Wall clock time and date at job start Wed Apr 1 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00319 * 2 1 4 4 O 1.20829 * 119.99594 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00175 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.49914 * 300.06756 * 5 3 2 7 7 C 1.53043 * 109.49555 * 179.97438 * 5 3 2 8 8 C 1.53033 * 109.53724 * 178.68350 * 7 5 3 9 9 C 1.53198 * 109.31222 * 61.36632 * 8 7 5 10 10 N 1.46923 * 108.77591 * 305.36453 * 9 8 7 11 11 C 1.34774 * 120.63431 * 233.58523 * 10 9 8 12 12 O 1.21570 * 120.00563 * 185.69592 * 11 10 9 13 13 N 1.34786 * 119.99713 * 5.69220 * 11 10 9 14 14 C 1.39246 * 120.00000 * 185.72421 * 13 11 10 15 15 C 1.39688 * 119.57462 * 337.97856 * 14 13 11 16 16 C 1.38638 * 119.49570 * 180.02562 * 15 14 13 17 17 C 1.38358 * 118.66825 * 359.97438 * 16 15 14 18 18 C 1.40568 * 119.13501 * 0.02562 * 17 16 15 19 19 C 1.41334 * 119.78966 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99778 * 0.02600 * 19 18 17 21 21 C 1.40024 * 119.99617 * 180.02562 * 19 18 17 22 22 N 1.30741 * 120.00496 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99491 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47101 * 90.00329 * 23 21 19 25 25 H 1.48501 * 109.47034 * 209.99663 * 23 21 19 26 26 H 1.48495 * 109.47600 * 330.00047 * 23 21 19 27 27 N 1.31901 * 119.57578 * 157.97857 * 14 13 11 28 28 C 1.46929 * 118.73770 * 53.85669 * 10 9 8 29 29 H 1.09008 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47145 * 299.99871 * 1 2 3 31 31 H 1.08997 * 109.46819 * 60.00277 * 1 2 3 32 32 H 1.09011 * 109.47067 * 299.93277 * 6 5 3 33 33 H 1.08996 * 109.47307 * 59.93116 * 6 5 3 34 34 H 1.08999 * 109.47027 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.45890 * 58.66385 * 7 5 3 36 36 H 1.09002 * 109.44721 * 298.69887 * 7 5 3 37 37 H 1.09003 * 109.49909 * 301.41582 * 8 7 5 38 38 H 1.08996 * 109.52780 * 181.33196 * 8 7 5 39 39 H 1.08994 * 109.58870 * 185.57509 * 9 8 7 40 40 H 1.09002 * 109.58519 * 65.15137 * 9 8 7 41 41 H 0.96998 * 119.99747 * 5.72805 * 13 11 10 42 42 H 1.08001 * 120.25350 * 0.02736 * 15 14 13 43 43 H 1.07994 * 120.66841 * 179.97438 * 16 15 14 44 44 H 1.08000 * 120.43146 * 179.97438 * 17 16 15 45 45 H 0.97001 * 120.00224 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.58208 * 65.92908 * 28 10 9 47 47 H 1.09001 * 109.58795 * 186.35281 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.1136 0.5802 1.2491 7 6 4.0009 2.7422 -0.0002 8 6 5.5287 2.8235 0.0335 9 6 6.0997 2.1495 -1.2181 10 7 5.5700 0.7817 -1.3020 11 6 6.4027 -0.2710 -1.4235 12 8 5.9512 -1.3865 -1.5960 13 7 7.7361 -0.0870 -1.3539 14 6 8.5995 -1.1519 -1.5977 15 6 8.1355 -2.4619 -1.4569 16 6 8.9967 -3.5210 -1.6995 17 6 10.2988 -3.2445 -2.0769 18 6 10.7055 -1.9048 -2.2013 19 6 12.0326 -1.6066 -2.5855 20 1 12.7303 -2.4069 -2.7828 21 6 12.4425 -0.2735 -2.7102 22 7 11.5977 0.6953 -2.4718 23 14 14.1967 0.1205 -3.2172 24 1 14.2742 0.2183 -4.6970 25 1 14.6078 1.4136 -2.6137 26 1 15.1027 -0.9568 -2.7442 27 7 9.8451 -0.9107 -1.9586 28 6 4.1148 0.5837 -1.2570 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.7248 1.0742 2.1396 33 1 3.8038 -0.4648 1.2488 34 1 5.2021 0.6371 1.2488 35 1 3.5912 3.2428 0.8771 36 1 3.6311 3.2298 -0.9022 37 1 5.9007 2.3143 0.9227 38 1 5.8376 3.8686 0.0569 39 1 7.1871 2.1168 -1.1517 40 1 5.8025 2.7115 -2.1036 41 1 8.0942 0.7872 -1.1340 42 1 7.1136 -2.6484 -1.1614 43 1 8.6580 -4.5412 -1.5960 44 1 10.9938 -4.0477 -2.2726 45 1 11.8818 1.6188 -2.5578 46 1 3.6590 1.0206 -2.1456 47 1 3.8921 -0.4825 -1.2162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:45 Heat of formation + Delta-G solvation = -74.665016 kcal Electronic energy + Delta-G solvation = -31151.267992 eV Core-core repulsion = 26913.350400 eV Total energy + Delta-G solvation = -4237.917593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.33616 -41.52117 -40.01015 -38.82640 -37.52916 -36.09486 -35.34223 -34.51854 -32.90049 -32.27420 -30.98045 -28.72895 -28.29077 -27.44375 -26.50902 -25.11971 -23.54653 -23.44483 -22.80227 -21.21536 -20.12586 -19.41092 -19.23864 -18.55182 -18.10817 -17.65037 -17.45673 -16.85614 -16.64869 -16.30335 -16.13913 -15.76713 -15.71635 -15.22274 -15.00581 -14.76105 -14.64669 -14.55451 -14.21321 -13.97684 -13.79982 -13.72401 -13.50113 -12.94468 -12.89134 -12.87103 -12.83153 -12.64755 -12.55956 -12.40417 -12.06728 -12.00007 -11.82178 -11.80881 -11.58491 -11.57631 -11.40299 -11.02659 -10.68920 -9.95764 -9.79922 -9.59149 -8.91911 -8.27328 -6.47069 0.83331 0.98973 1.15538 1.40307 1.44762 1.55936 1.58994 1.71545 2.09731 2.26539 2.77442 2.91198 3.37456 3.51907 3.62618 3.87595 3.94778 3.99434 4.02102 4.27808 4.31810 4.32988 4.39221 4.42349 4.57428 4.60453 4.66633 4.67439 4.71786 4.75672 4.84873 4.90611 4.94277 5.00274 5.04798 5.07006 5.10599 5.27009 5.29351 5.37269 5.44750 5.60670 5.71635 5.80010 6.02747 6.20026 6.32146 6.61213 6.73461 6.85820 7.01539 7.46632 8.13602 8.48102 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.002589 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.628941 B =10813.542772 C =11936.201311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.479 3.521 4 O -0.524 6.524 5 C -0.061 4.061 6 C -0.136 4.136 7 C -0.093 4.093 8 C -0.127 4.127 9 C 0.098 3.902 10 N -0.614 5.614 11 C 0.711 3.289 12 O -0.598 6.598 13 N -0.654 5.654 14 C 0.363 3.637 15 C -0.326 4.326 16 C -0.049 4.049 17 C -0.309 4.309 18 C 0.245 3.755 19 C -0.466 4.466 20 H 0.090 0.910 21 C 0.027 3.973 22 N -0.752 5.752 23 Si 0.987 3.013 24 H -0.266 1.266 25 H -0.267 1.267 26 H -0.258 1.258 27 N -0.532 5.532 28 C 0.146 3.854 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.411 0.589 42 H 0.141 0.859 43 H 0.129 0.871 44 H 0.112 0.888 45 H 0.279 0.721 46 H 0.082 0.918 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 7.764 6.011 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.322 3.678 4 O -0.413 6.413 5 C -0.063 4.063 6 C -0.193 4.193 7 C -0.131 4.131 8 C -0.165 4.165 9 C -0.024 4.024 10 N -0.351 5.351 11 C 0.413 3.587 12 O -0.477 6.477 13 N -0.303 5.303 14 C 0.127 3.873 15 C -0.351 4.351 16 C -0.074 4.074 17 C -0.332 4.332 18 C 0.119 3.881 19 C -0.498 4.498 20 H 0.108 0.892 21 C -0.195 4.195 22 N -0.374 5.374 23 Si 0.807 3.193 24 H -0.191 1.191 25 H -0.191 1.191 26 H -0.181 1.181 27 N -0.252 5.252 28 C 0.023 3.977 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.250 0.750 42 H 0.159 0.841 43 H 0.147 0.853 44 H 0.130 0.870 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.297 8.375 5.800 19.219 hybrid contribution 0.301 -0.398 -0.151 0.521 sum -15.996 7.976 5.649 18.746 Atomic orbital electron populations 1.23577 0.74637 1.05683 1.02743 1.86553 1.25135 1.32852 1.83279 1.23616 0.91593 0.81278 0.71274 1.90646 1.67416 1.36961 1.46251 1.21032 0.86337 1.00196 0.98781 1.21826 1.02089 1.00509 0.94884 1.21456 0.96099 0.91183 1.04347 1.21988 0.94232 1.02900 0.97367 1.22029 0.99144 0.80829 1.00376 1.47149 1.05518 1.05584 1.76819 1.15744 0.80658 0.84549 0.77754 1.90753 1.76077 1.23385 1.57488 1.42304 1.03845 1.13070 1.71131 1.18553 0.89365 0.85844 0.93566 1.22052 1.02786 0.91797 1.18484 1.21186 0.92801 0.98536 0.94865 1.21885 0.97576 0.97078 1.16680 1.18671 0.92962 0.87207 0.89261 1.19916 0.95026 0.93984 1.40866 0.89186 1.26917 1.03522 0.95626 0.93417 1.70184 1.36492 1.00567 1.30153 0.85146 0.76514 0.78663 0.78972 1.19081 1.19101 1.18139 1.68035 1.01036 1.35508 1.20604 1.21482 0.78212 1.02249 0.95805 0.85487 0.91544 0.91691 0.90605 0.91977 0.91100 0.89914 0.90415 0.90788 0.87193 0.90038 0.89169 0.75000 0.84131 0.85316 0.87015 0.91028 0.89968 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -7.33 10.40 -51.43 -0.53 -7.86 16 3 C 0.48 10.23 6.55 71.24 0.47 10.70 16 4 O -0.52 -12.92 15.73 21.95 0.35 -12.58 16 5 C -0.06 -1.20 0.71 -52.71 -0.04 -1.23 16 6 C -0.14 -2.65 7.93 71.98 0.57 -2.08 16 7 C -0.09 -1.49 4.00 30.62 0.12 -1.36 16 8 C -0.13 -1.85 5.74 30.67 0.18 -1.67 16 9 C 0.10 1.92 6.43 86.37 0.56 2.48 16 10 N -0.61 -16.23 2.40 -836.07 -2.01 -18.24 16 11 C 0.71 26.30 8.20 179.05 1.47 27.77 16 12 O -0.60 -26.05 12.45 -3.94 -0.05 -26.09 16 13 N -0.65 -26.55 5.30 -322.12 -1.71 -28.26 16 14 C 0.36 18.29 7.50 133.26 1.00 19.29 16 15 C -0.33 -16.24 8.90 22.72 0.20 -16.04 16 16 C -0.05 -2.36 10.15 22.39 0.23 -2.13 16 17 C -0.31 -15.83 9.83 22.87 0.22 -15.61 16 18 C 0.25 13.81 6.55 40.19 0.26 14.07 16 19 C -0.47 -25.15 9.14 23.47 0.21 -24.94 16 20 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 21 C 0.03 1.35 5.50 85.29 0.47 1.82 16 22 N -0.75 -38.72 11.46 21.84 0.25 -38.47 16 23 Si 0.99 37.20 29.56 68.60 2.03 39.22 16 24 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 25 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 26 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 27 N -0.53 -29.52 7.89 -186.37 -1.47 -30.99 16 28 C 0.15 3.42 5.07 86.51 0.44 3.86 16 29 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 31 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 32 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 34 H 0.07 1.51 5.97 -2.39 -0.01 1.49 16 35 H 0.08 1.26 8.07 -2.39 -0.02 1.24 16 36 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 37 H 0.07 1.15 6.34 -2.39 -0.02 1.14 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.73 5.59 -2.39 -0.01 1.71 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.41 14.88 6.33 -92.71 -0.59 14.30 16 42 H 0.14 6.94 5.18 -8.69 -0.05 6.90 16 43 H 0.13 5.18 8.06 -2.91 -0.02 5.16 16 44 H 0.11 5.23 8.06 -2.91 -0.02 5.20 16 45 H 0.28 12.83 8.29 -92.71 -0.77 12.06 16 46 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.09 2.50 7.04 -2.39 -0.02 2.49 16 Total: -1.00 -71.24 379.25 4.81 -66.44 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: 0.40 Total: 40.36 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 7.56 Total: 16.47 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -4.94 Total: -115.96 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.24 Total: -46.54 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.22 kcal Total: -71.24 4.81 -66.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.228 kcal (2) G-P(sol) polarization free energy of solvation -71.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds