Wall clock time and date at job start Wed Apr 1 2020 04:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38356 * 119.40688 * 2 1 4 4 C 1.38332 * 119.45897 * 180.02562 * 3 2 1 5 5 C 1.39997 * 118.34869 * 359.97438 * 4 3 2 6 6 C 1.47527 * 120.59464 * 180.02562 * 5 4 3 7 7 O 1.21593 * 119.99578 * 227.53219 * 6 5 4 8 8 N 1.34767 * 120.00301 * 47.53340 * 6 5 4 9 9 C 1.47092 * 125.63029 * 5.11175 * 8 6 5 10 10 C 1.54464 * 107.29658 * 181.00205 * 9 8 6 11 11 C 1.54362 * 102.87621 * 21.48907 * 10 9 8 12 12 C 1.47571 * 125.63219 * 184.79952 * 8 6 5 13 13 C 1.52363 * 110.42321 * 207.62253 * 11 10 9 14 14 N 1.47331 * 108.41229 * 186.40581 * 13 11 10 15 15 C 1.36938 * 121.08001 * 229.18718 * 14 13 11 16 16 H 1.08003 * 119.99604 * 148.73990 * 15 14 13 17 17 C 1.38805 * 120.00247 * 328.74036 * 15 14 13 18 18 N 1.31625 * 119.99669 * 348.95908 * 17 15 14 19 19 Si 1.86799 * 120.00199 * 168.95802 * 17 15 14 20 20 H 1.48495 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47281 * 119.99918 * 19 17 15 22 22 H 1.48499 * 109.47164 * 240.00049 * 19 17 15 23 23 C 1.47170 * 117.83786 * 49.17083 * 14 13 11 24 24 C 1.53280 * 108.56791 * 308.75923 * 23 14 13 25 25 O 1.41881 * 110.74883 * 83.66026 * 11 10 9 26 26 C 1.40275 * 118.80487 * 0.02562 * 5 4 3 27 27 O 1.35434 * 119.79997 * 179.72625 * 26 5 4 28 28 N 1.31884 * 119.40985 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47059 * 90.00701 * 1 2 3 30 30 H 1.09001 * 109.47296 * 210.00130 * 1 2 3 31 31 H 1.08996 * 109.47245 * 330.00496 * 1 2 3 32 32 H 1.08001 * 120.27387 * 0.03507 * 3 2 1 33 33 H 1.08003 * 120.82582 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.87665 * 300.41903 * 9 8 6 35 35 H 1.08997 * 109.87816 * 61.57263 * 9 8 6 36 36 H 1.08995 * 110.73538 * 139.83917 * 10 9 8 37 37 H 1.09000 * 110.73023 * 262.96805 * 10 9 8 38 38 H 1.08998 * 110.37803 * 275.50394 * 12 8 6 39 39 H 1.08999 * 110.37538 * 37.85010 * 12 8 6 40 40 H 1.09006 * 109.66899 * 306.13214 * 13 11 10 41 41 H 1.08995 * 109.67831 * 66.63738 * 13 11 10 42 42 H 0.97000 * 119.99320 * 180.02562 * 18 17 15 43 43 H 1.08995 * 109.62461 * 68.48475 * 23 14 13 44 44 H 1.08998 * 109.61940 * 188.85053 * 23 14 13 45 45 H 1.09000 * 109.51515 * 172.93458 * 24 23 14 46 46 H 1.09004 * 109.51117 * 293.08595 * 24 23 14 47 47 H 0.96706 * 113.99479 * 89.99675 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0249 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2899 -0.8152 -0.7773 8 7 6.4133 0.6802 0.8604 9 6 5.8425 1.5272 1.9190 10 6 7.0203 2.2281 2.6313 11 6 8.1489 2.1578 1.5805 12 6 7.8838 0.7972 0.9010 13 6 9.5112 2.1542 2.2629 14 7 10.5522 2.2425 1.2240 15 6 11.6173 1.3819 1.2156 16 1 12.0707 1.0931 0.2788 17 6 12.1141 0.8807 2.4108 18 7 11.7131 1.3912 3.5558 19 14 13.3519 -0.5182 2.3944 20 1 13.6364 -0.9110 0.9908 21 1 14.6088 -0.0748 3.0492 22 1 12.7942 -1.6814 3.1300 23 6 10.4099 3.2855 0.1956 24 6 9.0029 3.1902 -0.4050 25 8 8.0368 3.2233 0.6505 26 6 3.4758 -1.2041 -0.0005 27 8 4.0991 -2.4064 -0.0061 28 7 2.1546 -1.1489 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6411 2.1376 0.0006 33 1 4.1222 2.1345 -0.0001 34 1 5.1787 2.2721 1.4800 35 1 5.2927 0.9111 2.6304 36 1 6.7710 3.2640 2.8611 37 1 7.2988 1.6897 3.5372 38 1 8.3130 -0.0139 1.4892 39 1 8.2929 0.7921 -0.1093 40 1 9.5880 3.0103 2.9332 41 1 9.6352 1.2316 2.8299 42 1 12.0606 1.0412 4.3910 43 1 10.5489 4.2673 0.6481 44 1 11.1552 3.1337 -0.5852 45 1 8.8363 4.0316 -1.0776 46 1 8.9057 2.2561 -0.9583 47 1 4.2837 -2.7578 0.8758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972569788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:05 Heat of formation + Delta-G solvation = -40.541991 kcal Electronic energy + Delta-G solvation = -31747.322949 eV Core-core repulsion = 27510.885042 eV Total energy + Delta-G solvation = -4236.437907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.10396 -39.98699 -38.44047 -37.43971 -36.12575 -34.48521 -33.46297 -31.89029 -31.66543 -31.26885 -29.18217 -28.49593 -27.45559 -25.74584 -23.77086 -23.58853 -23.29896 -22.56916 -21.13447 -19.97960 -18.86454 -18.78558 -17.52284 -17.12003 -16.95186 -16.27083 -16.12685 -15.46302 -15.16688 -14.92912 -14.69835 -14.41026 -14.28544 -14.17936 -13.86677 -13.53928 -13.44286 -13.19998 -13.07177 -12.85909 -12.64600 -12.48089 -12.39080 -12.11496 -11.89318 -11.85808 -11.39282 -11.14058 -11.08046 -10.89105 -10.80382 -10.51386 -10.28141 -10.22991 -10.10462 -10.03869 -9.61434 -9.55351 -9.09911 -9.06123 -8.60785 -8.42587 -6.72834 -5.89669 -3.38122 0.44482 0.83687 2.68875 2.95474 3.23590 3.31821 3.40241 3.42612 3.45779 4.13326 4.21433 4.33662 4.39169 4.48297 4.67078 4.76860 4.88122 5.02231 5.03681 5.20167 5.22108 5.23579 5.29587 5.34484 5.46455 5.59020 5.61262 5.67275 5.72308 5.77501 5.84189 5.96911 6.02457 6.11304 6.13554 6.19439 6.21976 6.40984 6.46808 6.59211 6.75703 6.98489 7.25927 7.35130 7.56187 7.62619 7.70091 7.85187 8.21864 8.31028 9.07163 9.67821 10.27480 11.18864 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002980 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.194005 B = 9395.029517 C =10124.239633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.188 4.188 4 C -0.026 4.026 5 C -0.193 4.193 6 C 0.574 3.426 7 O -0.518 6.518 8 N -0.608 5.608 9 C 0.102 3.898 10 C -0.116 4.116 11 C 0.085 3.915 12 C 0.097 3.903 13 C 0.166 3.834 14 N -0.594 5.594 15 C -0.253 4.253 16 H 0.067 0.933 17 C 0.007 3.993 18 N -0.905 5.905 19 Si 0.904 3.096 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.110 3.890 24 C 0.044 3.956 25 O -0.373 6.373 26 C 0.363 3.637 27 O -0.465 6.465 28 N -0.506 5.506 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.035 0.965 41 H 0.093 0.907 42 H 0.255 0.745 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.910 2.468 -1.878 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.208 4.208 4 C -0.052 4.052 5 C -0.200 4.200 6 C 0.361 3.639 7 O -0.394 6.394 8 N -0.342 5.342 9 C -0.021 4.021 10 C -0.154 4.154 11 C 0.043 3.957 12 C -0.025 4.025 13 C 0.040 3.960 14 N -0.318 5.318 15 C -0.383 4.383 16 H 0.085 0.915 17 C -0.192 4.192 18 N -0.549 5.549 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.214 1.214 23 C -0.016 4.016 24 C -0.033 4.033 25 O -0.292 6.292 26 C 0.183 3.817 27 O -0.272 6.272 28 N -0.226 5.226 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -21.116 1.337 -2.778 21.340 hybrid contribution 1.463 -0.177 0.517 1.562 sum -19.653 1.159 -2.261 19.816 Atomic orbital electron populations 1.20807 0.88172 1.03891 1.03562 1.21236 0.97020 0.87207 0.91782 1.21899 0.94394 0.99562 1.04905 1.21793 0.94345 0.97248 0.91772 1.21037 0.95036 0.94504 1.09401 1.17455 0.85631 0.80091 0.80715 1.90849 1.70755 1.38386 1.39434 1.48528 1.08323 1.44640 1.32672 1.22176 0.96957 0.93485 0.89446 1.22548 0.93239 1.01938 0.97686 1.22771 0.98118 0.85321 0.89503 1.22839 0.77954 0.98559 1.03112 1.21127 0.82191 1.02568 0.90148 1.44057 1.23903 1.34313 1.29544 1.19195 1.07501 1.19477 0.92110 0.91508 1.25174 0.98291 0.99999 0.95732 1.69971 1.46170 1.41900 0.96820 0.86191 0.80881 0.81793 0.77776 1.20110 1.21540 1.21436 1.21599 0.94223 0.92679 0.93136 1.23114 0.90460 1.00639 0.89126 1.87605 1.54979 1.47631 1.39018 1.19042 0.86165 0.84773 0.91689 1.84800 1.76516 1.32262 1.33587 1.67083 1.09193 1.30474 1.15879 0.89892 0.90134 0.90130 0.83731 0.83439 0.91390 0.91765 0.89121 0.88853 0.90127 0.89862 0.94694 0.88913 0.93505 0.95497 0.91840 0.89872 0.93513 0.73920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.01 0.37 -0.27 16 2 C 0.17 1.59 6.78 -82.53 -0.56 1.03 16 3 C -0.19 -1.58 9.71 -39.50 -0.38 -1.97 16 4 C -0.03 -0.27 8.53 -38.89 -0.33 -0.60 16 5 C -0.19 -2.64 5.34 -104.69 -0.56 -3.20 16 6 C 0.57 9.67 7.13 -12.48 -0.09 9.58 16 7 O -0.52 -10.89 16.79 -5.11 -0.09 -10.97 16 8 N -0.61 -9.59 3.33 -171.82 -0.57 -10.16 16 9 C 0.10 1.26 6.07 -2.95 -0.02 1.24 16 10 C -0.12 -1.60 6.11 -25.25 -0.15 -1.76 16 11 C 0.09 1.53 0.83 -89.51 -0.07 1.45 16 12 C 0.10 1.79 5.84 -2.73 -0.02 1.78 16 13 C 0.17 3.68 4.00 -3.91 -0.02 3.66 16 14 N -0.59 -14.28 2.97 -172.24 -0.51 -14.79 16 15 C -0.25 -6.71 9.63 -15.06 -0.15 -6.85 16 16 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 17 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 18 N -0.90 -25.02 11.20 55.49 0.62 -24.40 16 19 Si 0.90 21.27 29.57 -169.99 -5.03 16.24 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.11 2.25 6.71 -3.53 -0.02 2.22 16 24 C 0.04 0.79 6.79 37.30 0.25 1.04 16 25 O -0.37 -6.79 10.29 -35.22 -0.36 -7.15 16 26 C 0.36 5.02 7.75 -16.62 -0.13 4.89 16 27 O -0.46 -6.47 12.57 -28.39 -0.36 -6.83 16 28 N -0.51 -6.38 10.28 -9.21 -0.09 -6.48 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 32 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.15 1.37 6.50 -52.48 -0.34 1.03 16 34 H 0.07 0.72 5.82 -51.93 -0.30 0.42 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.24 8.00 -51.93 -0.42 0.83 16 38 H 0.08 1.60 7.82 -51.93 -0.41 1.19 16 39 H 0.08 1.73 6.08 -51.93 -0.32 1.41 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 2.26 6.18 -51.93 -0.32 1.94 16 42 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.25 7.96 -51.93 -0.41 0.83 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.05 0.87 6.27 -51.93 -0.33 0.54 16 47 H 0.40 3.63 9.06 45.56 0.41 4.05 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -34.24 377.75 -8.44 -42.68 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.78 Total: 3.83 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -1.97 Total: 12.34 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.56 Total: -55.83 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.81 Total: -24.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.24 -8.44 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972569788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.135 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds