73270 1.93172 1.90605 1.84110 1.48622 1.93163 1.86908 1.82145 1.54288 1.93174 1.31024 1.96873 1.95996 1.22872 1.02462 0.93530 0.96378 1.22968 1.00409 0.96123 0.87658 1.63138 1.56798 1.02384 1.03317 1.22385 0.98029 0.88231 1.00625 1.21109 0.82024 0.87039 0.80837 1.90674 1.31722 1.86757 1.35732 1.48082 1.36836 1.07130 1.41156 1.18734 0.93590 0.78659 0.94842 1.21754 1.17461 1.00747 1.17828 0.92955 1.25688 0.99550 0.96461 0.97024 1.70012 1.43056 1.08637 1.34892 0.85666 0.79587 0.77031 0.79724 1.20837 1.18796 1.20677 1.21512 0.84063 1.04925 0.90676 1.19838 0.86760 1.07630 0.93575 1.29165 0.93398 0.91352 0.93237 1.81269 1.12684 1.11172 1.11678 1.22919 1.01241 0.87479 0.95346 0.89168 0.90335 0.90151 0.90653 0.87403 0.91493 0.91629 0.86108 0.87964 0.94909 0.97857 0.92655 0.87477 0.90089 0.86345 0.84420 0.90573 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.19 71.98 0.59 -0.69 16 2 C -0.12 -1.78 0.45 -51.00 -0.02 -1.80 16 3 C 0.46 7.92 2.24 71.98 0.16 8.08 16 4 F -0.18 -3.19 16.83 44.97 0.76 -2.43 16 5 F -0.18 -3.19 16.62 44.97 0.75 -2.44 16 6 F -0.19 -3.98 15.79 44.97 0.71 -3.27 16 7 C -0.11 -1.87 5.89 31.98 0.19 -1.68 16 8 C 0.06 1.18 5.42 86.77 0.47 1.65 16 9 N -0.53 -12.08 4.86 -890.11 -4.33 -16.41 16 10 C 0.04 0.78 3.61 85.56 0.31 1.09 16 11 C 0.50 16.82 7.47 87.66 0.65 17.48 16 12 O -0.57 -25.84 14.62 -3.04 -0.04 -25.88 16 13 N -0.60 -20.09 2.46 -826.17 -2.03 -22.12 16 14 C 0.26 12.30 5.16 85.63 0.44 12.74 16 15 C -0.54 -28.72 9.39 25.60 0.24 -28.48 16 16 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 17 C 0.01 0.65 5.46 84.66 0.46 1.11 16 18 N -0.93 -53.30 13.29 21.45 0.28 -53.02 16 19 Si 0.95 43.53 29.54 68.60 2.03 45.55 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 C 0.11 2.47 5.17 86.38 0.45 2.92 16 24 C -0.04 -0.57 6.03 28.79 0.17 -0.39 16 25 C 0.25 4.74 15.43 89.44 1.38 6.12 16 26 N -0.49 -12.55 18.54 20.01 0.37 -12.18 16 27 C 0.06 0.95 5.76 86.65 0.50 1.45 16 28 H 0.09 0.64 7.41 -2.38 -0.02 0.62 16 29 H 0.08 0.65 7.72 -2.39 -0.02 0.64 16 30 H 0.08 0.62 8.03 -2.39 -0.02 0.60 16 31 H 0.07 1.46 7.34 -2.39 -0.02 1.44 16 32 H 0.11 1.31 8.04 -2.38 -0.02 1.29 16 33 H 0.07 1.15 7.17 -2.39 -0.02 1.13 16 34 H 0.07 1.91 7.38 -2.39 -0.02 1.89 16 35 H 0.12 2.04 7.29 -2.39 -0.02 2.02 16 36 H 0.10 1.23 6.89 -2.39 -0.02 1.22 16 37 H 0.03 1.52 8.07 -2.38 -0.02 1.50 16 38 H 0.00 0.18 7.42 -2.39 -0.02 0.16 16 39 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 40 H 0.11 1.66 6.44 -2.39 -0.02 1.65 16 41 H 0.08 2.04 8.07 -2.39 -0.02 2.02 16 42 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.14 1.25 7.22 -2.39 -0.02 1.24 16 44 H 0.08 1.46 7.36 -2.39 -0.02 1.44 16 45 H 0.10 1.10 7.25 -2.39 -0.02 1.09 16 Total: -1.00 -74.57 382.87 5.51 -69.06 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.02 Total: 3.54 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 5.99 Total: 19.59 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -5.70 Total: -103.72 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.04 Total: -25.88 kcal Atomic # 9 Polarization: -10.35 SS G_CDS: 2.21 Total: -8.14 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -74.57 5.51 -69.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879999891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.610 kcal (2) G-P(sol) polarization free energy of solvation -74.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds