Wall clock time and date at job start Wed Apr 1 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 110.64642 * 2 1 4 4 F 1.39898 * 109.47061 * 298.29938 * 3 2 1 5 5 F 1.39906 * 109.47189 * 58.29552 * 3 2 1 6 6 F 1.39894 * 109.47338 * 178.29844 * 3 2 1 7 7 C 1.54591 * 110.72908 * 236.84557 * 2 1 3 8 8 C 1.53996 * 105.14129 * 263.60418 * 7 2 1 9 9 N 1.47903 * 107.05746 * 1.21952 * 8 7 2 10 10 C 1.46902 * 111.00174 * 214.15935 * 9 8 7 11 11 C 1.50693 * 109.47209 * 176.64276 * 10 9 8 12 12 O 1.21287 * 119.99909 * 6.03526 * 11 10 9 13 13 N 1.34773 * 120.00174 * 186.04008 * 11 10 9 14 14 C 1.46498 * 120.00412 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47239 * 270.00276 * 14 13 11 16 16 H 1.08001 * 119.99755 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00084 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99936 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99869 * 359.71631 * 17 15 14 20 20 H 1.48508 * 109.47350 * 270.27717 * 19 17 15 21 21 H 1.48492 * 109.47208 * 30.27975 * 19 17 15 22 22 H 1.48500 * 109.47010 * 150.28116 * 19 17 15 23 23 C 1.46501 * 119.99821 * 359.97438 * 13 11 10 24 24 C 1.53000 * 109.47323 * 270.00166 * 23 13 11 25 25 C 1.47198 * 109.47123 * 179.97438 * 24 23 13 26 26 N 8.88995 * 121.62192 * 160.63911 * 2 1 3 27 27 C 1.48538 * 105.82042 * 334.67509 * 9 8 7 28 28 H 1.09003 * 109.47204 * 181.69497 * 1 2 3 29 29 H 1.08996 * 109.47485 * 301.69985 * 1 2 3 30 30 H 1.09003 * 109.46917 * 61.70461 * 1 2 3 31 31 H 1.08999 * 110.31188 * 144.68465 * 7 2 1 32 32 H 1.09007 * 110.39201 * 22.56103 * 7 2 1 33 33 H 1.09002 * 109.91693 * 241.87213 * 8 7 2 34 34 H 1.08998 * 109.91815 * 120.57617 * 8 7 2 35 35 H 1.08995 * 109.47077 * 56.63607 * 10 9 8 36 36 H 1.09006 * 109.46783 * 296.63790 * 10 9 8 37 37 H 1.08999 * 109.47735 * 150.00022 * 14 13 11 38 38 H 1.09001 * 109.46892 * 29.99159 * 14 13 11 39 39 H 0.97007 * 120.00225 * 179.72081 * 18 17 15 40 40 H 1.08997 * 109.46923 * 30.00428 * 23 13 11 41 41 H 1.08998 * 109.46985 * 149.99859 * 23 13 11 42 42 H 1.09003 * 109.46526 * 300.00303 * 24 23 13 43 43 H 1.08997 * 109.46617 * 59.99754 * 24 23 13 44 44 H 1.08991 * 110.66721 * 157.64415 * 27 9 8 45 45 H 1.09005 * 110.66176 * 280.77029 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 9 1.6487 2.0886 -1.1613 5 9 1.5852 2.1126 1.1222 6 9 3.4675 1.4033 0.0392 7 6 2.0771 -0.7907 -1.2105 8 6 2.3744 -2.2012 -0.6684 9 7 1.9856 -2.2084 0.7586 10 6 2.8783 -3.0719 1.5431 11 6 2.5037 -2.9898 3.0004 12 8 1.5179 -2.3698 3.3391 13 7 3.2641 -3.6053 3.9274 14 6 2.9003 -3.5250 5.3442 15 6 3.5619 -2.3219 5.9654 16 1 4.1909 -1.6814 5.3649 17 6 3.3652 -2.0395 7.3005 18 7 3.9430 -0.9899 7.8427 19 14 2.2720 -3.1437 8.3374 20 1 0.8720 -2.6522 8.2767 21 1 2.3324 -4.5321 7.8143 22 1 2.7427 -3.1244 9.7458 23 6 4.4546 -4.3547 3.5182 24 6 4.0706 -5.8090 3.2383 25 6 5.2667 -6.5618 2.8265 26 7 6.1911 -7.1419 2.5096 27 6 2.0782 -0.7965 1.2106 28 1 -0.3634 -1.0272 0.0304 29 1 -0.3634 0.5400 0.8743 30 1 -0.3633 0.4871 -0.9049 31 1 2.9912 -0.3281 -1.5827 32 1 1.3291 -0.8395 -2.0019 33 1 3.4380 -2.4194 -0.7646 34 1 1.7899 -2.9403 -1.2163 35 1 3.9090 -2.7421 1.4137 36 1 2.7807 -4.1021 1.2004 37 1 3.2330 -4.4277 5.8566 38 1 1.8181 -3.4326 5.4367 39 1 3.8013 -0.7889 8.7810 40 1 4.8720 -3.9088 2.6154 41 1 5.1965 -4.3219 4.3160 42 1 3.6532 -6.2547 4.1412 43 1 3.3286 -5.8417 2.4405 44 1 1.4575 -0.6332 2.0916 45 1 3.1142 -0.5245 1.4129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879999895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:21 Heat of formation + Delta-G solvation = -148.121788 kcal Electronic energy + Delta-G solvation = -31996.538107 eV Core-core repulsion = 27213.578449 eV Total energy + Delta-G solvation = -4782.959658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.16339 -47.66209 -47.59289 -40.10891 -38.71809 -36.93827 -35.38703 -33.95822 -32.79788 -31.07950 -30.19862 -28.65207 -27.11727 -26.56162 -24.86449 -24.08742 -22.43006 -21.27430 -20.40487 -18.60851 -18.40513 -18.25193 -17.84799 -17.54873 -16.87841 -16.69224 -15.84079 -15.66131 -15.03313 -14.79495 -14.73806 -14.54111 -14.43980 -14.17623 -14.06494 -13.93529 -13.83533 -13.78475 -13.73380 -13.30927 -13.17331 -12.85771 -12.66951 -12.56966 -12.52915 -12.46907 -12.11459 -12.05296 -11.94078 -11.62862 -11.40656 -11.24635 -11.13049 -11.05311 -11.03861 -10.82548 -10.59068 -10.24411 -9.62712 -9.15969 -8.64975 -8.50946 -7.95769 -6.14359 -4.14449 2.62099 2.63251 2.71449 3.13274 3.24256 3.29068 3.31799 3.37988 3.61290 3.71848 3.86190 3.98465 4.20386 4.33850 4.43963 4.52196 4.64572 4.79324 4.88764 4.95896 4.98859 5.05092 5.16479 5.19406 5.26861 5.38550 5.39501 5.46174 5.61609 5.63688 5.68108 5.68883 5.73836 5.95981 6.08470 6.11645 6.50492 6.64210 6.73494 6.86549 7.14995 7.47819 7.52597 8.02304 8.38541 8.78629 8.89127 9.44960 10.98804 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009111 B = 0.003772 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.570046 B = 7422.282366 C = 9492.671788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C 0.460 3.540 4 F -0.185 7.185 5 F -0.176 7.176 6 F -0.183 7.183 7 C -0.120 4.120 8 C 0.037 3.963 9 N -0.491 5.491 10 C 0.024 3.976 11 C 0.509 3.491 12 O -0.514 6.514 13 N -0.592 5.592 14 C 0.216 3.784 15 C -0.532 4.532 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.265 1.265 22 H -0.286 1.286 23 C 0.116 3.884 24 C -0.050 4.050 25 C 0.215 3.785 26 N -0.442 5.442 27 C 0.046 3.954 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.265 0.735 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -2.646 -18.729 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 C 0.405 3.595 4 F -0.166 7.166 5 F -0.158 7.158 6 F -0.164 7.164 7 C -0.158 4.158 8 C -0.091 4.091 9 N -0.215 5.215 10 C -0.108 4.108 11 C 0.295 3.705 12 O -0.388 6.388 13 N -0.325 5.325 14 C 0.096 3.904 15 C -0.571 4.571 16 H 0.092 0.908 17 C -0.129 4.129 18 N -0.533 5.533 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.190 1.190 22 H -0.212 1.212 23 C -0.010 4.010 24 C -0.092 4.092 25 C -0.103 4.103 26 N -0.119 5.119 27 C -0.081 4.081 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.140 0.860 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.189 -3.253 -18.744 19.480 hybrid contribution 0.305 0.329 0.737 0.863 sum -3.884 -2.924 -18.007 18.651 Atomic orbital electron populations 1.21767 0.89731 1.04874 1.02713 1.22792 0.99962 0.88780 0.99967 1.20437 0.75642 0.89883 0.73495 1.93155 1.89926 1.83604 1.49917 1.93212 1.87732 1.82298 1.52525 1.93164 1.30294 1.96860 1.96125 1.22530 1.01908 0.95065 0.96282 1.22914 0.99809 0.96792 0.89607 1.64606 1.48670 1.06968 1.01209 1.22371 0.95522 0.99787 0.93095 1.20125 0.83751 0.79877 0.86712 1.90672 1.26488 1.40234 1.81443 1.47881 1.25345 1.50529 1.08718 1.19720 0.97348 0.97706 0.75641 1.21283 1.30559 1.10045 0.95186 0.90755 1.24850 0.95323 0.95033 0.97674 1.69890 1.43563 1.26638 1.13206 0.86874 0.81579 0.81446 0.79896 1.19865 1.18995 1.21151 1.21347 0.89370 0.87991 1.02321 1.19892 0.89847 0.95177 1.04257 1.29081 0.94530 0.93635 0.93060 1.81244 1.11157 1.09883 1.09651 1.23482 1.01107 0.86740 0.96794 0.89165 0.91099 0.91902 0.90477 0.89329 0.93053 0.89416 0.91838 0.87763 0.95017 0.94172 0.92487 0.90462 0.88463 0.86596 0.87448 0.86033 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.23 37.16 0.31 -1.05 16 2 C -0.11 -1.25 0.48 -152.65 -0.07 -1.33 16 3 C 0.46 5.69 2.25 37.16 0.08 5.77 16 4 F -0.18 -2.14 16.78 2.25 0.04 -2.11 16 5 F -0.18 -2.51 16.67 2.25 0.04 -2.47 16 6 F -0.18 -2.41 15.79 2.25 0.04 -2.38 16 7 C -0.12 -1.03 5.82 -25.38 -0.15 -1.18 16 8 C 0.04 0.32 6.70 -2.75 -0.02 0.30 16 9 N -0.49 -5.88 5.02 -231.89 -1.16 -7.05 16 10 C 0.02 0.28 4.03 -4.98 -0.02 0.26 16 11 C 0.51 8.52 7.31 -10.99 -0.08 8.44 16 12 O -0.51 -10.78 13.87 5.55 0.08 -10.71 16 13 N -0.59 -9.86 2.46 -175.06 -0.43 -10.29 16 14 C 0.22 4.58 4.23 -5.19 -0.02 4.56 16 15 C -0.53 -14.05 9.94 -34.44 -0.34 -14.40 16 16 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 19 Si 0.88 20.32 27.46 -169.99 -4.67 15.65 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.27 -5.65 6.55 56.52 0.37 -5.28 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.12 1.39 5.19 -4.04 -0.02 1.37 16 24 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 25 C 0.22 2.34 15.43 -20.75 -0.32 2.02 16 26 N -0.44 -6.07 18.54 42.17 0.78 -5.29 16 27 C 0.05 0.64 4.34 -1.89 -0.01 0.63 16 28 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 30 H 0.06 0.53 7.97 -51.93 -0.41 0.12 16 31 H 0.08 0.65 7.35 -51.93 -0.38 0.27 16 32 H 0.09 0.62 7.87 -51.93 -0.41 0.21 16 33 H 0.05 0.40 7.68 -51.93 -0.40 0.00 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.68 6.92 -51.93 -0.36 0.32 16 36 H 0.10 0.91 7.41 -51.93 -0.38 0.53 16 37 H 0.03 0.63 7.14 -51.93 -0.37 0.26 16 38 H 0.04 0.92 6.84 -51.93 -0.36 0.57 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.08 0.77 6.28 -51.93 -0.33 0.44 16 41 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 42 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.11 0.72 7.41 -51.93 -0.38 0.33 16 44 H 0.12 2.07 6.34 -51.93 -0.33 1.74 16 45 H 0.05 0.80 7.24 -51.93 -0.38 0.42 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -33.09 379.80 -5.90 -38.99 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.17 Total: -1.00 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.94 Total: 6.71 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.04 Total: -48.42 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.11 Total: -6.95 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.09 -5.90 -38.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879999895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.129 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds