Wall clock time and date at job start Wed Apr 1 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99777 * 2 1 4 4 C 1.53004 * 109.44835 * 60.03602 * 3 2 1 5 5 C 1.53040 * 109.45710 * 179.97438 * 3 2 1 6 6 C 1.53190 * 109.31349 * 58.65633 * 5 3 2 7 7 N 1.46918 * 108.77473 * 54.63574 * 6 5 3 8 8 C 1.34773 * 120.63182 * 126.36791 * 7 6 5 9 9 O 1.21362 * 119.99954 * 6.71377 * 8 7 6 10 10 C 1.49370 * 120.00398 * 186.70733 * 8 7 6 11 11 O 1.21361 * 119.99364 * 6.90570 * 10 8 7 12 12 N 1.34771 * 120.00456 * 186.90146 * 10 8 7 13 13 C 1.39110 * 120.00110 * 183.73493 * 12 10 8 14 14 C 1.39711 * 119.58190 * 339.50106 * 13 12 10 15 15 C 1.38650 * 119.49430 * 179.97438 * 14 13 12 16 16 C 1.38344 * 118.67266 * 0.02562 * 15 14 13 17 17 C 1.40602 * 119.13644 * 359.97438 * 16 15 14 18 18 C 1.41335 * 119.78509 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00037 * 5.29185 * 18 17 16 20 20 C 1.40027 * 119.99897 * 185.28326 * 18 17 16 21 21 N 1.30748 * 120.00059 * 211.65779 * 20 18 17 22 22 Si 1.86801 * 120.00119 * 31.66175 * 20 18 17 23 23 H 1.48499 * 109.46711 * 270.00028 * 22 20 18 24 24 H 1.48500 * 109.46773 * 29.99491 * 22 20 18 25 25 H 1.48495 * 109.47256 * 149.99410 * 22 20 18 26 26 N 1.31944 * 119.57579 * 159.74985 * 13 12 10 27 27 C 1.46932 * 118.73975 * 306.64142 * 7 6 5 28 28 C 1.52764 * 109.00521 * 53.31066 * 27 7 6 29 29 H 1.08998 * 109.47106 * 300.00222 * 1 2 3 30 30 H 1.08999 * 109.46901 * 59.99484 * 1 2 3 31 31 H 1.08994 * 109.47476 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47280 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47050 * 299.96113 * 4 3 2 34 34 H 1.08999 * 109.47198 * 59.96088 * 4 3 2 35 35 H 1.09005 * 109.49776 * 298.70309 * 5 3 2 36 36 H 1.09000 * 109.52534 * 178.63231 * 5 3 2 37 37 H 1.09001 * 109.58295 * 294.84771 * 6 5 3 38 38 H 1.08998 * 109.58612 * 174.42628 * 6 5 3 39 39 H 0.97000 * 120.00181 * 3.74404 * 12 10 8 40 40 H 1.08000 * 120.25010 * 359.97050 * 14 13 12 41 41 H 1.08003 * 120.66312 * 179.97438 * 15 14 13 42 42 H 1.08004 * 120.43237 * 180.02562 * 16 15 14 43 43 H 0.96996 * 120.00074 * 354.98995 * 21 20 18 44 44 H 1.08994 * 109.58452 * 173.14162 * 27 7 6 45 45 H 1.08996 * 109.58730 * 293.57183 * 27 7 6 46 46 H 1.08994 * 109.56151 * 185.55298 * 28 27 7 47 47 H 1.09000 * 109.38560 * 65.51317 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5591 2.0640 1.2499 5 6 3.5358 1.1844 0.0006 6 6 3.9819 0.3944 -1.2337 7 7 3.4282 1.0383 -2.4327 8 6 4.2323 1.3960 -3.4533 9 8 5.4038 1.0793 -3.4427 10 6 3.6817 2.1823 -4.5978 11 8 2.5456 2.6063 -4.5517 12 7 4.4466 2.4208 -5.6815 13 6 3.9617 3.2180 -6.7133 14 6 2.5846 3.4127 -6.8455 15 6 2.1033 4.2081 -7.8742 16 6 3.0092 4.7879 -8.7444 17 6 4.3831 4.5538 -8.5586 18 6 5.3205 5.1388 -9.4398 19 1 4.9885 5.8310 -10.1995 20 6 6.6796 4.8212 -9.3277 21 7 7.5865 5.7115 -9.6348 22 14 7.1971 3.1254 -8.7396 23 1 7.3323 3.1344 -7.2608 24 1 6.1701 2.1291 -9.1367 25 1 8.5002 2.7648 -9.3537 26 7 4.8080 3.7766 -7.5574 27 6 1.9820 1.2902 -2.4953 28 6 1.5577 2.0652 -1.2490 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.0026 3.0597 1.2505 33 1 0.4726 2.1504 1.2501 34 1 1.8807 1.5223 2.1394 35 1 3.8591 0.6638 0.9021 36 1 3.9803 2.1793 -0.0239 37 1 3.6132 -0.6291 -1.1653 38 1 5.0703 0.3899 -1.2910 39 1 5.3351 2.0365 -5.7422 40 1 1.9002 2.9472 -6.1518 41 1 1.0425 4.3711 -7.9943 42 1 2.6656 5.4129 -9.5554 43 1 7.3203 6.5659 -10.0089 44 1 1.7515 1.8767 -3.3846 45 1 1.4470 0.3413 -2.5319 46 1 0.4730 2.1715 -1.2371 47 1 2.0199 3.0522 -1.2619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890065761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:34 Heat of formation + Delta-G solvation = -59.345754 kcal Electronic energy + Delta-G solvation = -31153.500455 eV Core-core repulsion = 26916.247156 eV Total energy + Delta-G solvation = -4237.253300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.26697 -40.01680 -38.88509 -37.93561 -36.38608 -34.75265 -33.61303 -33.00654 -31.48327 -31.05673 -29.74950 -28.88420 -27.20652 -25.86604 -25.03571 -23.70958 -23.03320 -21.80526 -21.32999 -20.27397 -19.65430 -18.47123 -17.95817 -17.07888 -16.51144 -16.31713 -15.88174 -15.78557 -15.67938 -15.33842 -15.08333 -14.89274 -14.42505 -14.34938 -13.83786 -13.77561 -13.44161 -13.32388 -13.03687 -12.96368 -12.74537 -12.59429 -12.30021 -12.27276 -12.20470 -11.96906 -11.82592 -11.52523 -11.38142 -11.03348 -10.96008 -10.74104 -10.59274 -10.25645 -10.08804 -9.99545 -9.84731 -8.99976 -8.90943 -8.75823 -8.53455 -8.05450 -7.60296 -7.36288 -4.78766 1.27457 2.25968 2.53362 2.66479 3.27538 3.41637 3.44104 3.48694 3.54186 3.76296 4.25746 4.27638 4.35818 4.42980 4.47885 4.55034 4.82018 4.99250 5.03512 5.05982 5.13942 5.21841 5.27773 5.28918 5.42504 5.45036 5.45185 5.56608 5.64816 5.70103 5.77049 5.81035 5.82417 5.96585 6.12529 6.20886 6.38633 6.50367 6.58385 6.91006 6.97302 7.06084 7.13624 7.36957 7.40180 7.56020 7.72304 7.74407 8.02993 8.13622 8.30610 8.59145 9.43998 9.84446 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.002710 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.651661 B =10330.070652 C =11184.986292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.375 6.375 3 C 0.110 3.890 4 C -0.177 4.177 5 C -0.118 4.118 6 C 0.112 3.888 7 N -0.578 5.578 8 C 0.513 3.487 9 O -0.517 6.517 10 C 0.513 3.487 11 O -0.488 6.488 12 N -0.616 5.616 13 C 0.374 3.626 14 C -0.318 4.318 15 C -0.037 4.037 16 C -0.276 4.276 17 C 0.273 3.727 18 C -0.488 4.488 19 H 0.087 0.913 20 C 0.062 3.938 21 N -0.784 5.784 22 Si 1.118 2.882 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.312 1.312 26 N -0.595 5.595 27 C 0.052 3.948 28 C -0.155 4.155 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.419 0.581 40 H 0.144 0.856 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.288 0.712 44 H 0.160 0.840 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 -9.238 18.784 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.294 6.294 3 C 0.071 3.929 4 C -0.234 4.234 5 C -0.156 4.156 6 C -0.010 4.010 7 N -0.312 5.312 8 C 0.295 3.705 9 O -0.393 6.393 10 C 0.295 3.705 11 O -0.365 6.365 12 N -0.260 5.260 13 C 0.143 3.857 14 C -0.343 4.343 15 C -0.061 4.061 16 C -0.298 4.298 17 C 0.150 3.850 18 C -0.519 4.519 19 H 0.105 0.895 20 C -0.163 4.163 21 N -0.403 5.403 22 Si 0.947 3.053 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.242 1.242 26 N -0.318 5.318 27 C -0.068 4.068 28 C -0.193 4.193 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.257 0.743 40 H 0.161 0.839 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.176 0.824 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.123 -10.187 19.248 23.610 hybrid contribution -2.127 1.438 -0.401 2.598 sum -11.249 -8.748 18.847 23.628 Atomic orbital electron populations 1.22787 0.81582 1.02589 1.00273 1.87950 1.19440 1.27081 1.94969 1.21522 0.93697 0.83527 0.94143 1.22401 1.01946 1.01072 0.98020 1.21927 0.92922 1.01966 0.98751 1.21656 1.00244 0.96534 0.82558 1.47880 1.08759 1.57881 1.16636 1.19921 0.86188 0.80601 0.83833 1.90777 1.16278 1.53814 1.78441 1.20023 0.85783 0.81520 0.83192 1.90195 1.17374 1.50841 1.78059 1.42947 1.19953 1.46691 1.16424 1.18110 0.89548 0.90500 0.87563 1.21673 0.93631 1.12765 1.06213 1.20906 0.97923 0.94227 0.93019 1.21656 0.94008 1.10061 1.04076 1.18098 0.90968 0.87292 0.88644 1.20577 0.93358 1.23419 1.14508 0.89526 1.27550 0.92650 1.04987 0.91147 1.70623 1.38593 1.06308 1.24823 0.82654 0.73189 0.71964 0.77520 1.19954 1.20894 1.24250 1.66517 1.36852 1.18857 1.09614 1.23122 0.78448 1.02089 1.03191 1.22388 1.02021 1.00177 0.94720 0.93911 0.93575 0.89821 0.91350 0.92031 0.91701 0.89709 0.90003 0.90129 0.88749 0.74328 0.83929 0.87611 0.87723 0.90062 0.82397 0.91478 0.90233 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.21 101.05 1.03 1.20 16 2 O -0.38 -3.42 9.08 -35.23 -0.32 -3.74 16 3 C 0.11 0.93 0.71 -90.58 -0.06 0.87 16 4 C -0.18 -1.21 8.25 37.16 0.31 -0.91 16 5 C -0.12 -1.01 5.11 -26.61 -0.14 -1.15 16 6 C 0.11 1.18 6.18 -3.72 -0.02 1.16 16 7 N -0.58 -7.26 2.98 -173.58 -0.52 -7.78 16 8 C 0.51 7.90 7.74 -11.62 -0.09 7.81 16 9 O -0.52 -8.93 15.95 5.49 0.09 -8.84 16 10 C 0.51 8.81 7.67 -11.63 -0.09 8.72 16 11 O -0.49 -8.41 9.74 5.49 0.05 -8.36 16 12 N -0.62 -12.06 5.39 -11.83 -0.06 -12.13 16 13 C 0.37 8.56 7.51 -155.09 -1.16 7.39 16 14 C -0.32 -6.89 8.90 -38.88 -0.35 -7.23 16 15 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 16 C -0.28 -6.46 9.83 -38.65 -0.38 -6.84 16 17 C 0.27 7.12 6.24 -85.00 -0.53 6.59 16 18 C -0.49 -13.02 9.36 -37.73 -0.35 -13.38 16 19 H 0.09 2.29 8.06 -52.49 -0.42 1.86 16 20 C 0.06 1.65 5.43 -17.34 -0.09 1.56 16 21 N -0.78 -20.75 13.65 55.55 0.76 -19.99 16 22 Si 1.12 26.65 26.15 -169.99 -4.45 22.20 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.31 -7.19 7.11 56.52 0.40 -6.79 16 26 N -0.59 -15.14 6.19 -10.27 -0.06 -15.20 16 27 C 0.05 0.59 6.01 -3.93 -0.02 0.56 16 28 C -0.15 -1.43 4.46 -26.83 -0.12 -1.55 16 29 H 0.04 0.25 6.42 -51.93 -0.33 -0.08 16 30 H 0.05 0.30 6.44 -51.93 -0.33 -0.03 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.82 7.81 -51.93 -0.41 0.42 16 38 H 0.09 1.05 7.05 -51.93 -0.37 0.69 16 39 H 0.42 7.93 8.33 -40.82 -0.34 7.59 16 40 H 0.14 2.88 5.14 -49.22 -0.25 2.63 16 41 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 42 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 43 H 0.29 7.28 8.73 -40.82 -0.36 6.92 16 44 H 0.16 2.08 3.77 -52.96 -0.20 1.88 16 45 H 0.07 0.72 7.81 -51.93 -0.41 0.31 16 46 H 0.08 0.64 6.61 -51.93 -0.34 0.29 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -29.39 371.89 -7.66 -37.05 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.28 Total: 7.58 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.48 Total: 3.61 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.11 Total: -55.10 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.18 Total: -20.95 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -4.45 Total: 22.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.39 -7.66 -37.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890065761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.299 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds