Wall clock time and date at job start Wed Apr 1 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 110.89183 * 2 1 4 4 C 1.34782 * 119.99822 * 297.57543 * 3 2 1 5 5 O 1.21553 * 119.99685 * 359.97438 * 4 3 2 6 6 C 1.47860 * 120.00160 * 179.97438 * 4 3 2 7 7 C 1.39603 * 120.11499 * 359.97438 * 6 4 3 8 8 C 1.37965 * 119.96317 * 180.02562 * 7 6 4 9 9 C 1.38286 * 120.20789 * 0.02562 * 8 7 6 10 10 C 1.38807 * 120.23600 * 359.97438 * 9 8 7 11 11 O 1.35917 * 119.97996 * 179.97438 * 10 9 8 12 12 C 1.42902 * 117.00299 * 0.02562 * 11 10 9 13 13 C 1.50700 * 109.47241 * 179.97438 * 12 11 10 14 14 N 1.34774 * 120.00052 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99698 * 359.97438 * 13 12 11 16 16 C 1.38496 * 120.03318 * 359.72146 * 10 9 8 17 17 C 1.55157 * 111.00515 * 123.92556 * 2 1 3 18 18 C 1.54334 * 103.02095 * 153.37497 * 17 2 1 19 19 N 1.47014 * 107.26782 * 338.14225 * 18 17 2 20 20 C 1.36945 * 125.64902 * 178.84833 * 19 18 17 21 21 H 1.07997 * 119.99756 * 179.68982 * 20 19 18 22 22 C 1.38805 * 119.99878 * 359.68887 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47428 * 108.70537 * 358.58102 * 19 18 17 29 29 H 1.09002 * 109.47666 * 182.43089 * 1 2 3 30 30 H 1.09008 * 109.47143 * 302.42655 * 1 2 3 31 31 H 1.08999 * 109.47170 * 62.42125 * 1 2 3 32 32 H 0.96991 * 120.00253 * 117.57206 * 3 2 1 33 33 H 1.08002 * 120.01733 * 0.03431 * 7 6 4 34 34 H 1.08002 * 119.89270 * 179.97438 * 8 7 6 35 35 H 1.08003 * 119.87804 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46616 * 300.00015 * 12 11 10 37 37 H 1.09000 * 109.46907 * 59.99462 * 12 11 10 38 38 H 0.97001 * 119.99856 * 359.97438 * 14 13 12 39 39 H 0.96996 * 119.99939 * 180.02562 * 14 13 12 40 40 H 1.07995 * 120.10166 * 180.27380 * 16 10 9 41 41 H 1.08998 * 110.71770 * 271.93665 * 17 2 1 42 42 H 1.09002 * 110.71853 * 35.03099 * 17 2 1 43 43 H 1.08998 * 109.99457 * 218.65928 * 18 17 2 44 44 H 1.09007 * 109.77698 * 97.49747 * 18 17 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 46 46 H 1.09003 * 110.36579 * 143.19056 * 28 19 18 47 47 H 1.08993 * 110.36917 * 265.41008 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 -1.0347 5 8 1.1162 1.7966 -1.9679 6 6 2.3146 3.5725 -1.0345 7 6 3.0857 4.0280 0.0364 8 6 3.5752 5.3179 0.0336 9 6 3.3041 6.1626 -1.0272 10 6 2.5382 5.7186 -2.0963 11 8 2.2745 6.5534 -3.1359 12 6 2.8175 7.8732 -3.0621 13 6 2.4244 8.6478 -4.2936 14 7 2.8262 9.9255 -4.4428 15 8 1.7463 8.1212 -5.1503 16 6 2.0472 4.4236 -2.1066 17 6 2.0861 -0.8084 1.2019 18 6 3.4656 -1.2798 0.6953 19 7 3.4270 -1.2429 -0.7738 20 6 4.4639 -1.5663 -1.6079 21 1 4.3330 -1.5113 -2.6785 22 6 5.6830 -1.9647 -1.0772 23 7 5.8424 -2.0322 0.2276 24 14 7.0972 -2.4066 -2.2150 25 1 8.2802 -2.7959 -1.4061 26 1 6.6966 -3.5413 -3.0850 27 1 7.4393 -1.2330 -3.0582 28 6 2.0851 -0.8063 -1.2007 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3634 0.5511 0.8675 31 1 -0.3633 0.4758 -0.9109 32 1 2.5885 1.6831 0.7446 33 1 3.2991 3.3709 0.8665 34 1 4.1714 5.6692 0.8628 35 1 3.6903 7.1712 -1.0241 36 1 2.4296 8.3766 -2.1765 37 1 3.9043 7.8160 -3.0008 38 1 3.3682 10.3467 -3.7574 39 1 2.5729 10.4241 -5.2353 40 1 1.4549 4.0756 -2.9399 41 1 2.1921 -0.1708 2.0795 42 1 1.4450 -1.6619 1.4223 43 1 3.6600 -2.2969 1.0357 44 1 4.2424 -0.6090 1.0627 45 1 6.6943 -2.3110 0.5983 46 1 2.1559 -0.1713 -2.0838 47 1 1.4523 -1.6699 -1.4050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046362389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:48 Heat of formation + Delta-G solvation = -48.031584 kcal Electronic energy + Delta-G solvation = -30329.476251 eV Core-core repulsion = 26092.713571 eV Total energy + Delta-G solvation = -4236.762680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.76367 -40.01187 -39.22703 -37.63630 -36.73671 -34.22965 -33.95582 -32.15295 -31.29845 -30.59459 -29.60466 -28.61972 -28.45512 -25.63482 -24.35935 -23.42854 -22.58442 -21.60094 -20.61096 -20.12762 -19.10407 -18.67620 -18.11140 -17.22177 -16.74221 -16.71818 -16.38825 -16.13198 -15.64473 -15.25406 -14.78426 -14.60991 -14.48605 -14.31151 -14.08383 -13.75488 -13.69230 -13.24135 -13.01170 -12.79325 -12.68508 -12.11597 -12.00033 -11.83425 -11.77099 -11.61958 -11.36298 -11.26149 -10.86127 -10.83236 -10.40743 -10.37539 -10.33116 -10.24512 -10.07319 -9.96517 -9.61004 -9.31806 -9.13429 -8.60862 -8.50641 -8.43057 -6.75302 -5.66446 -2.97872 0.77654 1.26739 2.08745 2.27001 3.01589 3.30022 3.44922 3.48343 3.50390 3.59282 3.90390 4.22598 4.44069 4.54324 4.55287 4.62453 4.64349 4.91301 4.99555 5.13833 5.27661 5.37389 5.42869 5.52262 5.65281 5.75720 5.78949 5.99804 6.05500 6.15135 6.18702 6.19984 6.21636 6.26661 6.38848 6.40468 6.43282 6.58259 6.70998 6.71954 6.88911 7.10759 7.17227 7.58588 7.59775 7.72000 7.83891 7.91744 8.30818 8.58211 9.28452 9.88388 10.54425 11.45657 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.002600 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.115935 B =10767.815093 C =11905.516396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.694 5.694 4 C 0.560 3.440 5 O -0.531 6.531 6 C -0.083 4.083 7 C -0.119 4.119 8 C -0.086 4.086 9 C -0.192 4.192 10 C 0.117 3.883 11 O -0.288 6.288 12 C 0.039 3.961 13 C 0.519 3.481 14 N -0.852 5.852 15 O -0.514 6.514 16 C -0.087 4.087 17 C -0.146 4.146 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.219 4.219 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.926 5.926 24 Si 0.910 3.090 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.286 1.286 28 C 0.130 3.870 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.397 0.603 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.403 0.597 39 H 0.408 0.592 40 H 0.146 0.854 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.251 0.749 46 H 0.057 0.943 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 24.007 3.156 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.344 5.344 4 C 0.346 3.654 5 O -0.409 6.409 6 C -0.086 4.086 7 C -0.138 4.138 8 C -0.104 4.104 9 C -0.211 4.211 10 C 0.072 3.928 11 O -0.201 6.201 12 C -0.040 4.040 13 C 0.302 3.698 14 N -0.419 5.419 15 O -0.388 6.388 16 C -0.107 4.107 17 C -0.185 4.185 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.348 4.348 21 H 0.094 0.906 22 C -0.206 4.206 23 N -0.574 5.574 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.212 1.212 27 H -0.213 1.213 28 C 0.003 3.997 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.232 0.768 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.231 0.769 39 H 0.240 0.760 40 H 0.164 0.836 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.494 23.034 1.886 24.007 hybrid contribution 1.626 0.535 0.076 1.714 sum -4.868 23.569 1.962 24.147 Atomic orbital electron populations 1.21994 0.94283 1.02056 1.02447 1.21507 0.92577 0.80538 0.98391 1.45703 1.53809 1.12700 1.22183 1.18013 0.80332 0.84527 0.82531 1.90735 1.39205 1.76276 1.34691 1.19853 0.99464 0.94256 0.95068 1.21296 0.97827 0.96343 0.98284 1.20850 0.98599 0.93202 0.97796 1.21333 1.03107 1.01189 0.95462 1.18801 0.96406 0.90403 0.87217 1.86181 1.71498 1.21404 1.41003 1.22429 1.00256 0.83774 0.97521 1.20083 0.79856 0.82264 0.87625 1.43649 1.57639 1.13627 1.26964 1.90841 1.36571 1.68538 1.42808 1.20467 1.00830 0.89998 0.99382 1.23236 1.00575 0.98889 0.95816 1.21149 0.89957 0.99836 0.83760 1.44435 1.07835 1.78841 1.01781 1.19025 0.89350 1.37402 0.88996 0.90647 1.24748 0.97710 1.02126 0.96008 1.69938 1.24159 1.54194 1.09148 0.86214 0.81871 0.78311 0.79507 1.21679 1.21219 1.21268 1.21906 0.87532 0.94932 0.95316 0.91778 0.93096 0.90985 0.76765 0.85161 0.85037 0.85318 0.88770 0.88702 0.76889 0.75955 0.83594 0.91804 0.90826 0.93864 0.93651 0.93888 0.92497 0.95640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.58 37.15 0.32 -2.00 16 2 C 0.16 2.81 0.82 -129.67 -0.11 2.71 16 3 N -0.69 -11.62 5.13 -46.55 -0.24 -11.85 16 4 C 0.56 9.92 7.17 -12.32 -0.09 9.83 16 5 O -0.53 -10.95 13.14 5.32 0.07 -10.88 16 6 C -0.08 -1.25 5.87 -104.99 -0.62 -1.86 16 7 C -0.12 -1.43 9.54 -39.17 -0.37 -1.80 16 8 C -0.09 -0.84 10.03 -39.66 -0.40 -1.24 16 9 C -0.19 -1.82 9.03 -39.35 -0.36 -2.18 16 10 C 0.12 1.45 6.68 -39.28 -0.26 1.19 16 11 O -0.29 -3.58 9.67 -39.39 -0.38 -3.96 16 12 C 0.04 0.28 5.22 36.01 0.19 0.47 16 13 C 0.52 4.49 8.18 -10.99 -0.09 4.40 16 14 N -0.85 -3.08 8.87 31.22 0.28 -2.81 16 15 O -0.51 -7.43 17.34 -14.36 -0.25 -7.68 16 16 C -0.09 -1.30 9.53 -39.02 -0.37 -1.67 16 17 C -0.15 -2.60 5.99 -24.89 -0.15 -2.74 16 18 C 0.18 4.21 5.37 -3.06 -0.02 4.19 16 19 N -0.60 -15.67 3.39 -170.06 -0.58 -16.25 16 20 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 23 N -0.93 -27.14 10.31 55.49 0.57 -26.57 16 24 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 C 0.13 2.92 6.10 -2.52 -0.02 2.91 16 29 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 30 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.07 1.23 6.53 -51.93 -0.34 0.89 16 32 H 0.40 5.77 6.52 -40.82 -0.27 5.51 16 33 H 0.13 1.37 6.40 -52.49 -0.34 1.03 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 0.74 6.28 -52.48 -0.33 0.41 16 36 H 0.09 0.39 7.66 -51.93 -0.40 -0.01 16 37 H 0.10 0.44 7.66 -51.93 -0.40 0.05 16 38 H 0.40 0.00 8.83 -40.82 -0.36 -0.36 16 39 H 0.41 1.23 8.93 -40.82 -0.36 0.86 16 40 H 0.15 2.35 7.65 -52.49 -0.40 1.95 16 41 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 42 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 43 H 0.04 1.14 7.52 -51.93 -0.39 0.75 16 44 H 0.05 1.17 7.37 -51.93 -0.38 0.78 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.06 1.39 6.31 -51.93 -0.33 1.07 16 47 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -38.43 384.80 -8.69 -47.12 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.36 Total: 4.08 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -2.59 Total: 5.33 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.03 Total: -57.48 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.56 Total: -22.52 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.43 -8.69 -47.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046362389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.911 kcal (2) G-P(sol) polarization free energy of solvation -38.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds