Wall clock time and date at job start Wed Apr 1 2020 04:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42892 * 114.00178 * 2 1 4 4 C 1.52994 * 109.52787 * 300.07865 * 3 2 1 5 5 C 1.53043 * 109.49777 * 179.97438 * 3 2 1 6 6 C 1.53042 * 109.54050 * 301.41292 * 5 3 2 7 7 C 1.53184 * 109.31395 * 298.63652 * 6 5 3 8 8 N 1.46926 * 108.77715 * 54.63463 * 7 6 5 9 9 C 1.34771 * 120.63272 * 126.36910 * 8 7 6 10 10 O 1.21356 * 120.00085 * 173.14637 * 9 8 7 11 11 C 1.49369 * 119.99889 * 353.15200 * 9 8 7 12 12 O 1.21353 * 120.00079 * 353.51709 * 11 9 8 13 13 N 1.34777 * 119.99551 * 173.52250 * 11 9 8 14 14 C 1.39120 * 119.99654 * 184.66340 * 13 11 9 15 15 C 1.39703 * 119.57831 * 176.08504 * 14 13 11 16 16 C 1.38659 * 119.49076 * 179.97438 * 15 14 13 17 17 C 1.38341 * 118.67150 * 359.73042 * 16 15 14 18 18 C 1.40598 * 119.13887 * 0.53223 * 17 16 15 19 19 C 1.41331 * 119.79044 * 179.73242 * 18 17 16 20 20 H 1.07998 * 119.99740 * 359.72402 * 19 18 17 21 21 C 1.40026 * 120.00381 * 179.45606 * 19 18 17 22 22 N 1.30742 * 119.99693 * 0.26995 * 21 19 18 23 23 Si 1.86795 * 120.00103 * 180.27494 * 21 19 18 24 24 H 1.48496 * 109.47394 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47185 * 119.99617 * 23 21 19 26 26 H 1.48506 * 109.47104 * 239.99554 * 23 21 19 27 27 N 1.31937 * 119.57831 * 356.06092 * 14 13 11 28 28 C 1.46930 * 118.73671 * 306.63996 * 8 7 6 29 29 H 1.08999 * 109.47191 * 299.99790 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00057 * 1 2 3 31 31 H 1.09002 * 109.47595 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47373 * 299.92253 * 4 3 2 33 33 H 1.09002 * 109.46767 * 59.91547 * 4 3 2 34 34 H 1.08999 * 109.47758 * 179.91761 * 4 3 2 35 35 H 1.09008 * 109.45837 * 181.39285 * 5 3 2 36 36 H 1.08999 * 109.46204 * 61.43959 * 5 3 2 37 37 H 1.09000 * 109.49751 * 178.67808 * 6 5 3 38 38 H 1.09002 * 109.49420 * 58.58720 * 6 5 3 39 39 H 1.09000 * 109.58574 * 294.84780 * 7 6 5 40 40 H 1.08998 * 109.70475 * 174.48980 * 7 6 5 41 41 H 0.96995 * 120.00576 * 4.65903 * 13 11 9 42 42 H 1.07996 * 120.25776 * 0.02562 * 15 14 13 43 43 H 1.08002 * 120.65900 * 180.02562 * 16 15 14 44 44 H 1.07998 * 120.43217 * 180.26500 * 17 16 15 45 45 H 0.97005 * 119.99708 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.58478 * 173.14360 * 28 8 7 47 47 H 1.09003 * 109.58594 * 293.57224 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5580 2.0665 -1.2478 5 6 3.5359 1.1852 0.0006 6 6 3.9867 0.3958 1.2319 7 6 3.5602 1.1450 2.4981 8 7 2.1132 1.3925 2.4365 9 6 1.3074 1.0096 3.4466 10 8 0.1365 1.3282 3.4429 11 6 1.8557 0.1931 4.5709 12 8 2.9938 -0.2249 4.5185 13 7 1.0863 -0.0794 5.6434 14 6 1.6259 -0.7562 6.7326 15 6 0.8449 -0.9619 7.8725 16 6 1.3844 -1.6371 8.9568 17 6 2.6874 -2.0942 8.8726 18 6 3.4239 -1.8509 7.7000 19 6 4.7580 -2.3068 7.6014 20 1 5.2101 -2.8363 8.4271 21 6 5.4919 -2.0769 6.4313 22 7 4.9446 -1.4358 5.4318 23 14 7.2527 -2.6862 6.2982 24 1 7.6342 -3.3762 7.5565 25 1 7.3639 -3.6338 5.1602 26 1 8.1600 -1.5324 6.0721 27 7 2.8685 -1.1959 6.6755 28 6 1.5606 2.0599 1.2499 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8797 1.5274 -2.1388 33 1 0.4713 2.1518 -1.2474 34 1 2.0006 3.0626 -1.2462 35 1 3.9786 2.1810 0.0256 36 1 3.8597 0.6667 -0.9018 37 1 5.0715 0.2904 1.2193 38 1 3.5247 -0.5914 1.2202 39 1 4.0912 2.0951 2.5568 40 1 3.7907 0.5426 3.3768 41 1 0.1565 0.1963 5.6560 42 1 -0.1714 -0.5985 7.9086 43 1 0.7974 -1.8069 9.8473 44 1 3.1345 -2.6272 9.6987 45 1 5.4529 -1.2769 4.6210 46 1 0.4720 2.0588 1.3039 47 1 1.9253 3.0861 1.2048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890241257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:08 Heat of formation + Delta-G solvation = -48.828069 kcal Electronic energy + Delta-G solvation = -32233.723415 eV Core-core repulsion = 27996.926197 eV Total energy + Delta-G solvation = -4236.797218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.14939 -40.84364 -39.80474 -38.88457 -37.38647 -36.02563 -34.93905 -33.87606 -32.54071 -32.25483 -31.08521 -28.45404 -28.14079 -27.54662 -26.79612 -25.09303 -23.47124 -23.15230 -22.60250 -21.20860 -20.53643 -19.58400 -18.43610 -18.24730 -17.66488 -17.35076 -16.88397 -16.48403 -16.41565 -16.28676 -16.25323 -16.04378 -15.54728 -15.46804 -14.97810 -14.87798 -14.65858 -14.37868 -13.91673 -13.78569 -13.75669 -13.59336 -13.50486 -13.02235 -12.88449 -12.78439 -12.73264 -12.60950 -12.54201 -12.32032 -12.29687 -11.89305 -11.77553 -11.72707 -11.55292 -11.27787 -10.91055 -10.71866 -10.10397 -9.92458 -9.71057 -9.09043 -8.91992 -8.07419 -6.40667 0.33060 1.02772 1.26881 1.34206 1.45124 1.55419 1.57990 2.29512 2.32647 2.47574 2.82091 2.99571 3.30878 3.60069 3.78226 3.84498 4.02592 4.10092 4.26521 4.30905 4.33081 4.38543 4.44903 4.55726 4.56137 4.66719 4.71824 4.76364 4.80445 4.83383 4.88536 4.92441 4.95077 5.01667 5.06767 5.18477 5.22184 5.33099 5.42162 5.44902 5.64273 5.80361 5.90600 6.00009 6.12350 6.26181 6.29675 6.48743 6.72804 6.82180 7.05592 7.29555 8.25226 8.57236 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.003944 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.092323 B = 7097.715514 C = 8901.544364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.096 3.904 4 C -0.168 4.168 5 C -0.101 4.101 6 C -0.119 4.119 7 C 0.043 3.957 8 N -0.564 5.564 9 C 0.514 3.486 10 O -0.551 6.551 11 C 0.462 3.538 12 O -0.398 6.398 13 N -0.631 5.631 14 C 0.348 3.652 15 C -0.344 4.344 16 C -0.033 4.033 17 C -0.322 4.322 18 C 0.238 3.762 19 C -0.459 4.459 20 H 0.086 0.914 21 C 0.017 3.983 22 N -0.690 5.690 23 Si 0.973 3.027 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.267 1.267 27 N -0.503 5.503 28 C 0.077 3.923 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.423 0.577 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.108 0.892 45 H 0.275 0.725 46 H 0.089 0.911 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 8.459 -14.055 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.313 6.313 3 C 0.056 3.944 4 C -0.226 4.226 5 C -0.138 4.138 6 C -0.157 4.157 7 C -0.078 4.078 8 N -0.296 5.296 9 C 0.296 3.704 10 O -0.431 6.431 11 C 0.241 3.759 12 O -0.264 6.264 13 N -0.280 5.280 14 C 0.110 3.890 15 C -0.369 4.369 16 C -0.057 4.057 17 C -0.345 4.345 18 C 0.113 3.887 19 C -0.489 4.489 20 H 0.104 0.896 21 C -0.209 4.209 22 N -0.309 5.309 23 Si 0.794 3.206 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.192 1.192 27 N -0.223 5.223 28 C -0.044 4.044 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.154 0.846 41 H 0.261 0.739 42 H 0.145 0.855 43 H 0.156 0.844 44 H 0.126 0.874 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.769 8.424 -15.134 17.541 hybrid contribution -0.675 -0.249 0.918 1.166 sum -3.444 8.175 -14.216 16.757 Atomic orbital electron populations 1.22864 0.80999 1.02977 1.00576 1.87986 1.20204 1.28149 1.94986 1.21999 0.95119 0.83450 0.93831 1.22302 1.02472 1.01557 0.96254 1.21619 0.91496 1.02208 0.98525 1.21662 1.01533 0.98786 0.93713 1.23308 0.77584 1.02651 1.04229 1.47832 1.09013 1.55755 1.16985 1.20094 0.85964 0.80399 0.83931 1.90649 1.17036 1.56662 1.78730 1.20767 0.87377 0.83572 0.84165 1.90776 1.15524 1.45416 1.74701 1.43033 1.15001 1.55384 1.14608 1.18980 0.91835 0.92077 0.86136 1.20936 1.01806 1.18181 0.96005 1.21029 0.94129 0.93436 0.97117 1.21850 0.97434 1.14340 1.00862 1.18836 0.93919 0.88826 0.87121 1.19923 0.95940 1.31733 1.01340 0.89609 1.26917 1.03696 0.95081 0.95161 1.70441 1.36021 1.22358 1.02098 0.85296 0.77391 0.78706 0.79178 1.18246 1.19666 1.19225 1.68587 1.08179 1.16376 1.29168 1.22513 1.00805 0.97238 0.83877 0.94941 0.91449 0.89927 0.90718 0.91505 0.89148 0.88111 0.90102 0.89534 0.93731 0.90344 0.84616 0.73885 0.85456 0.84405 0.87418 0.91437 0.89308 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.22 113.37 1.16 1.65 16 2 O -0.39 -10.40 9.54 -148.98 -1.42 -11.83 16 3 C 0.10 1.95 0.73 -10.86 -0.01 1.94 16 4 C -0.17 -2.24 8.26 71.98 0.59 -1.64 16 5 C -0.10 -1.93 4.92 30.62 0.15 -1.78 16 6 C -0.12 -3.09 5.94 30.67 0.18 -2.91 16 7 C 0.04 1.28 6.27 86.36 0.54 1.82 16 8 N -0.56 -17.22 2.92 -821.42 -2.40 -19.62 16 9 C 0.51 18.78 7.74 87.24 0.68 19.46 16 10 O -0.55 -20.53 15.94 -3.26 -0.05 -20.58 16 11 C 0.46 19.82 7.73 87.24 0.67 20.49 16 12 O -0.40 -19.15 8.84 -3.26 -0.03 -19.18 16 13 N -0.63 -26.72 5.37 -309.70 -1.66 -28.39 16 14 C 0.35 17.04 7.43 133.30 0.99 18.03 16 15 C -0.34 -15.00 9.95 22.72 0.23 -14.78 16 16 C -0.03 -1.43 10.15 22.39 0.23 -1.21 16 17 C -0.32 -15.93 9.83 22.87 0.22 -15.70 16 18 C 0.24 13.35 6.55 40.20 0.26 13.62 16 19 C -0.46 -25.08 9.14 23.47 0.21 -24.87 16 20 H 0.09 4.43 7.85 -2.91 -0.02 4.40 16 21 C 0.02 0.89 5.50 85.29 0.47 1.36 16 22 N -0.69 -36.71 8.98 21.84 0.20 -36.51 16 23 Si 0.97 38.55 29.56 68.60 2.03 40.58 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 25 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 27 N -0.50 -28.12 5.73 -186.43 -1.07 -29.19 16 28 C 0.08 1.79 4.90 86.22 0.42 2.21 16 29 H 0.03 0.83 6.29 -2.39 -0.02 0.82 16 30 H 0.07 1.13 6.42 -2.39 -0.02 1.12 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.84 6.54 -2.39 -0.02 0.83 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.04 1.45 7.61 -2.39 -0.02 1.43 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.14 5.29 3.78 -79.31 -0.30 4.99 16 41 H 0.42 15.25 8.18 -92.71 -0.76 14.49 16 42 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 45 H 0.27 13.41 8.29 -92.70 -0.77 12.65 16 46 H 0.09 2.22 5.16 -2.39 -0.01 2.21 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -68.74 372.88 2.57 -66.17 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: -0.03 Total: 40.83 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 7.01 Total: 17.71 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -4.94 Total: -113.71 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -1.50 Total: -51.59 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -68.74 2.57 -66.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890241257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.346 kcal (2) G-P(sol) polarization free energy of solvation -68.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds