Wall clock time and date at job start Wed Apr 1 2020 04:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38356 * 119.40688 * 2 1 4 4 C 1.38332 * 119.45897 * 180.02562 * 3 2 1 5 5 C 1.39997 * 118.34869 * 359.97438 * 4 3 2 6 6 C 1.47527 * 120.59464 * 180.02562 * 5 4 3 7 7 O 1.21593 * 119.99578 * 227.53219 * 6 5 4 8 8 N 1.34767 * 120.00301 * 47.53340 * 6 5 4 9 9 C 1.47092 * 125.63029 * 5.11175 * 8 6 5 10 10 C 1.54464 * 107.29658 * 181.00205 * 9 8 6 11 11 C 1.54362 * 102.87621 * 21.48907 * 10 9 8 12 12 C 1.47571 * 125.63219 * 184.79952 * 8 6 5 13 13 C 1.52363 * 110.42321 * 207.62253 * 11 10 9 14 14 N 1.47331 * 108.41229 * 186.40581 * 13 11 10 15 15 C 1.36938 * 121.08001 * 229.18718 * 14 13 11 16 16 H 1.08003 * 119.99604 * 148.73990 * 15 14 13 17 17 C 1.38805 * 120.00247 * 328.74036 * 15 14 13 18 18 N 1.31625 * 119.99669 * 348.95908 * 17 15 14 19 19 Si 1.86799 * 120.00199 * 168.95802 * 17 15 14 20 20 H 1.48495 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47281 * 119.99918 * 19 17 15 22 22 H 1.48499 * 109.47164 * 240.00049 * 19 17 15 23 23 C 1.47170 * 117.83786 * 49.17083 * 14 13 11 24 24 C 1.53280 * 108.56791 * 308.75923 * 23 14 13 25 25 O 1.41881 * 110.74883 * 83.66026 * 11 10 9 26 26 C 1.40275 * 118.80487 * 0.02562 * 5 4 3 27 27 O 1.35434 * 119.79997 * 179.72625 * 26 5 4 28 28 N 1.31884 * 119.40985 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47059 * 90.00701 * 1 2 3 30 30 H 1.09001 * 109.47296 * 210.00130 * 1 2 3 31 31 H 1.08996 * 109.47245 * 330.00496 * 1 2 3 32 32 H 1.08001 * 120.27387 * 0.03507 * 3 2 1 33 33 H 1.08003 * 120.82582 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.87665 * 300.41903 * 9 8 6 35 35 H 1.08997 * 109.87816 * 61.57263 * 9 8 6 36 36 H 1.08995 * 110.73538 * 139.83917 * 10 9 8 37 37 H 1.09000 * 110.73023 * 262.96805 * 10 9 8 38 38 H 1.08998 * 110.37803 * 275.50394 * 12 8 6 39 39 H 1.08999 * 110.37538 * 37.85010 * 12 8 6 40 40 H 1.09006 * 109.66899 * 306.13214 * 13 11 10 41 41 H 1.08995 * 109.67831 * 66.63738 * 13 11 10 42 42 H 0.97000 * 119.99320 * 180.02562 * 18 17 15 43 43 H 1.08995 * 109.62461 * 68.48475 * 23 14 13 44 44 H 1.08998 * 109.61940 * 188.85053 * 23 14 13 45 45 H 1.09000 * 109.51515 * 172.93458 * 24 23 14 46 46 H 1.09004 * 109.51117 * 293.08595 * 24 23 14 47 47 H 0.96706 * 113.99479 * 89.99675 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0249 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2899 -0.8152 -0.7773 8 7 6.4133 0.6802 0.8604 9 6 5.8425 1.5272 1.9190 10 6 7.0203 2.2281 2.6313 11 6 8.1489 2.1578 1.5805 12 6 7.8838 0.7972 0.9010 13 6 9.5112 2.1542 2.2629 14 7 10.5522 2.2425 1.2240 15 6 11.6173 1.3819 1.2156 16 1 12.0707 1.0931 0.2788 17 6 12.1141 0.8807 2.4108 18 7 11.7131 1.3912 3.5558 19 14 13.3519 -0.5182 2.3944 20 1 13.6364 -0.9110 0.9908 21 1 14.6088 -0.0748 3.0492 22 1 12.7942 -1.6814 3.1300 23 6 10.4099 3.2855 0.1956 24 6 9.0029 3.1902 -0.4050 25 8 8.0368 3.2233 0.6505 26 6 3.4758 -1.2041 -0.0005 27 8 4.0991 -2.4064 -0.0061 28 7 2.1546 -1.1489 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6411 2.1376 0.0006 33 1 4.1222 2.1345 -0.0001 34 1 5.1787 2.2721 1.4800 35 1 5.2927 0.9111 2.6304 36 1 6.7710 3.2640 2.8611 37 1 7.2988 1.6897 3.5372 38 1 8.3130 -0.0139 1.4892 39 1 8.2929 0.7921 -0.1093 40 1 9.5880 3.0103 2.9332 41 1 9.6352 1.2316 2.8299 42 1 12.0606 1.0412 4.3910 43 1 10.5489 4.2673 0.6481 44 1 11.1552 3.1337 -0.5852 45 1 8.8363 4.0316 -1.0776 46 1 8.9057 2.2561 -0.9583 47 1 4.2837 -2.7578 0.8758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972569788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:04 Heat of formation + Delta-G solvation = -67.540658 kcal Electronic energy + Delta-G solvation = -31748.493699 eV Core-core repulsion = 27510.885042 eV Total energy + Delta-G solvation = -4237.608657 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12896 -41.25300 -39.79378 -38.38984 -37.53414 -36.26661 -34.39554 -33.29178 -32.90823 -32.63764 -30.48883 -29.60344 -28.85135 -27.35108 -25.16063 -24.87378 -24.42189 -23.55279 -22.64022 -21.15828 -20.40198 -19.72813 -18.98623 -18.56547 -18.03464 -17.71992 -17.17113 -16.82130 -16.57423 -16.26894 -16.14345 -15.73959 -15.51249 -15.19571 -15.12963 -14.94552 -14.79529 -14.63991 -14.32395 -14.00313 -13.67242 -13.54628 -13.34584 -13.12241 -13.02574 -12.99487 -12.86935 -12.71974 -12.69797 -12.51963 -12.28144 -12.16746 -12.14135 -11.86751 -11.38031 -11.17809 -10.99654 -10.77672 -10.61334 -10.50331 -9.92675 -9.69661 -8.67484 -7.93443 -5.44517 -0.41838 0.04894 1.41405 1.44611 1.49777 1.53700 1.77254 2.37867 2.43751 2.60108 2.74191 3.17703 3.26046 3.45328 3.54668 3.62779 3.66851 3.76431 3.94463 4.02930 4.18511 4.22427 4.26834 4.31074 4.39826 4.48271 4.55813 4.61300 4.69574 4.71672 4.77760 4.83117 4.89821 4.92589 4.99610 5.01110 5.05811 5.10402 5.16358 5.19420 5.21261 5.50782 5.51255 5.59237 6.28261 6.31918 6.37854 6.45703 6.78969 6.94298 7.06808 7.72024 8.28077 9.12315 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002980 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.194005 B = 9395.029517 C =10124.239633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.162 3.838 3 C -0.169 4.169 4 C -0.022 4.022 5 C -0.213 4.213 6 C 0.575 3.425 7 O -0.575 6.575 8 N -0.604 5.604 9 C 0.104 3.896 10 C -0.110 4.110 11 C 0.092 3.908 12 C 0.105 3.895 13 C 0.176 3.824 14 N -0.614 5.614 15 C -0.264 4.264 16 H 0.061 0.939 17 C -0.039 4.039 18 N -0.929 5.929 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.289 1.289 23 C 0.106 3.894 24 C 0.052 3.948 25 O -0.368 6.368 26 C 0.346 3.654 27 O -0.489 6.489 28 N -0.529 5.529 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.190 0.810 33 H 0.164 0.836 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.063 0.937 42 H 0.253 0.747 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.122 0.878 46 H 0.035 0.965 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.211 4.445 -1.915 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.188 4.188 4 C -0.048 4.048 5 C -0.220 4.220 6 C 0.364 3.636 7 O -0.455 6.455 8 N -0.337 5.337 9 C -0.017 4.017 10 C -0.148 4.148 11 C 0.050 3.950 12 C -0.018 4.018 13 C 0.050 3.950 14 N -0.339 5.339 15 C -0.394 4.394 16 H 0.079 0.921 17 C -0.236 4.236 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.216 1.216 23 C -0.019 4.019 24 C -0.025 4.025 25 O -0.286 6.286 26 C 0.167 3.833 27 O -0.298 6.298 28 N -0.249 5.249 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.131 0.869 32 H 0.207 0.793 33 H 0.182 0.818 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.084 0.916 45 H 0.140 0.860 46 H 0.053 0.947 47 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -24.447 3.346 -2.798 24.833 hybrid contribution 2.424 -0.747 0.500 2.585 sum -22.023 2.599 -2.298 22.295 Atomic orbital electron populations 1.20960 0.85398 1.05309 1.04593 1.22026 0.98816 0.86887 0.89833 1.22343 0.93437 1.00835 1.02182 1.22020 0.95413 0.96311 0.91012 1.20791 0.92609 0.96059 1.12562 1.17986 0.87040 0.78910 0.79649 1.90808 1.72186 1.40758 1.41710 1.48536 1.06957 1.44886 1.33285 1.22417 0.96511 0.93898 0.88924 1.22608 0.91913 1.03748 0.96501 1.22540 0.97188 0.85051 0.90206 1.22469 0.80074 0.98248 1.00972 1.20905 0.84268 1.00045 0.89782 1.44320 1.23988 1.35082 1.30513 1.19408 1.08018 1.19953 0.91985 0.92093 1.25805 1.00138 1.02102 0.95529 1.70094 1.47258 1.43025 0.97044 0.85298 0.78829 0.79204 0.77702 1.19676 1.21412 1.21559 1.21748 0.96323 0.91479 0.92377 1.23099 0.88580 1.01698 0.89142 1.87616 1.54731 1.47378 1.38899 1.19186 0.86822 0.84570 0.92753 1.84745 1.76916 1.32999 1.35166 1.67155 1.08494 1.32328 1.16957 0.88833 0.90604 0.86884 0.79256 0.81812 0.88402 0.89284 0.86805 0.88635 0.92591 0.92643 0.96748 0.91838 0.93797 0.95596 0.91582 0.86026 0.94696 0.72395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.16 71.24 0.72 -0.09 16 2 C 0.16 2.56 6.78 42.58 0.29 2.85 16 3 C -0.17 -2.03 9.71 22.32 0.22 -1.81 16 4 C -0.02 -0.39 8.53 22.72 0.19 -0.19 16 5 C -0.21 -5.61 5.34 -19.91 -0.11 -5.72 16 6 C 0.58 19.57 7.13 86.69 0.62 20.19 16 7 O -0.57 -25.38 16.79 5.93 0.10 -25.28 16 8 N -0.60 -18.83 3.33 -815.80 -2.72 -21.55 16 9 C 0.10 2.27 6.07 86.76 0.53 2.80 16 10 C -0.11 -2.82 6.11 31.55 0.19 -2.63 16 11 C 0.09 3.30 0.83 -10.07 -0.01 3.29 16 12 C 0.11 4.04 5.84 86.64 0.51 4.55 16 13 C 0.18 8.05 4.00 86.01 0.34 8.40 16 14 N -0.61 -30.40 2.97 -698.86 -2.07 -32.48 16 15 C -0.26 -14.41 9.63 84.03 0.81 -13.60 16 16 H 0.06 3.33 7.85 -2.91 -0.02 3.30 16 17 C -0.04 -2.17 5.06 84.86 0.43 -1.74 16 18 N -0.93 -52.99 11.20 21.65 0.24 -52.74 16 19 Si 0.96 44.89 29.57 68.60 2.03 46.92 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 C 0.11 4.35 6.71 86.35 0.58 4.93 16 24 C 0.05 1.80 6.79 72.08 0.49 2.29 16 25 O -0.37 -12.78 10.29 -148.95 -1.53 -14.32 16 26 C 0.35 9.47 7.75 85.13 0.66 10.13 16 27 O -0.49 -14.23 12.57 -77.36 -0.97 -15.21 16 28 N -0.53 -12.59 10.28 -296.06 -3.04 -15.63 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.17 8.07 -2.39 -0.02 0.15 16 32 H 0.19 0.60 8.06 -2.91 -0.02 0.57 16 33 H 0.16 2.28 6.50 -2.91 -0.02 2.26 16 34 H 0.10 1.62 5.82 -2.39 -0.01 1.60 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.10 2.43 8.00 -2.39 -0.02 2.41 16 38 H 0.06 2.38 7.82 -2.39 -0.02 2.37 16 39 H 0.06 2.42 6.08 -2.39 -0.01 2.41 16 40 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.06 3.26 6.18 -2.39 -0.01 3.24 16 42 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 45 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 46 H 0.03 1.30 6.27 -2.38 -0.01 1.29 16 47 H 0.42 8.16 9.06 -74.05 -0.67 7.49 16 Total: -1.00 -79.39 377.75 -1.16 -80.55 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.34 Total: 16.11 kcal Atomic # 6 Polarization: 27.17 SS G_CDS: 6.46 Total: 33.63 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -7.59 Total: -122.40 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -2.41 Total: -54.80 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -79.39 -1.16 -80.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972569788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.009 kcal (2) G-P(sol) polarization free energy of solvation -79.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds