Wall clock time and date at job start Wed Apr 1 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99845 * 2 1 4 4 C 1.53003 * 109.47252 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47139 * 184.99560 * 4 3 2 6 6 N 1.46500 * 109.46780 * 64.99875 * 4 3 2 7 7 C 1.34770 * 120.00063 * 85.00103 * 6 4 3 8 8 O 1.21603 * 120.00516 * 359.97438 * 7 6 4 9 9 C 1.47431 * 119.99929 * 179.97438 * 7 6 4 10 10 C 1.41293 * 126.41437 * 0.04241 * 9 7 6 11 11 N 1.30448 * 108.02361 * 179.70632 * 10 9 7 12 12 N 1.39944 * 108.89724 * 0.40720 * 11 10 9 13 13 C 1.46491 * 125.75406 * 179.85047 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.68786 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.34263 * 108.48668 * 359.58371 * 12 11 10 23 23 C 1.50701 * 126.28871 * 180.26134 * 22 12 11 24 24 C 1.50697 * 109.47086 * 304.99775 * 4 3 2 25 25 C 1.34517 * 125.79100 * 259.71782 * 24 4 3 26 26 C 1.41381 * 106.84029 * 179.89005 * 25 24 4 27 27 C 1.34515 * 106.84335 * 0.36731 * 26 25 24 28 28 C 1.50701 * 125.79176 * 179.75009 * 27 26 25 29 29 O 1.34305 * 108.41985 * 359.77447 * 27 26 25 30 30 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47255 * 299.99977 * 1 2 3 32 32 H 1.09000 * 109.46779 * 60.00550 * 1 2 3 33 33 H 1.08996 * 109.47355 * 59.99400 * 3 2 1 34 34 H 1.09001 * 109.46923 * 299.99730 * 3 2 1 35 35 H 0.97010 * 119.99367 * 264.99976 * 6 4 3 36 36 H 1.07998 * 125.98947 * 359.93069 * 10 9 7 37 37 H 1.09004 * 109.47166 * 149.69052 * 13 12 11 38 38 H 1.08994 * 109.47507 * 29.68759 * 13 12 11 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.46762 * 89.99560 * 23 22 12 41 41 H 1.08991 * 109.47344 * 210.00318 * 23 22 12 42 42 H 1.08999 * 109.47223 * 330.00739 * 23 22 12 43 43 H 1.07995 * 126.57670 * 0.02562 * 25 24 4 44 44 H 1.07993 * 126.58008 * 180.11660 * 26 25 24 45 45 H 1.08997 * 109.47109 * 180.02562 * 28 27 26 46 46 H 1.08995 * 109.47206 * 300.00197 * 28 27 26 47 47 H 1.09005 * 109.47040 * 60.00184 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.9784 2.1766 0.0901 6 7 3.9767 0.5641 -1.2509 7 6 4.1662 1.3222 -2.3489 8 8 3.9707 2.5214 -2.3010 9 6 4.6108 0.6976 -3.6082 10 6 4.8761 -0.6746 -3.8159 11 7 5.2388 -0.8319 -5.0590 12 7 5.2321 0.4150 -5.6944 13 6 5.5822 0.6640 -7.0949 14 6 7.0571 0.9549 -7.1998 15 1 7.6723 0.9540 -6.3121 16 6 7.6225 1.2161 -8.4300 17 7 6.8735 1.2169 -9.5110 18 14 9.4521 1.5692 -8.5609 19 1 10.0659 1.5086 -7.2101 20 1 10.0900 0.5562 -9.4399 21 1 9.6552 2.9227 -9.1372 22 6 4.8449 1.3437 -4.8054 23 6 4.6934 2.8202 -5.0666 24 6 3.9715 0.3330 1.1649 25 6 4.4542 0.7878 2.3351 26 6 4.7313 -0.3464 3.1324 27 6 4.4090 -1.4268 2.3987 28 6 4.5417 -2.8622 2.8381 29 8 3.9493 -1.0092 1.2079 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 4.1323 -0.3927 -1.2892 36 1 4.7899 -1.4567 -3.0762 37 1 5.0160 1.5190 -7.4645 38 1 5.3422 -0.2160 -7.6914 39 1 7.2712 1.4010 -10.3764 40 1 3.6769 3.0275 -5.4012 41 1 4.8942 3.3739 -4.1496 42 1 5.3994 3.1269 -5.8384 43 1 4.5999 1.8211 2.6132 44 1 5.1295 -0.3457 4.1363 45 1 4.2053 -3.5200 2.0368 46 1 5.5851 -3.0763 3.0696 47 1 3.9311 -3.0284 3.7257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889324748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:04 Heat of formation + Delta-G solvation = -22.248960 kcal Electronic energy + Delta-G solvation = -30324.519715 eV Core-core repulsion = 26088.875053 eV Total energy + Delta-G solvation = -4235.644662 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.52921 -42.32594 -40.38724 -38.74024 -36.12923 -35.80723 -34.07794 -33.90542 -33.03477 -32.63212 -30.94951 -29.05614 -28.17868 -27.70464 -26.51933 -25.43081 -24.20922 -22.90726 -22.69176 -21.29050 -20.92329 -20.55814 -18.90107 -18.78988 -17.91843 -17.47100 -17.29175 -16.81856 -16.56636 -16.47786 -16.32756 -16.09053 -15.83741 -15.42635 -15.16836 -14.82689 -14.33975 -14.21210 -14.07599 -13.97213 -13.75170 -13.66714 -13.63678 -13.61624 -13.53112 -13.28411 -13.08543 -13.03361 -12.95532 -12.72572 -12.61159 -12.33461 -12.20616 -11.84007 -11.74150 -10.91485 -10.76936 -10.76535 -10.62010 -10.27321 -10.23296 -9.47797 -9.19275 -8.38578 -6.54886 0.65590 0.75259 1.29533 1.36048 1.38362 1.49413 1.60705 1.71187 1.93876 2.27838 2.33157 2.49695 2.82342 2.93598 3.52342 3.71930 3.74447 3.94574 4.05386 4.12237 4.17459 4.21533 4.30348 4.38008 4.47160 4.53710 4.55632 4.58288 4.64346 4.67571 4.77754 4.79114 4.84442 4.88963 4.91316 4.91726 5.05805 5.11175 5.16021 5.28293 5.38220 5.49010 5.64063 5.68164 5.74249 6.04523 6.15534 6.29610 6.52191 6.54620 6.82276 7.16362 7.25972 8.69586 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.002416 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.577076 B =11587.816129 C =12273.628462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.052 3.948 4 C 0.240 3.760 5 H 0.131 0.869 6 N -0.710 5.710 7 C 0.612 3.388 8 O -0.574 6.574 9 C -0.331 4.331 10 C 0.078 3.922 11 N -0.335 5.335 12 N -0.338 5.338 13 C 0.267 3.733 14 C -0.555 4.555 15 H 0.051 0.949 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.972 3.028 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.267 1.267 22 C 0.150 3.850 23 C -0.090 4.090 24 C -0.029 4.029 25 C -0.200 4.200 26 C -0.226 4.226 27 C -0.019 4.019 28 C -0.074 4.074 29 O -0.175 6.175 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.411 0.589 36 H 0.217 0.783 37 H 0.052 0.948 38 H 0.031 0.969 39 H 0.274 0.726 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.652 -2.650 26.268 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.026 4.026 4 C 0.135 3.865 5 H 0.149 0.851 6 N -0.361 5.361 7 C 0.402 3.598 8 O -0.455 6.455 9 C -0.346 4.346 10 C -0.109 4.109 11 N -0.155 5.155 12 N -0.115 5.115 13 C 0.149 3.851 14 C -0.593 4.593 15 H 0.069 0.931 16 C -0.177 4.177 17 N -0.554 5.554 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.199 1.199 21 H -0.192 1.192 22 C 0.014 3.986 23 C -0.148 4.148 24 C -0.079 4.079 25 C -0.220 4.220 26 C -0.245 4.245 27 C -0.070 4.070 28 C -0.130 4.130 29 O -0.071 6.071 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.234 0.766 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.182 0.818 44 H 0.185 0.815 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.377 -2.992 24.796 26.678 hybrid contribution 0.475 0.511 0.040 0.699 sum -8.902 -2.481 24.835 26.499 Atomic orbital electron populations 1.22868 0.79872 1.03568 1.00504 1.87908 1.20978 1.27325 1.95523 1.23021 0.92130 0.85626 1.01789 1.19565 0.93085 0.95436 0.78397 0.85136 1.45558 1.69445 1.12051 1.09052 1.17044 0.75145 0.85387 0.82197 1.90673 1.54427 1.15230 1.85220 1.19891 1.25432 0.94258 0.95060 1.24399 0.96320 0.96074 0.94094 1.77099 1.25247 1.04059 1.09092 1.49130 1.46868 1.03968 1.11511 1.19380 0.96472 0.97399 0.71892 1.21424 0.93173 1.50666 0.94084 0.93063 1.25729 1.03432 0.93991 0.94581 1.70003 1.37880 1.48216 0.99320 0.85296 0.78415 0.78473 0.78245 1.19760 1.19872 1.19240 1.21984 0.93140 0.94362 0.89144 1.20606 1.03428 0.86444 1.04296 1.22076 1.06640 0.81065 0.98169 1.21857 1.04825 1.01487 0.93812 1.21824 1.08814 0.91102 1.02737 1.23199 1.01205 0.98885 0.83685 1.20470 1.04643 0.85442 1.02441 1.83969 1.65742 1.22042 1.35390 0.88769 0.92900 0.94065 0.90214 0.92621 0.75368 0.76639 0.93012 0.95071 0.91635 0.88924 0.87988 0.91114 0.81768 0.81517 0.90491 0.88281 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.40 -8.83 10.02 -148.98 -1.49 -10.32 16 3 C 0.05 1.07 5.73 71.98 0.41 1.49 16 4 C 0.24 5.32 2.83 44.25 0.13 5.44 16 5 H 0.13 2.82 7.57 -2.39 -0.02 2.80 16 6 N -0.71 -18.31 5.01 -449.38 -2.25 -20.56 16 7 C 0.61 19.83 7.78 86.67 0.67 20.50 16 8 O -0.57 -20.44 14.50 -4.04 -0.06 -20.50 16 9 C -0.33 -12.17 6.13 -20.15 -0.12 -12.29 16 10 C 0.08 2.76 11.50 85.65 0.99 3.75 16 11 N -0.34 -14.89 12.50 -56.27 -0.70 -15.59 16 12 N -0.34 -15.86 3.56 -336.71 -1.20 -17.06 16 13 C 0.27 13.92 5.78 85.64 0.50 14.42 16 14 C -0.56 -30.83 9.39 25.60 0.24 -30.59 16 15 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 16 C 0.02 1.31 5.46 84.66 0.46 1.77 16 17 N -0.92 -51.39 13.29 21.45 0.28 -51.11 16 18 Si 0.97 42.89 29.54 68.60 2.03 44.92 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 C 0.15 6.21 7.01 42.14 0.30 6.51 16 23 C -0.09 -3.26 9.34 71.24 0.67 -2.60 16 24 C -0.03 -0.63 5.67 24.83 0.14 -0.49 16 25 C -0.20 -3.77 10.80 22.19 0.24 -3.54 16 26 C -0.23 -3.88 10.81 22.19 0.24 -3.64 16 27 C -0.02 -0.35 7.32 24.83 0.18 -0.17 16 28 C -0.07 -0.77 10.42 71.24 0.74 -0.02 16 29 O -0.17 -3.96 10.18 -2.57 -0.03 -3.99 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 9.81 7.27 -92.70 -0.67 9.14 16 36 H 0.22 5.47 7.50 -2.91 -0.02 5.45 16 37 H 0.05 2.69 7.62 -2.38 -0.02 2.67 16 38 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 40 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.10 3.56 6.50 -2.39 -0.02 3.55 16 42 H 0.07 2.72 7.70 -2.39 -0.02 2.70 16 43 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 44 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -69.61 404.71 3.92 -65.69 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.32 Total: 26.27 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 7.02 Total: 2.23 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -3.87 Total: -104.31 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.58 Total: -34.81 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.61 3.92 -65.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889324748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.441 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds