Wall clock time and date at job start Wed Apr 1 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 110.64642 * 2 1 4 4 F 1.39898 * 109.47061 * 298.29938 * 3 2 1 5 5 F 1.39906 * 109.47189 * 58.29552 * 3 2 1 6 6 F 1.39894 * 109.47338 * 178.29844 * 3 2 1 7 7 C 1.54591 * 110.72908 * 236.84557 * 2 1 3 8 8 C 1.53996 * 105.14129 * 263.60418 * 7 2 1 9 9 N 1.47903 * 107.05746 * 1.21952 * 8 7 2 10 10 C 1.46902 * 111.00174 * 214.15935 * 9 8 7 11 11 C 1.50693 * 109.47209 * 176.64276 * 10 9 8 12 12 O 1.21287 * 119.99909 * 6.03526 * 11 10 9 13 13 N 1.34773 * 120.00174 * 186.04008 * 11 10 9 14 14 C 1.46498 * 120.00412 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47239 * 270.00276 * 14 13 11 16 16 H 1.08001 * 119.99755 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00084 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99936 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99869 * 359.71631 * 17 15 14 20 20 H 1.48508 * 109.47350 * 270.27717 * 19 17 15 21 21 H 1.48492 * 109.47208 * 30.27975 * 19 17 15 22 22 H 1.48500 * 109.47010 * 150.28116 * 19 17 15 23 23 C 1.46501 * 119.99821 * 359.97438 * 13 11 10 24 24 C 1.53000 * 109.47323 * 270.00166 * 23 13 11 25 25 C 1.47198 * 109.47123 * 179.97438 * 24 23 13 26 26 N 8.88995 * 121.62192 * 160.63911 * 2 1 3 27 27 C 1.48538 * 105.82042 * 334.67509 * 9 8 7 28 28 H 1.09003 * 109.47204 * 181.69497 * 1 2 3 29 29 H 1.08996 * 109.47485 * 301.69985 * 1 2 3 30 30 H 1.09003 * 109.46917 * 61.70461 * 1 2 3 31 31 H 1.08999 * 110.31188 * 144.68465 * 7 2 1 32 32 H 1.09007 * 110.39201 * 22.56103 * 7 2 1 33 33 H 1.09002 * 109.91693 * 241.87213 * 8 7 2 34 34 H 1.08998 * 109.91815 * 120.57617 * 8 7 2 35 35 H 1.08995 * 109.47077 * 56.63607 * 10 9 8 36 36 H 1.09006 * 109.46783 * 296.63790 * 10 9 8 37 37 H 1.08999 * 109.47735 * 150.00022 * 14 13 11 38 38 H 1.09001 * 109.46892 * 29.99159 * 14 13 11 39 39 H 0.97007 * 120.00225 * 179.72081 * 18 17 15 40 40 H 1.08997 * 109.46923 * 30.00428 * 23 13 11 41 41 H 1.08998 * 109.46985 * 149.99859 * 23 13 11 42 42 H 1.09003 * 109.46526 * 300.00303 * 24 23 13 43 43 H 1.08997 * 109.46617 * 59.99754 * 24 23 13 44 44 H 1.08991 * 110.66721 * 157.64415 * 27 9 8 45 45 H 1.09005 * 110.66176 * 280.77029 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 9 1.6487 2.0886 -1.1613 5 9 1.5852 2.1126 1.1222 6 9 3.4675 1.4033 0.0392 7 6 2.0771 -0.7907 -1.2105 8 6 2.3744 -2.2012 -0.6684 9 7 1.9856 -2.2084 0.7586 10 6 2.8783 -3.0719 1.5431 11 6 2.5037 -2.9898 3.0004 12 8 1.5179 -2.3698 3.3391 13 7 3.2641 -3.6053 3.9274 14 6 2.9003 -3.5250 5.3442 15 6 3.5619 -2.3219 5.9654 16 1 4.1909 -1.6814 5.3649 17 6 3.3652 -2.0395 7.3005 18 7 3.9430 -0.9899 7.8427 19 14 2.2720 -3.1437 8.3374 20 1 0.8720 -2.6522 8.2767 21 1 2.3324 -4.5321 7.8143 22 1 2.7427 -3.1244 9.7458 23 6 4.4546 -4.3547 3.5182 24 6 4.0706 -5.8090 3.2383 25 6 5.2667 -6.5618 2.8265 26 7 6.1911 -7.1419 2.5096 27 6 2.0782 -0.7965 1.2106 28 1 -0.3634 -1.0272 0.0304 29 1 -0.3634 0.5400 0.8743 30 1 -0.3633 0.4871 -0.9049 31 1 2.9912 -0.3281 -1.5827 32 1 1.3291 -0.8395 -2.0019 33 1 3.4380 -2.4194 -0.7646 34 1 1.7899 -2.9403 -1.2163 35 1 3.9090 -2.7421 1.4137 36 1 2.7807 -4.1021 1.2004 37 1 3.2330 -4.4277 5.8566 38 1 1.8181 -3.4326 5.4367 39 1 3.8013 -0.7889 8.7810 40 1 4.8720 -3.9088 2.6154 41 1 5.1965 -4.3219 4.3160 42 1 3.6532 -6.2547 4.1412 43 1 3.3286 -5.8417 2.4405 44 1 1.4575 -0.6332 2.0916 45 1 3.1142 -0.5245 1.4129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879999895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:20 Heat of formation + Delta-G solvation = -170.717561 kcal Electronic energy + Delta-G solvation = -31997.517933 eV Core-core repulsion = 27213.578449 eV Total energy + Delta-G solvation = -4783.939484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.19029 -48.68938 -48.64097 -41.20763 -39.78564 -37.93705 -36.66588 -35.02651 -34.61516 -32.32209 -31.06250 -30.05227 -28.24933 -27.58160 -25.91453 -25.20765 -23.95135 -22.21355 -21.34871 -19.85832 -19.43563 -19.27283 -19.16170 -18.55534 -18.44842 -17.81375 -17.11790 -16.62815 -16.23747 -15.95878 -15.73436 -15.69570 -15.47186 -15.37013 -15.12043 -15.01382 -14.86273 -14.82495 -14.74609 -14.52422 -14.36374 -14.20715 -13.74533 -13.71360 -13.54447 -13.48551 -13.29091 -13.12691 -13.02777 -12.84397 -12.64162 -12.40257 -12.26775 -12.06424 -11.97110 -11.94690 -11.80602 -11.78195 -11.67796 -10.76482 -10.48951 -9.45149 -9.38663 -8.27213 -6.31754 1.39041 1.43465 1.50466 1.65813 1.71344 1.87900 1.88126 2.24055 2.37146 2.64003 2.79028 2.93752 3.06660 3.11720 3.25626 3.58396 3.59578 3.78424 3.81128 4.03715 4.12958 4.19394 4.24740 4.33164 4.42659 4.55257 4.64557 4.70741 4.81309 4.84471 4.86352 4.88062 4.91000 5.02108 5.04165 5.12718 5.16170 5.27944 5.54187 5.64981 5.70299 5.92083 6.30504 6.64538 6.71409 6.74638 7.29543 7.51597 8.89811 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009111 B = 0.003772 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.570046 B = 7422.282366 C = 9492.671788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C 0.456 3.544 4 F -0.177 7.177 5 F -0.193 7.193 6 F -0.190 7.190 7 C -0.115 4.115 8 C 0.038 3.962 9 N -0.500 5.500 10 C 0.031 3.969 11 C 0.501 3.499 12 O -0.566 6.566 13 N -0.596 5.596 14 C 0.224 3.776 15 C -0.531 4.531 16 H 0.026 0.974 17 C 0.008 3.992 18 N -0.951 5.951 19 Si 0.944 3.056 20 H -0.279 1.279 21 H -0.225 1.225 22 H -0.285 1.285 23 C 0.111 3.889 24 C -0.036 4.036 25 C 0.245 3.755 26 N -0.493 5.493 27 C 0.048 3.952 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.149 0.851 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.265 0.735 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.143 0.857 44 H 0.078 0.922 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.365 -5.614 -21.221 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.110 4.110 3 C 0.401 3.599 4 F -0.159 7.159 5 F -0.175 7.175 6 F -0.171 7.171 7 C -0.153 4.153 8 C -0.089 4.089 9 N -0.224 5.224 10 C -0.099 4.099 11 C 0.289 3.711 12 O -0.444 6.444 13 N -0.328 5.328 14 C 0.102 3.898 15 C -0.570 4.570 16 H 0.045 0.955 17 C -0.189 4.189 18 N -0.592 5.592 19 Si 0.767 3.233 20 H -0.205 1.205 21 H -0.148 1.148 22 H -0.211 1.211 23 C -0.014 4.014 24 C -0.077 4.077 25 C -0.072 4.072 26 N -0.171 5.171 27 C -0.080 4.080 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.096 0.904 36 H 0.166 0.834 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.146 0.854 43 H 0.161 0.839 44 H 0.097 0.903 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.981 -6.266 -21.289 22.744 hybrid contribution 0.609 1.386 1.467 2.108 sum -4.372 -4.880 -19.822 20.877 Atomic orbital electron populations 1.21747 0.89025 1.04984 1.02885 1.22802 1.00429 0.87618 1.00165 1.20731 0.75360 0.90617 0.73159 1.93162 1.89797 1.83599 1.49313 1.93178 1.87920 1.82794 1.53604 1.93146 1.30895 1.96916 1.96146 1.22610 1.02695 0.94499 0.95475 1.23062 1.01299 0.97322 0.87215 1.64590 1.49352 1.05407 1.03066 1.22439 0.95961 1.02236 0.89308 1.21088 0.82814 0.78398 0.88780 1.90661 1.28928 1.42178 1.82632 1.47842 1.26725 1.51200 1.06985 1.19370 0.95824 0.96072 0.78543 1.21621 1.29387 1.11031 0.94921 0.95536 1.25860 0.97003 0.96670 0.99412 1.70071 1.46124 1.29340 1.13644 0.85769 0.78490 0.81258 0.77750 1.20480 1.14776 1.21131 1.21533 0.87279 0.89791 1.02756 1.19860 0.89470 0.92253 1.06095 1.29239 0.93918 0.92552 0.91510 1.81293 1.12601 1.11571 1.11633 1.23205 0.99139 0.89009 0.96627 0.88876 0.93011 0.89777 0.90094 0.86874 0.91517 0.86854 0.90392 0.83360 0.92296 0.95635 0.92617 0.88119 0.90096 0.85434 0.83945 0.90330 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.23 71.98 0.59 -1.92 16 2 C -0.11 -2.31 0.48 -50.98 -0.02 -2.34 16 3 C 0.46 11.29 2.25 71.98 0.16 11.45 16 4 F -0.18 -3.93 16.78 44.97 0.75 -3.18 16 5 F -0.19 -5.80 16.67 44.97 0.75 -5.05 16 6 F -0.19 -5.03 15.79 44.97 0.71 -4.32 16 7 C -0.12 -1.63 5.82 31.47 0.18 -1.44 16 8 C 0.04 0.50 6.70 86.45 0.58 1.08 16 9 N -0.50 -10.90 5.02 -887.56 -4.46 -15.36 16 10 C 0.03 0.64 4.03 85.55 0.35 0.98 16 11 C 0.50 16.31 7.31 87.66 0.64 16.95 16 12 O -0.57 -24.37 13.87 -3.05 -0.04 -24.42 16 13 N -0.60 -19.07 2.46 -826.16 -2.03 -21.10 16 14 C 0.22 9.36 4.23 85.64 0.36 9.72 16 15 C -0.53 -28.99 9.94 25.60 0.25 -28.74 16 16 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 17 C 0.01 0.45 5.47 84.65 0.46 0.91 16 18 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 19 Si 0.94 42.05 27.46 68.60 1.88 43.93 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.23 -8.50 6.55 99.48 0.65 -7.85 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 C 0.11 2.37 5.19 86.38 0.45 2.82 16 24 C -0.04 -0.48 6.03 28.79 0.17 -0.31 16 25 C 0.25 4.52 15.43 89.44 1.38 5.90 16 26 N -0.49 -12.47 18.54 20.01 0.37 -12.10 16 27 C 0.05 1.36 4.34 86.65 0.38 1.73 16 28 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 29 H 0.05 1.19 7.79 -2.39 -0.02 1.17 16 30 H 0.08 1.26 7.97 -2.39 -0.02 1.24 16 31 H 0.08 1.12 7.35 -2.39 -0.02 1.10 16 32 H 0.11 1.09 7.87 -2.38 -0.02 1.07 16 33 H 0.07 0.73 7.68 -2.39 -0.02 0.71 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.42 6.92 -2.39 -0.02 1.40 16 36 H 0.15 1.75 7.41 -2.38 -0.02 1.73 16 37 H 0.06 2.16 7.14 -2.39 -0.02 2.14 16 38 H 0.03 1.16 6.84 -2.39 -0.02 1.14 16 39 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 40 H 0.10 1.68 6.28 -2.39 -0.01 1.67 16 41 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 42 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.14 1.04 7.41 -2.39 -0.02 1.02 16 44 H 0.08 2.89 6.34 -2.39 -0.02 2.87 16 45 H 0.04 1.10 7.24 -2.38 -0.02 1.08 16 Total: -1.00 -79.46 379.80 5.14 -74.31 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.97 Total: 9.26 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 5.94 Total: 16.81 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -5.82 Total: -107.35 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.04 Total: -24.42 kcal Atomic # 9 Polarization: -14.76 SS G_CDS: 2.21 Total: -12.55 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.88 Total: 43.93 kcal Total: -79.46 5.14 -74.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879999895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.403 kcal (2) G-P(sol) polarization free energy of solvation -79.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds