Wall clock time and date at job start Wed Apr 1 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99777 * 2 1 4 4 C 1.53004 * 109.44835 * 60.03602 * 3 2 1 5 5 C 1.53040 * 109.45710 * 179.97438 * 3 2 1 6 6 C 1.53190 * 109.31349 * 58.65633 * 5 3 2 7 7 N 1.46918 * 108.77473 * 54.63574 * 6 5 3 8 8 C 1.34773 * 120.63182 * 126.36791 * 7 6 5 9 9 O 1.21362 * 119.99954 * 6.71377 * 8 7 6 10 10 C 1.49370 * 120.00398 * 186.70733 * 8 7 6 11 11 O 1.21361 * 119.99364 * 6.90570 * 10 8 7 12 12 N 1.34771 * 120.00456 * 186.90146 * 10 8 7 13 13 C 1.39110 * 120.00110 * 183.73493 * 12 10 8 14 14 C 1.39711 * 119.58190 * 339.50106 * 13 12 10 15 15 C 1.38650 * 119.49430 * 179.97438 * 14 13 12 16 16 C 1.38344 * 118.67266 * 0.02562 * 15 14 13 17 17 C 1.40602 * 119.13644 * 359.97438 * 16 15 14 18 18 C 1.41335 * 119.78509 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00037 * 5.29185 * 18 17 16 20 20 C 1.40027 * 119.99897 * 185.28326 * 18 17 16 21 21 N 1.30748 * 120.00059 * 211.65779 * 20 18 17 22 22 Si 1.86801 * 120.00119 * 31.66175 * 20 18 17 23 23 H 1.48499 * 109.46711 * 270.00028 * 22 20 18 24 24 H 1.48500 * 109.46773 * 29.99491 * 22 20 18 25 25 H 1.48495 * 109.47256 * 149.99410 * 22 20 18 26 26 N 1.31944 * 119.57579 * 159.74985 * 13 12 10 27 27 C 1.46932 * 118.73975 * 306.64142 * 7 6 5 28 28 C 1.52764 * 109.00521 * 53.31066 * 27 7 6 29 29 H 1.08998 * 109.47106 * 300.00222 * 1 2 3 30 30 H 1.08999 * 109.46901 * 59.99484 * 1 2 3 31 31 H 1.08994 * 109.47476 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47280 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47050 * 299.96113 * 4 3 2 34 34 H 1.08999 * 109.47198 * 59.96088 * 4 3 2 35 35 H 1.09005 * 109.49776 * 298.70309 * 5 3 2 36 36 H 1.09000 * 109.52534 * 178.63231 * 5 3 2 37 37 H 1.09001 * 109.58295 * 294.84771 * 6 5 3 38 38 H 1.08998 * 109.58612 * 174.42628 * 6 5 3 39 39 H 0.97000 * 120.00181 * 3.74404 * 12 10 8 40 40 H 1.08000 * 120.25010 * 359.97050 * 14 13 12 41 41 H 1.08003 * 120.66312 * 179.97438 * 15 14 13 42 42 H 1.08004 * 120.43237 * 180.02562 * 16 15 14 43 43 H 0.96996 * 120.00074 * 354.98995 * 21 20 18 44 44 H 1.08994 * 109.58452 * 173.14162 * 27 7 6 45 45 H 1.08996 * 109.58730 * 293.57183 * 27 7 6 46 46 H 1.08994 * 109.56151 * 185.55298 * 28 27 7 47 47 H 1.09000 * 109.38560 * 65.51317 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5591 2.0640 1.2499 5 6 3.5358 1.1844 0.0006 6 6 3.9819 0.3944 -1.2337 7 7 3.4282 1.0383 -2.4327 8 6 4.2323 1.3960 -3.4533 9 8 5.4038 1.0793 -3.4427 10 6 3.6817 2.1823 -4.5978 11 8 2.5456 2.6063 -4.5517 12 7 4.4466 2.4208 -5.6815 13 6 3.9617 3.2180 -6.7133 14 6 2.5846 3.4127 -6.8455 15 6 2.1033 4.2081 -7.8742 16 6 3.0092 4.7879 -8.7444 17 6 4.3831 4.5538 -8.5586 18 6 5.3205 5.1388 -9.4398 19 1 4.9885 5.8310 -10.1995 20 6 6.6796 4.8212 -9.3277 21 7 7.5865 5.7115 -9.6348 22 14 7.1971 3.1254 -8.7396 23 1 7.3323 3.1344 -7.2608 24 1 6.1701 2.1291 -9.1367 25 1 8.5002 2.7648 -9.3537 26 7 4.8080 3.7766 -7.5574 27 6 1.9820 1.2902 -2.4953 28 6 1.5577 2.0652 -1.2490 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.0026 3.0597 1.2505 33 1 0.4726 2.1504 1.2501 34 1 1.8807 1.5223 2.1394 35 1 3.8591 0.6638 0.9021 36 1 3.9803 2.1793 -0.0239 37 1 3.6132 -0.6291 -1.1653 38 1 5.0703 0.3899 -1.2910 39 1 5.3351 2.0365 -5.7422 40 1 1.9002 2.9472 -6.1518 41 1 1.0425 4.3711 -7.9943 42 1 2.6656 5.4129 -9.5554 43 1 7.3203 6.5659 -10.0089 44 1 1.7515 1.8767 -3.3846 45 1 1.4470 0.3413 -2.5319 46 1 0.4730 2.1715 -1.2371 47 1 2.0199 3.0522 -1.2619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890065761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:33 Heat of formation + Delta-G solvation = -77.773095 kcal Electronic energy + Delta-G solvation = -31154.299525 eV Core-core repulsion = 26916.247156 eV Total energy + Delta-G solvation = -4238.052369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.52972 -41.12793 -40.16061 -39.43498 -37.41225 -36.29034 -35.43289 -33.81466 -32.89836 -32.28791 -31.50777 -29.70444 -27.85823 -27.45596 -26.44359 -24.55163 -24.20239 -23.58270 -22.61755 -21.56955 -20.70075 -20.25309 -19.25924 -18.46492 -17.88748 -17.42193 -16.98881 -16.92670 -16.61100 -16.47426 -16.22960 -16.14662 -15.83169 -15.68732 -15.44978 -14.79561 -14.73915 -14.40779 -14.25918 -14.20634 -14.17055 -13.95449 -13.69104 -13.31746 -13.05159 -12.91483 -12.88733 -12.77703 -12.31571 -12.23987 -12.12465 -12.11718 -11.96422 -11.87725 -11.71298 -11.27331 -10.94766 -10.58562 -10.42346 -10.01373 -9.93737 -9.86247 -9.45606 -9.27927 -6.76654 -0.10731 0.74819 0.85479 1.02316 1.50642 1.60043 1.85980 1.93421 2.23817 2.36187 2.53665 2.84742 2.98827 3.54818 3.67045 3.69222 3.87653 4.02544 4.09820 4.23731 4.29387 4.35913 4.47363 4.52393 4.54948 4.62674 4.65049 4.67863 4.69146 4.72499 4.77676 4.86381 4.92132 4.94532 5.06842 5.09578 5.21208 5.25160 5.27840 5.36599 5.38917 5.45212 5.68827 5.75830 5.92510 5.98043 6.12388 6.32599 6.40123 6.49085 6.65452 6.73710 7.56639 7.85499 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.002710 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.651661 B =10330.070652 C =11184.986292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.390 6.390 3 C 0.111 3.889 4 C -0.173 4.173 5 C -0.115 4.115 6 C 0.110 3.890 7 N -0.566 5.566 8 C 0.515 3.485 9 O -0.541 6.541 10 C 0.517 3.483 11 O -0.486 6.486 12 N -0.623 5.623 13 C 0.362 3.638 14 C -0.309 4.309 15 C -0.027 4.027 16 C -0.292 4.292 17 C 0.257 3.743 18 C -0.521 4.521 19 H 0.075 0.925 20 C 0.038 3.962 21 N -0.804 5.804 22 Si 1.145 2.855 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.301 1.301 26 N -0.615 5.615 27 C 0.052 3.948 28 C -0.152 4.152 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.420 0.580 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.115 0.885 43 H 0.286 0.714 44 H 0.144 0.856 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.547 -10.458 21.322 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.310 6.310 3 C 0.072 3.928 4 C -0.230 4.230 5 C -0.153 4.153 6 C -0.011 4.011 7 N -0.299 5.299 8 C 0.296 3.704 9 O -0.419 6.419 10 C 0.300 3.700 11 O -0.363 6.363 12 N -0.269 5.269 13 C 0.131 3.869 14 C -0.333 4.333 15 C -0.051 4.051 16 C -0.314 4.314 17 C 0.133 3.867 18 C -0.553 4.553 19 H 0.093 0.907 20 C -0.184 4.184 21 N -0.425 5.425 22 Si 0.972 3.028 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.231 1.231 26 N -0.340 5.340 27 C -0.068 4.068 28 C -0.190 4.190 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.258 0.742 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.133 0.867 43 H 0.098 0.902 44 H 0.160 0.840 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.425 -11.417 21.833 27.158 hybrid contribution -1.688 1.725 -1.015 2.618 sum -13.113 -9.692 20.818 26.444 Atomic orbital electron populations 1.22936 0.80462 1.03449 1.00916 1.87930 1.20720 1.27278 1.95074 1.21511 0.93367 0.83559 0.94376 1.22357 1.02508 1.00976 0.97202 1.21942 0.93362 1.01791 0.98218 1.21827 0.99880 0.97091 0.82322 1.48020 1.09178 1.56431 1.16227 1.19568 0.86085 0.80827 0.83881 1.90774 1.17145 1.55087 1.78860 1.20397 0.85507 0.81156 0.82945 1.90207 1.17300 1.50586 1.78174 1.43010 1.20459 1.46796 1.16596 1.18456 0.90102 0.90543 0.87791 1.22085 0.93413 1.11763 1.06084 1.21355 0.99752 0.92484 0.91545 1.21843 0.93393 1.10910 1.05257 1.18328 0.92138 0.87518 0.88719 1.20568 0.94017 1.24973 1.15714 0.90687 1.28200 0.92843 1.06268 0.91050 1.70645 1.38702 1.06620 1.26560 0.82303 0.73245 0.70041 0.77219 1.20014 1.21346 1.23066 1.66482 1.38046 1.19355 1.10105 1.23099 0.77535 1.02613 1.03589 1.22376 1.02986 0.99500 0.94117 0.92786 0.93368 0.88995 0.91056 0.91213 0.91224 0.88011 0.90063 0.89424 0.89464 0.74203 0.82080 0.83444 0.86661 0.90229 0.83986 0.90504 0.88647 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.21 113.37 1.16 1.35 16 2 O -0.39 -5.96 9.08 -148.98 -1.35 -7.31 16 3 C 0.11 1.56 0.71 -10.77 -0.01 1.55 16 4 C -0.17 -1.83 8.25 71.98 0.59 -1.23 16 5 C -0.12 -1.70 5.11 30.67 0.16 -1.55 16 6 C 0.11 2.11 6.18 86.36 0.53 2.64 16 7 N -0.57 -13.24 2.98 -821.43 -2.45 -15.68 16 8 C 0.51 15.31 7.74 87.24 0.68 15.98 16 9 O -0.54 -18.35 15.95 -3.28 -0.05 -18.41 16 10 C 0.52 17.11 7.67 87.24 0.67 17.78 16 11 O -0.49 -15.82 9.74 -3.28 -0.03 -15.85 16 12 N -0.62 -24.00 5.39 -309.70 -1.67 -25.67 16 13 C 0.36 16.24 7.51 133.30 1.00 17.25 16 14 C -0.31 -12.69 8.90 22.72 0.20 -12.48 16 15 C -0.03 -1.09 10.15 22.39 0.23 -0.86 16 16 C -0.29 -13.43 9.83 22.87 0.22 -13.21 16 17 C 0.26 13.53 6.24 40.20 0.25 13.78 16 18 C -0.52 -28.68 9.36 23.47 0.22 -28.46 16 19 H 0.08 4.15 8.06 -2.91 -0.02 4.12 16 20 C 0.04 2.08 5.43 85.29 0.46 2.54 16 21 N -0.80 -43.77 13.65 21.84 0.30 -43.47 16 22 Si 1.15 54.83 26.15 68.60 1.79 56.63 16 23 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 26 N -0.62 -31.37 6.19 -186.42 -1.15 -32.53 16 27 C 0.05 1.05 6.01 86.22 0.52 1.57 16 28 C -0.15 -2.40 4.46 30.53 0.14 -2.27 16 29 H 0.05 0.45 6.42 -2.39 -0.02 0.43 16 30 H 0.05 0.48 6.44 -2.39 -0.02 0.47 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.63 6.54 -2.39 -0.02 0.61 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.60 7.81 -2.39 -0.02 1.58 16 38 H 0.09 1.83 7.05 -2.39 -0.02 1.82 16 39 H 0.42 15.87 8.33 -92.71 -0.77 15.09 16 40 H 0.16 6.01 5.14 -5.69 -0.03 5.98 16 41 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 42 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 43 H 0.29 15.05 8.73 -92.71 -0.81 14.24 16 44 H 0.14 3.42 3.77 -73.29 -0.28 3.14 16 45 H 0.08 1.44 7.81 -2.39 -0.02 1.42 16 46 H 0.10 1.22 6.61 -2.39 -0.02 1.21 16 47 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -63.09 371.89 2.34 -60.75 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.07 Total: 27.17 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 7.02 Total: 14.37 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -4.97 Total: -117.35 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.44 Total: -41.56 kcal Atomic # 14 Polarization: 54.83 SS G_CDS: 1.79 Total: 56.63 kcal Total: -63.09 2.34 -60.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890065761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.020 kcal (2) G-P(sol) polarization free energy of solvation -63.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds