Wall clock time and date at job start Wed Apr 1 2020 05:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99845 * 2 1 4 4 C 1.53003 * 109.47252 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47139 * 184.99560 * 4 3 2 6 6 N 1.46500 * 109.46780 * 64.99875 * 4 3 2 7 7 C 1.34770 * 120.00063 * 85.00103 * 6 4 3 8 8 O 1.21603 * 120.00516 * 359.97438 * 7 6 4 9 9 C 1.47431 * 119.99929 * 179.97438 * 7 6 4 10 10 C 1.41293 * 126.41437 * 0.04241 * 9 7 6 11 11 N 1.30448 * 108.02361 * 179.70632 * 10 9 7 12 12 N 1.39944 * 108.89724 * 0.40720 * 11 10 9 13 13 C 1.46491 * 125.75406 * 179.85047 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.68786 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.34263 * 108.48668 * 359.58371 * 12 11 10 23 23 C 1.50701 * 126.28871 * 180.26134 * 22 12 11 24 24 C 1.50697 * 109.47086 * 304.99775 * 4 3 2 25 25 C 1.34517 * 125.79100 * 259.71782 * 24 4 3 26 26 C 1.41381 * 106.84029 * 179.89005 * 25 24 4 27 27 C 1.34515 * 106.84335 * 0.36731 * 26 25 24 28 28 C 1.50701 * 125.79176 * 179.75009 * 27 26 25 29 29 O 1.34305 * 108.41985 * 359.77447 * 27 26 25 30 30 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47255 * 299.99977 * 1 2 3 32 32 H 1.09000 * 109.46779 * 60.00550 * 1 2 3 33 33 H 1.08996 * 109.47355 * 59.99400 * 3 2 1 34 34 H 1.09001 * 109.46923 * 299.99730 * 3 2 1 35 35 H 0.97010 * 119.99367 * 264.99976 * 6 4 3 36 36 H 1.07998 * 125.98947 * 359.93069 * 10 9 7 37 37 H 1.09004 * 109.47166 * 149.69052 * 13 12 11 38 38 H 1.08994 * 109.47507 * 29.68759 * 13 12 11 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.46762 * 89.99560 * 23 22 12 41 41 H 1.08991 * 109.47344 * 210.00318 * 23 22 12 42 42 H 1.08999 * 109.47223 * 330.00739 * 23 22 12 43 43 H 1.07995 * 126.57670 * 0.02562 * 25 24 4 44 44 H 1.07993 * 126.58008 * 180.11660 * 26 25 24 45 45 H 1.08997 * 109.47109 * 180.02562 * 28 27 26 46 46 H 1.08995 * 109.47206 * 300.00197 * 28 27 26 47 47 H 1.09005 * 109.47040 * 60.00184 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9784 2.1766 0.0901 6 7 3.9767 0.5641 -1.2509 7 6 4.1662 1.3222 -2.3489 8 8 3.9707 2.5214 -2.3010 9 6 4.6108 0.6976 -3.6082 10 6 4.8761 -0.6746 -3.8159 11 7 5.2388 -0.8319 -5.0590 12 7 5.2321 0.4150 -5.6944 13 6 5.5822 0.6640 -7.0949 14 6 7.0571 0.9549 -7.1998 15 1 7.6723 0.9540 -6.3121 16 6 7.6225 1.2161 -8.4300 17 7 6.8735 1.2169 -9.5110 18 14 9.4521 1.5692 -8.5609 19 1 10.0659 1.5086 -7.2101 20 1 10.0900 0.5562 -9.4399 21 1 9.6552 2.9227 -9.1372 22 6 4.8449 1.3437 -4.8054 23 6 4.6934 2.8202 -5.0666 24 6 3.9715 0.3330 1.1649 25 6 4.4542 0.7878 2.3351 26 6 4.7313 -0.3464 3.1324 27 6 4.4090 -1.4268 2.3987 28 6 4.5417 -2.8622 2.8381 29 8 3.9493 -1.0092 1.2079 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 4.1323 -0.3927 -1.2892 36 1 4.7899 -1.4567 -3.0762 37 1 5.0160 1.5190 -7.4645 38 1 5.3422 -0.2160 -7.6914 39 1 7.2712 1.4010 -10.3764 40 1 3.6769 3.0275 -5.4012 41 1 4.8942 3.3739 -4.1496 42 1 5.3994 3.1269 -5.8384 43 1 4.5999 1.8211 2.6132 44 1 5.1295 -0.3457 4.1363 45 1 4.2053 -3.5200 2.0368 46 1 5.5851 -3.0763 3.0696 47 1 3.9311 -3.0284 3.7257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889324748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:05 Heat of formation + Delta-G solvation = -1.727839 kcal Electronic energy + Delta-G solvation = -30323.629852 eV Core-core repulsion = 26088.875053 eV Total energy + Delta-G solvation = -4234.754799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.75183 -40.77224 -39.16611 -37.79143 -35.04664 -33.89218 -33.31492 -32.35177 -31.91585 -31.15954 -29.96498 -27.37570 -26.99699 -26.56844 -25.77233 -23.67830 -22.96021 -21.90550 -21.66927 -20.24890 -19.73213 -19.08227 -17.62119 -16.89806 -16.71284 -16.53163 -16.43343 -15.76237 -15.54802 -15.13803 -15.05028 -14.67980 -14.45052 -14.09960 -13.90274 -13.53699 -13.37534 -13.28020 -13.06686 -12.92646 -12.77653 -12.57553 -12.53302 -12.38214 -12.28363 -12.04750 -11.93880 -11.75862 -11.46307 -11.44577 -11.09458 -10.91222 -10.36905 -10.17711 -10.01416 -9.90398 -9.86581 -9.43832 -9.08255 -8.71332 -8.56279 -8.44168 -7.90686 -6.33422 -4.41164 1.53245 2.17439 2.41631 2.68535 2.81797 3.16023 3.17372 3.25525 3.31743 3.50896 3.62307 3.91942 4.24911 4.29871 4.69067 4.82710 4.88671 4.99664 5.03517 5.06672 5.13106 5.18414 5.20529 5.21969 5.24731 5.34751 5.37621 5.45603 5.49040 5.62211 5.65292 5.77806 5.80829 5.95980 5.97763 6.10055 6.33247 6.41805 6.55434 6.60760 6.80226 6.90792 6.92822 7.07203 7.18131 7.57162 7.71471 7.77739 7.80648 8.39434 8.55471 8.65354 9.25909 10.74784 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.002416 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.577076 B =11587.816129 C =12273.628462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.240 3.760 5 H 0.129 0.871 6 N -0.723 5.723 7 C 0.608 3.392 8 O -0.558 6.558 9 C -0.332 4.332 10 C 0.060 3.940 11 N -0.295 5.295 12 N -0.314 5.314 13 C 0.251 3.749 14 C -0.540 4.540 15 H 0.066 0.934 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.908 3.092 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.167 3.833 23 C -0.097 4.097 24 C -0.009 4.009 25 C -0.200 4.200 26 C -0.215 4.215 27 C -0.011 4.011 28 C -0.074 4.074 29 O -0.156 6.156 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.406 0.594 36 H 0.175 0.825 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.873 -2.472 23.845 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C -0.030 4.030 4 C 0.135 3.865 5 H 0.147 0.853 6 N -0.376 5.376 7 C 0.400 3.600 8 O -0.438 6.438 9 C -0.347 4.347 10 C -0.127 4.127 11 N -0.115 5.115 12 N -0.091 5.091 13 C 0.134 3.866 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.205 1.205 22 C 0.029 3.971 23 C -0.156 4.156 24 C -0.060 4.060 25 C -0.219 4.219 26 C -0.234 4.234 27 C -0.061 4.061 28 C -0.130 4.130 29 O -0.052 6.052 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.241 0.759 36 H 0.192 0.808 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.575 -2.805 22.338 24.465 hybrid contribution 0.628 0.516 0.626 1.026 sum -8.947 -2.289 22.964 24.752 Atomic orbital electron populations 1.22716 0.81212 1.02644 0.99802 1.87940 1.19437 1.26964 1.95386 1.23070 0.92765 0.85687 1.01435 1.19455 0.92432 0.95347 0.79297 0.85348 1.45673 1.70693 1.12030 1.09162 1.17323 0.75025 0.85572 0.82107 1.90683 1.53573 1.14591 1.84947 1.19598 1.26346 0.94051 0.94750 1.23740 0.98989 0.95213 0.94736 1.77149 1.23083 1.03913 1.07381 1.49378 1.44785 1.02998 1.11917 1.19853 0.97414 0.98954 0.70428 1.21305 0.92212 1.50005 0.94288 0.91574 1.24930 0.99159 0.94522 0.95078 1.69927 1.36063 1.47917 0.98784 0.86272 0.83738 0.78070 0.78467 1.19498 1.20573 1.20543 1.21465 0.93259 0.93586 0.88755 1.20613 1.02810 0.87681 1.04451 1.22137 1.05002 0.80970 0.97848 1.21523 1.05948 1.00330 0.94141 1.21488 1.08706 0.91482 1.01774 1.22464 1.02150 0.97190 0.84340 1.20300 1.03305 0.87590 1.01848 1.83989 1.65139 1.21811 1.34267 0.89726 0.94368 0.94024 0.92281 0.91351 0.75903 0.80779 0.92561 0.92494 0.92170 0.90539 0.88593 0.89898 0.83390 0.83614 0.90450 0.89747 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.46 10.02 -35.23 -0.35 -4.81 16 3 C 0.05 0.53 5.73 37.16 0.21 0.74 16 4 C 0.24 2.82 2.83 -69.08 -0.20 2.63 16 5 H 0.13 1.47 7.57 -51.93 -0.39 1.07 16 6 N -0.72 -9.80 5.01 -56.01 -0.28 -10.08 16 7 C 0.61 10.15 7.78 -12.52 -0.10 10.05 16 8 O -0.56 -10.16 14.50 5.27 0.08 -10.09 16 9 C -0.33 -6.19 6.13 -105.06 -0.64 -6.83 16 10 C 0.06 1.09 11.50 -16.98 -0.20 0.90 16 11 N -0.30 -6.48 12.50 30.86 0.39 -6.10 16 12 N -0.31 -7.17 3.56 -57.78 -0.21 -7.38 16 13 C 0.25 6.27 5.78 -5.20 -0.03 6.24 16 14 C -0.54 -14.59 9.39 -34.44 -0.32 -14.91 16 15 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -24.63 13.29 55.43 0.74 -23.90 16 18 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.17 3.42 7.01 -81.60 -0.57 2.85 16 23 C -0.10 -1.75 9.34 36.01 0.34 -1.42 16 24 C -0.01 -0.10 5.67 -35.63 -0.20 -0.30 16 25 C -0.20 -2.08 10.80 -39.70 -0.43 -2.51 16 26 C -0.22 -2.10 10.81 -39.70 -0.43 -2.53 16 27 C -0.01 -0.11 7.32 -35.62 -0.26 -0.37 16 28 C -0.07 -0.47 10.42 36.01 0.38 -0.10 16 29 O -0.16 -1.89 10.18 5.69 0.06 -1.83 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.41 5.18 7.27 -40.82 -0.30 4.88 16 36 H 0.18 2.41 7.50 -52.49 -0.39 2.02 16 37 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 38 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.68 6.50 -51.93 -0.34 1.34 16 42 H 0.08 1.55 7.70 -51.93 -0.40 1.15 16 43 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 404.71 15.07 6.10 6.10 Total: -1.00 -32.10 404.71 -6.78 -38.88 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.83 Total: 5.80 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.44 Total: -2.45 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.64 Total: -47.45 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.22 Total: -16.73 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.10 -6.78 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889324748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.153 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds