Wall clock time and date at job start Wed Apr 1 2020 05:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00319 * 2 1 4 4 O 1.20829 * 119.99594 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00175 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.49914 * 300.06756 * 5 3 2 7 7 C 1.53043 * 109.49555 * 179.97438 * 5 3 2 8 8 C 1.53033 * 109.53724 * 178.68350 * 7 5 3 9 9 C 1.53198 * 109.31222 * 61.36632 * 8 7 5 10 10 N 1.46923 * 108.77591 * 305.36453 * 9 8 7 11 11 C 1.34774 * 120.63431 * 233.58523 * 10 9 8 12 12 O 1.21570 * 120.00563 * 185.69592 * 11 10 9 13 13 N 1.34786 * 119.99713 * 5.69220 * 11 10 9 14 14 C 1.39246 * 120.00000 * 185.72421 * 13 11 10 15 15 C 1.39688 * 119.57462 * 337.97856 * 14 13 11 16 16 C 1.38638 * 119.49570 * 180.02562 * 15 14 13 17 17 C 1.38358 * 118.66825 * 359.97438 * 16 15 14 18 18 C 1.40568 * 119.13501 * 0.02562 * 17 16 15 19 19 C 1.41334 * 119.78966 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99778 * 0.02600 * 19 18 17 21 21 C 1.40024 * 119.99617 * 180.02562 * 19 18 17 22 22 N 1.30741 * 120.00496 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99491 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47101 * 90.00329 * 23 21 19 25 25 H 1.48501 * 109.47034 * 209.99663 * 23 21 19 26 26 H 1.48495 * 109.47600 * 330.00047 * 23 21 19 27 27 N 1.31901 * 119.57578 * 157.97857 * 14 13 11 28 28 C 1.46929 * 118.73770 * 53.85669 * 10 9 8 29 29 H 1.09008 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47145 * 299.99871 * 1 2 3 31 31 H 1.08997 * 109.46819 * 60.00277 * 1 2 3 32 32 H 1.09011 * 109.47067 * 299.93277 * 6 5 3 33 33 H 1.08996 * 109.47307 * 59.93116 * 6 5 3 34 34 H 1.08999 * 109.47027 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.45890 * 58.66385 * 7 5 3 36 36 H 1.09002 * 109.44721 * 298.69887 * 7 5 3 37 37 H 1.09003 * 109.49909 * 301.41582 * 8 7 5 38 38 H 1.08996 * 109.52780 * 181.33196 * 8 7 5 39 39 H 1.08994 * 109.58870 * 185.57509 * 9 8 7 40 40 H 1.09002 * 109.58519 * 65.15137 * 9 8 7 41 41 H 0.96998 * 119.99747 * 5.72805 * 13 11 10 42 42 H 1.08001 * 120.25350 * 0.02736 * 15 14 13 43 43 H 1.07994 * 120.66841 * 179.97438 * 16 15 14 44 44 H 1.08000 * 120.43146 * 179.97438 * 17 16 15 45 45 H 0.97001 * 120.00224 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.58208 * 65.92908 * 28 10 9 47 47 H 1.09001 * 109.58795 * 186.35281 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.1136 0.5802 1.2491 7 6 4.0009 2.7422 -0.0002 8 6 5.5287 2.8235 0.0335 9 6 6.0997 2.1495 -1.2181 10 7 5.5700 0.7817 -1.3020 11 6 6.4027 -0.2710 -1.4235 12 8 5.9512 -1.3865 -1.5960 13 7 7.7361 -0.0870 -1.3539 14 6 8.5995 -1.1519 -1.5977 15 6 8.1355 -2.4619 -1.4569 16 6 8.9967 -3.5210 -1.6995 17 6 10.2988 -3.2445 -2.0769 18 6 10.7055 -1.9048 -2.2013 19 6 12.0326 -1.6066 -2.5855 20 1 12.7303 -2.4069 -2.7828 21 6 12.4425 -0.2735 -2.7102 22 7 11.5977 0.6953 -2.4718 23 14 14.1967 0.1205 -3.2172 24 1 14.2742 0.2183 -4.6970 25 1 14.6078 1.4136 -2.6137 26 1 15.1027 -0.9568 -2.7442 27 7 9.8451 -0.9107 -1.9586 28 6 4.1148 0.5837 -1.2570 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.7248 1.0742 2.1396 33 1 3.8038 -0.4648 1.2488 34 1 5.2021 0.6371 1.2488 35 1 3.5912 3.2428 0.8771 36 1 3.6311 3.2298 -0.9022 37 1 5.9007 2.3143 0.9227 38 1 5.8376 3.8686 0.0569 39 1 7.1871 2.1168 -1.1517 40 1 5.8025 2.7115 -2.1036 41 1 8.0942 0.7872 -1.1340 42 1 7.1136 -2.6484 -1.1614 43 1 8.6580 -4.5412 -1.5960 44 1 10.9938 -4.0477 -2.2726 45 1 11.8818 1.6188 -2.5578 46 1 3.6590 1.0206 -2.1456 47 1 3.8921 -0.4825 -1.2162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:46 Heat of formation + Delta-G solvation = -56.866654 kcal Electronic energy + Delta-G solvation = -31150.496197 eV Core-core repulsion = 26913.350400 eV Total energy + Delta-G solvation = -4237.145798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32334 -40.25359 -38.53770 -37.43875 -36.61071 -34.47434 -33.84593 -33.02344 -31.99912 -30.36937 -29.17216 -28.06081 -27.34143 -25.81744 -25.17794 -24.20960 -22.25646 -21.59004 -21.53484 -19.86179 -18.95377 -18.24600 -17.62988 -17.42163 -16.96184 -16.61094 -16.23023 -15.34544 -15.31645 -14.87814 -14.73436 -14.54500 -14.34864 -14.07442 -13.89650 -13.56920 -13.47228 -13.27223 -12.91542 -12.83950 -12.70837 -12.23728 -12.21381 -11.98844 -11.95811 -11.55971 -11.33123 -11.25556 -11.18502 -11.06734 -11.02376 -10.87986 -10.76883 -10.64137 -10.50146 -10.09894 -9.84559 -9.24156 -9.01745 -8.63963 -8.00945 -7.66166 -7.07620 -6.40348 -4.48964 1.88604 2.36764 2.67881 2.81653 2.95991 3.08658 3.12025 3.26307 3.62542 3.95261 4.08109 4.22702 4.41403 4.47362 4.68820 4.78814 4.80723 4.84030 4.84927 4.90328 5.17548 5.24063 5.32496 5.44635 5.50508 5.54094 5.61955 5.64504 5.68574 5.85266 5.89247 5.92529 6.09298 6.13963 6.17702 6.38719 6.45696 6.74832 6.82957 6.98008 7.04029 7.19627 7.46195 7.52239 7.61411 7.92696 8.05271 8.17938 8.40037 8.71225 8.88523 9.03306 10.06493 10.32155 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.002589 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.628941 B =10813.542772 C =11936.201311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.476 3.524 4 O -0.506 6.506 5 C -0.067 4.067 6 C -0.139 4.139 7 C -0.097 4.097 8 C -0.137 4.137 9 C 0.105 3.895 10 N -0.627 5.627 11 C 0.713 3.287 12 O -0.564 6.564 13 N -0.657 5.657 14 C 0.370 3.630 15 C -0.312 4.312 16 C -0.051 4.051 17 C -0.290 4.290 18 C 0.280 3.720 19 C -0.436 4.436 20 H 0.085 0.915 21 C 0.072 3.928 22 N -0.724 5.724 23 Si 0.906 3.094 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.262 1.262 27 N -0.508 5.508 28 C 0.147 3.853 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.402 0.598 42 H 0.140 0.860 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.269 0.731 46 H 0.069 0.931 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.842 6.329 5.810 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.268 6.268 3 C 0.318 3.682 4 O -0.393 6.393 5 C -0.069 4.069 6 C -0.196 4.196 7 C -0.135 4.135 8 C -0.175 4.175 9 C -0.018 4.018 10 N -0.366 5.366 11 C 0.414 3.586 12 O -0.441 6.441 13 N -0.306 5.306 14 C 0.135 3.865 15 C -0.337 4.337 16 C -0.076 4.076 17 C -0.313 4.313 18 C 0.153 3.847 19 C -0.468 4.468 20 H 0.103 0.897 21 C -0.152 4.152 22 N -0.346 5.346 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.186 1.186 27 N -0.226 5.226 28 C 0.023 3.977 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.240 0.760 42 H 0.157 0.843 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.129 6.905 5.580 18.411 hybrid contribution 0.430 0.046 -0.105 0.445 sum -15.699 6.952 5.475 18.021 Atomic orbital electron populations 1.23294 0.76340 1.03877 1.02442 1.86558 1.23357 1.33177 1.83662 1.23578 0.91460 0.81356 0.71818 1.90655 1.67001 1.36414 1.45239 1.21071 0.86667 0.99362 0.99836 1.21864 1.02659 1.00905 0.94215 1.21454 0.95838 0.92387 1.03829 1.22026 0.94857 1.01717 0.98882 1.21747 0.99346 0.82451 0.98280 1.47168 1.05423 1.05491 1.78491 1.15632 0.81004 0.83950 0.77969 1.90797 1.75715 1.21573 1.55992 1.42412 1.03558 1.13634 1.70975 1.18240 0.89398 0.84434 0.94461 1.21840 1.02521 0.91355 1.17989 1.20835 0.93414 0.97079 0.96227 1.21714 0.96580 0.97341 1.15636 1.18158 0.92051 0.86019 0.88481 1.19545 0.94836 0.92617 1.39807 0.89738 1.26021 0.98946 0.96406 0.93873 1.70117 1.34304 0.99880 1.30324 0.86353 0.82512 0.78624 0.79438 1.19518 1.20249 1.18590 1.68005 1.00165 1.35138 1.19339 1.21402 0.79269 1.02883 0.94176 0.87925 0.91963 0.91860 0.92161 0.90932 0.90298 0.90652 0.90720 0.90562 0.89807 0.89453 0.90901 0.76002 0.84315 0.88391 0.88314 0.91943 0.91268 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.71 10.40 -39.26 -0.41 -4.12 16 3 C 0.48 5.36 6.55 36.01 0.24 5.60 16 4 O -0.51 -6.60 15.73 -18.75 -0.29 -6.90 16 5 C -0.07 -0.70 0.71 -155.32 -0.11 -0.81 16 6 C -0.14 -1.42 7.93 37.15 0.29 -1.12 16 7 C -0.10 -0.89 4.00 -26.69 -0.11 -1.00 16 8 C -0.14 -1.16 5.74 -26.61 -0.15 -1.31 16 9 C 0.11 1.11 6.43 -3.71 -0.02 1.09 16 10 N -0.63 -8.48 2.40 -178.23 -0.43 -8.91 16 11 C 0.71 13.05 8.20 -86.91 -0.71 12.34 16 12 O -0.56 -12.04 12.45 5.30 0.07 -11.98 16 13 N -0.66 -13.13 5.30 -15.78 -0.08 -13.21 16 14 C 0.37 9.11 7.50 -155.00 -1.16 7.95 16 15 C -0.31 -7.63 8.90 -38.89 -0.35 -7.98 16 16 C -0.05 -1.21 10.15 -39.39 -0.40 -1.61 16 17 C -0.29 -7.29 9.83 -38.66 -0.38 -7.67 16 18 C 0.28 7.67 6.55 -85.00 -0.56 7.12 16 19 C -0.44 -11.58 9.14 -37.74 -0.34 -11.92 16 20 H 0.08 2.11 7.85 -52.49 -0.41 1.69 16 21 C 0.07 1.79 5.50 -17.35 -0.10 1.70 16 22 N -0.72 -18.56 11.46 55.55 0.64 -17.92 16 23 Si 0.91 18.33 29.56 -169.99 -5.02 13.30 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 27 N -0.51 -13.74 7.89 -10.26 -0.08 -13.82 16 28 C 0.15 1.77 5.07 -3.49 -0.02 1.75 16 29 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 31 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.07 0.79 8.11 -51.93 -0.42 0.36 16 34 H 0.08 0.87 5.97 -51.93 -0.31 0.56 16 35 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 36 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 37 H 0.08 0.67 6.34 -51.93 -0.33 0.34 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.97 5.59 -51.93 -0.29 0.68 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.40 7.21 6.33 -40.82 -0.26 6.95 16 42 H 0.14 3.36 5.18 -52.85 -0.27 3.09 16 43 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 45 H 0.27 6.24 8.29 -40.82 -0.34 5.90 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.11 1.49 7.04 -51.93 -0.37 1.12 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -32.47 379.25 -9.16 -41.63 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.44 Total: 10.77 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -2.81 Total: 5.45 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.04 Total: -53.87 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.64 Total: -23.00 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.47 -9.16 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.237 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds