Wall clock time and date at job start Wed Apr 1 2020 05:24:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46497 * 110.89183 * 2 1
4 4 C 1.34782 * 119.99822 * 297.57543 * 3 2 1
5 5 O 1.21553 * 119.99685 * 359.97438 * 4 3 2
6 6 C 1.47860 * 120.00160 * 179.97438 * 4 3 2
7 7 C 1.39603 * 120.11499 * 359.97438 * 6 4 3
8 8 C 1.37965 * 119.96317 * 180.02562 * 7 6 4
9 9 C 1.38286 * 120.20789 * 0.02562 * 8 7 6
10 10 C 1.38807 * 120.23600 * 359.97438 * 9 8 7
11 11 O 1.35917 * 119.97996 * 179.97438 * 10 9 8
12 12 C 1.42902 * 117.00299 * 0.02562 * 11 10 9
13 13 C 1.50700 * 109.47241 * 179.97438 * 12 11 10
14 14 N 1.34774 * 120.00052 * 179.97438 * 13 12 11
15 15 O 1.21286 * 119.99698 * 359.97438 * 13 12 11
16 16 C 1.38496 * 120.03318 * 359.72146 * 10 9 8
17 17 C 1.55157 * 111.00515 * 123.92556 * 2 1 3
18 18 C 1.54334 * 103.02095 * 153.37497 * 17 2 1
19 19 N 1.47014 * 107.26782 * 338.14225 * 18 17 2
20 20 C 1.36945 * 125.64902 * 178.84833 * 19 18 17
21 21 H 1.07997 * 119.99756 * 179.68982 * 20 19 18
22 22 C 1.38805 * 119.99878 * 359.68887 * 20 19 18
23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19
24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19
25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20
26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20
27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20
28 28 C 1.47428 * 108.70537 * 358.58102 * 19 18 17
29 29 H 1.09002 * 109.47666 * 182.43089 * 1 2 3
30 30 H 1.09008 * 109.47143 * 302.42655 * 1 2 3
31 31 H 1.08999 * 109.47170 * 62.42125 * 1 2 3
32 32 H 0.96991 * 120.00253 * 117.57206 * 3 2 1
33 33 H 1.08002 * 120.01733 * 0.03431 * 7 6 4
34 34 H 1.08002 * 119.89270 * 179.97438 * 8 7 6
35 35 H 1.08003 * 119.87804 * 180.02562 * 9 8 7
36 36 H 1.09003 * 109.46616 * 300.00015 * 12 11 10
37 37 H 1.09000 * 109.46907 * 59.99462 * 12 11 10
38 38 H 0.97001 * 119.99856 * 359.97438 * 14 13 12
39 39 H 0.96996 * 119.99939 * 180.02562 * 14 13 12
40 40 H 1.07995 * 120.10166 * 180.27380 * 16 10 9
41 41 H 1.08998 * 110.71770 * 271.93665 * 17 2 1
42 42 H 1.09002 * 110.71853 * 35.03099 * 17 2 1
43 43 H 1.08998 * 109.99457 * 218.65928 * 18 17 2
44 44 H 1.09007 * 109.77698 * 97.49747 * 18 17 2
45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20
46 46 H 1.09003 * 110.36579 * 143.19056 * 28 19 18
47 47 H 1.08993 * 110.36917 * 265.41008 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0523 1.3687 0.0000
4 6 1.7878 2.1909 -1.0347
5 8 1.1162 1.7966 -1.9679
6 6 2.3146 3.5725 -1.0345
7 6 3.0857 4.0280 0.0364
8 6 3.5752 5.3179 0.0336
9 6 3.3041 6.1626 -1.0272
10 6 2.5382 5.7186 -2.0963
11 8 2.2745 6.5534 -3.1359
12 6 2.8175 7.8732 -3.0621
13 6 2.4244 8.6478 -4.2936
14 7 2.8262 9.9255 -4.4428
15 8 1.7463 8.1212 -5.1503
16 6 2.0472 4.4236 -2.1066
17 6 2.0861 -0.8084 1.2019
18 6 3.4656 -1.2798 0.6953
19 7 3.4270 -1.2429 -0.7738
20 6 4.4639 -1.5663 -1.6079
21 1 4.3330 -1.5113 -2.6785
22 6 5.6830 -1.9647 -1.0772
23 7 5.8424 -2.0322 0.2276
24 14 7.0972 -2.4066 -2.2150
25 1 8.2802 -2.7959 -1.4061
26 1 6.6966 -3.5413 -3.0850
27 1 7.4393 -1.2330 -3.0582
28 6 2.0851 -0.8063 -1.2007
29 1 -0.3634 -1.0267 0.0436
30 1 -0.3634 0.5511 0.8675
31 1 -0.3633 0.4758 -0.9109
32 1 2.5885 1.6831 0.7446
33 1 3.2991 3.3709 0.8665
34 1 4.1714 5.6692 0.8628
35 1 3.6903 7.1712 -1.0241
36 1 2.4296 8.3766 -2.1765
37 1 3.9043 7.8160 -3.0008
38 1 3.3682 10.3467 -3.7574
39 1 2.5729 10.4241 -5.2353
40 1 1.4549 4.0756 -2.9399
41 1 2.1921 -0.1708 2.0795
42 1 1.4450 -1.6619 1.4223
43 1 3.6600 -2.2969 1.0357
44 1 4.2424 -0.6090 1.0627
45 1 6.6943 -2.3110 0.5983
46 1 2.1559 -0.1713 -2.0838
47 1 1.4523 -1.6699 -1.4050
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001046362389.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:24:48
Heat of formation + Delta-G solvation = -48.031584 kcal
Electronic energy + Delta-G solvation = -30329.476251 eV
Core-core repulsion = 26092.713571 eV
Total energy + Delta-G solvation = -4236.762680 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.76367 -40.01187 -39.22703 -37.63630 -36.73671 -34.22965 -33.95582 -32.15295
-31.29845 -30.59459 -29.60466 -28.61972 -28.45512 -25.63482 -24.35935 -23.42854
-22.58442 -21.60094 -20.61096 -20.12762 -19.10407 -18.67620 -18.11140 -17.22177
-16.74221 -16.71818 -16.38825 -16.13198 -15.64473 -15.25406 -14.78426 -14.60991
-14.48605 -14.31151 -14.08383 -13.75488 -13.69230 -13.24135 -13.01170 -12.79325
-12.68508 -12.11597 -12.00033 -11.83425 -11.77099 -11.61958 -11.36298 -11.26149
-10.86127 -10.83236 -10.40743 -10.37539 -10.33116 -10.24512 -10.07319 -9.96517
-9.61004 -9.31806 -9.13429 -8.60862 -8.50641 -8.43057 -6.75302 -5.66446
-2.97872 0.77654 1.26739 2.08745 2.27001 3.01589 3.30022 3.44922
3.48343 3.50390 3.59282 3.90390 4.22598 4.44069 4.54324 4.55287
4.62453 4.64349 4.91301 4.99555 5.13833 5.27661 5.37389 5.42869
5.52262 5.65281 5.75720 5.78949 5.99804 6.05500 6.15135 6.18702
6.19984 6.21636 6.26661 6.38848 6.40468 6.43282 6.58259 6.70998
6.71954 6.88911 7.10759 7.17227 7.58588 7.59775 7.72000 7.83891
7.91744 8.30818 8.58211 9.28452 9.88388 10.54425 11.45657
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.011596 B = 0.002600 C = 0.002351
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2414.115935 B =10767.815093 C =11905.516396
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.156 3.844
3 N -0.694 5.694
4 C 0.560 3.440
5 O -0.531 6.531
6 C -0.083 4.083
7 C -0.119 4.119
8 C -0.086 4.086
9 C -0.192 4.192
10 C 0.117 3.883
11 O -0.288 6.288
12 C 0.039 3.961
13 C 0.519 3.481
14 N -0.852 5.852
15 O -0.514 6.514
16 C -0.087 4.087
17 C -0.146 4.146
18 C 0.178 3.822
19 N -0.603 5.603
20 C -0.219 4.219
21 H 0.076 0.924
22 C -0.010 4.010
23 N -0.926 5.926
24 Si 0.910 3.090
25 H -0.291 1.291
26 H -0.286 1.286
27 H -0.286 1.286
28 C 0.130 3.870
29 H 0.063 0.937
30 H 0.050 0.950
31 H 0.071 0.929
32 H 0.397 0.603
33 H 0.131 0.869
34 H 0.132 0.868
35 H 0.129 0.871
36 H 0.094 0.906
37 H 0.095 0.905
38 H 0.403 0.597
39 H 0.408 0.592
40 H 0.146 0.854
41 H 0.063 0.937
42 H 0.073 0.927
43 H 0.043 0.957
44 H 0.045 0.955
45 H 0.251 0.749
46 H 0.057 0.943
47 H 0.026 0.974
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.676 24.007 3.156 24.870
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.070 3.930
3 N -0.344 5.344
4 C 0.346 3.654
5 O -0.409 6.409
6 C -0.086 4.086
7 C -0.138 4.138
8 C -0.104 4.104
9 C -0.211 4.211
10 C 0.072 3.928
11 O -0.201 6.201
12 C -0.040 4.040
13 C 0.302 3.698
14 N -0.419 5.419
15 O -0.388 6.388
16 C -0.107 4.107
17 C -0.185 4.185
18 C 0.053 3.947
19 N -0.329 5.329
20 C -0.348 4.348
21 H 0.094 0.906
22 C -0.206 4.206
23 N -0.574 5.574
24 Si 0.741 3.259
25 H -0.217 1.217
26 H -0.212 1.212
27 H -0.213 1.213
28 C 0.003 3.997
29 H 0.082 0.918
30 H 0.069 0.931
31 H 0.090 0.910
32 H 0.232 0.768
33 H 0.148 0.852
34 H 0.150 0.850
35 H 0.147 0.853
36 H 0.112 0.888
37 H 0.113 0.887
38 H 0.231 0.769
39 H 0.240 0.760
40 H 0.164 0.836
41 H 0.082 0.918
42 H 0.092 0.908
43 H 0.061 0.939
44 H 0.063 0.937
45 H 0.061 0.939
46 H 0.075 0.925
47 H 0.044 0.956
Dipole moment (debyes) X Y Z Total
from point charges -6.494 23.034 1.886 24.007
hybrid contribution 1.626 0.535 0.076 1.714
sum -4.868 23.569 1.962 24.147
Atomic orbital electron populations
1.21994 0.94283 1.02056 1.02447 1.21507 0.92577 0.80538 0.98391
1.45703 1.53809 1.12700 1.22183 1.18013 0.80332 0.84527 0.82531
1.90735 1.39205 1.76276 1.34691 1.19853 0.99464 0.94256 0.95068
1.21296 0.97827 0.96343 0.98284 1.20850 0.98599 0.93202 0.97796
1.21333 1.03107 1.01189 0.95462 1.18801 0.96406 0.90403 0.87217
1.86181 1.71498 1.21404 1.41003 1.22429 1.00256 0.83774 0.97521
1.20083 0.79856 0.82264 0.87625 1.43649 1.57639 1.13627 1.26964
1.90841 1.36571 1.68538 1.42808 1.20467 1.00830 0.89998 0.99382
1.23236 1.00575 0.98889 0.95816 1.21149 0.89957 0.99836 0.83760
1.44435 1.07835 1.78841 1.01781 1.19025 0.89350 1.37402 0.88996
0.90647 1.24748 0.97710 1.02126 0.96008 1.69938 1.24159 1.54194
1.09148 0.86214 0.81871 0.78311 0.79507 1.21679 1.21219 1.21268
1.21906 0.87532 0.94932 0.95316 0.91778 0.93096 0.90985 0.76765
0.85161 0.85037 0.85318 0.88770 0.88702 0.76889 0.75955 0.83594
0.91804 0.90826 0.93864 0.93651 0.93888 0.92497 0.95640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.32 8.58 37.15 0.32 -2.00 16
2 C 0.16 2.81 0.82 -129.67 -0.11 2.71 16
3 N -0.69 -11.62 5.13 -46.55 -0.24 -11.85 16
4 C 0.56 9.92 7.17 -12.32 -0.09 9.83 16
5 O -0.53 -10.95 13.14 5.32 0.07 -10.88 16
6 C -0.08 -1.25 5.87 -104.99 -0.62 -1.86 16
7 C -0.12 -1.43 9.54 -39.17 -0.37 -1.80 16
8 C -0.09 -0.84 10.03 -39.66 -0.40 -1.24 16
9 C -0.19 -1.82 9.03 -39.35 -0.36 -2.18 16
10 C 0.12 1.45 6.68 -39.28 -0.26 1.19 16
11 O -0.29 -3.58 9.67 -39.39 -0.38 -3.96 16
12 C 0.04 0.28 5.22 36.01 0.19 0.47 16
13 C 0.52 4.49 8.18 -10.99 -0.09 4.40 16
14 N -0.85 -3.08 8.87 31.22 0.28 -2.81 16
15 O -0.51 -7.43 17.34 -14.36 -0.25 -7.68 16
16 C -0.09 -1.30 9.53 -39.02 -0.37 -1.67 16
17 C -0.15 -2.60 5.99 -24.89 -0.15 -2.74 16
18 C 0.18 4.21 5.37 -3.06 -0.02 4.19 16
19 N -0.60 -15.67 3.39 -170.06 -0.58 -16.25 16
20 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16
21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16
22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16
23 N -0.93 -27.14 10.31 55.49 0.57 -26.57 16
24 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16
25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16
28 C 0.13 2.92 6.10 -2.52 -0.02 2.91 16
29 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16
30 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16
31 H 0.07 1.23 6.53 -51.93 -0.34 0.89 16
32 H 0.40 5.77 6.52 -40.82 -0.27 5.51 16
33 H 0.13 1.37 6.40 -52.49 -0.34 1.03 16
34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
35 H 0.13 0.74 6.28 -52.48 -0.33 0.41 16
36 H 0.09 0.39 7.66 -51.93 -0.40 -0.01 16
37 H 0.10 0.44 7.66 -51.93 -0.40 0.05 16
38 H 0.40 0.00 8.83 -40.82 -0.36 -0.36 16
39 H 0.41 1.23 8.93 -40.82 -0.36 0.86 16
40 H 0.15 2.35 7.65 -52.49 -0.40 1.95 16
41 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16
42 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16
43 H 0.04 1.14 7.52 -51.93 -0.39 0.75 16
44 H 0.05 1.17 7.37 -51.93 -0.38 0.78 16
45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
46 H 0.06 1.39 6.31 -51.93 -0.33 1.07 16
47 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16
LS Contribution 384.80 15.07 5.80 5.80
Total: -1.00 -38.43 384.80 -8.69 -47.12
By element:
Atomic # 1 Polarization: 10.44 SS G_CDS: -6.36 Total: 4.08 kcal
Atomic # 6 Polarization: 7.92 SS G_CDS: -2.59 Total: 5.33 kcal
Atomic # 7 Polarization: -57.52 SS G_CDS: 0.03 Total: -57.48 kcal
Atomic # 8 Polarization: -21.96 SS G_CDS: -0.56 Total: -22.52 kcal
Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -38.43 -8.69 -47.12 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046362389.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.911 kcal
(2) G-P(sol) polarization free energy of solvation -38.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.337 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds