Wall clock time and date at job start Wed Apr 1 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 110.89183 * 2 1 4 4 C 1.34782 * 119.99822 * 297.57543 * 3 2 1 5 5 O 1.21553 * 119.99685 * 359.97438 * 4 3 2 6 6 C 1.47860 * 120.00160 * 179.97438 * 4 3 2 7 7 C 1.39603 * 120.11499 * 359.97438 * 6 4 3 8 8 C 1.37965 * 119.96317 * 180.02562 * 7 6 4 9 9 C 1.38286 * 120.20789 * 0.02562 * 8 7 6 10 10 C 1.38807 * 120.23600 * 359.97438 * 9 8 7 11 11 O 1.35917 * 119.97996 * 179.97438 * 10 9 8 12 12 C 1.42902 * 117.00299 * 0.02562 * 11 10 9 13 13 C 1.50700 * 109.47241 * 179.97438 * 12 11 10 14 14 N 1.34774 * 120.00052 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99698 * 359.97438 * 13 12 11 16 16 C 1.38496 * 120.03318 * 359.72146 * 10 9 8 17 17 C 1.55157 * 111.00515 * 123.92556 * 2 1 3 18 18 C 1.54334 * 103.02095 * 153.37497 * 17 2 1 19 19 N 1.47014 * 107.26782 * 338.14225 * 18 17 2 20 20 C 1.36945 * 125.64902 * 178.84833 * 19 18 17 21 21 H 1.07997 * 119.99756 * 179.68982 * 20 19 18 22 22 C 1.38805 * 119.99878 * 359.68887 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47428 * 108.70537 * 358.58102 * 19 18 17 29 29 H 1.09002 * 109.47666 * 182.43089 * 1 2 3 30 30 H 1.09008 * 109.47143 * 302.42655 * 1 2 3 31 31 H 1.08999 * 109.47170 * 62.42125 * 1 2 3 32 32 H 0.96991 * 120.00253 * 117.57206 * 3 2 1 33 33 H 1.08002 * 120.01733 * 0.03431 * 7 6 4 34 34 H 1.08002 * 119.89270 * 179.97438 * 8 7 6 35 35 H 1.08003 * 119.87804 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46616 * 300.00015 * 12 11 10 37 37 H 1.09000 * 109.46907 * 59.99462 * 12 11 10 38 38 H 0.97001 * 119.99856 * 359.97438 * 14 13 12 39 39 H 0.96996 * 119.99939 * 180.02562 * 14 13 12 40 40 H 1.07995 * 120.10166 * 180.27380 * 16 10 9 41 41 H 1.08998 * 110.71770 * 271.93665 * 17 2 1 42 42 H 1.09002 * 110.71853 * 35.03099 * 17 2 1 43 43 H 1.08998 * 109.99457 * 218.65928 * 18 17 2 44 44 H 1.09007 * 109.77698 * 97.49747 * 18 17 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 46 46 H 1.09003 * 110.36579 * 143.19056 * 28 19 18 47 47 H 1.08993 * 110.36917 * 265.41008 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 -1.0347 5 8 1.1162 1.7966 -1.9679 6 6 2.3146 3.5725 -1.0345 7 6 3.0857 4.0280 0.0364 8 6 3.5752 5.3179 0.0336 9 6 3.3041 6.1626 -1.0272 10 6 2.5382 5.7186 -2.0963 11 8 2.2745 6.5534 -3.1359 12 6 2.8175 7.8732 -3.0621 13 6 2.4244 8.6478 -4.2936 14 7 2.8262 9.9255 -4.4428 15 8 1.7463 8.1212 -5.1503 16 6 2.0472 4.4236 -2.1066 17 6 2.0861 -0.8084 1.2019 18 6 3.4656 -1.2798 0.6953 19 7 3.4270 -1.2429 -0.7738 20 6 4.4639 -1.5663 -1.6079 21 1 4.3330 -1.5113 -2.6785 22 6 5.6830 -1.9647 -1.0772 23 7 5.8424 -2.0322 0.2276 24 14 7.0972 -2.4066 -2.2150 25 1 8.2802 -2.7959 -1.4061 26 1 6.6966 -3.5413 -3.0850 27 1 7.4393 -1.2330 -3.0582 28 6 2.0851 -0.8063 -1.2007 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3634 0.5511 0.8675 31 1 -0.3633 0.4758 -0.9109 32 1 2.5885 1.6831 0.7446 33 1 3.2991 3.3709 0.8665 34 1 4.1714 5.6692 0.8628 35 1 3.6903 7.1712 -1.0241 36 1 2.4296 8.3766 -2.1765 37 1 3.9043 7.8160 -3.0008 38 1 3.3682 10.3467 -3.7574 39 1 2.5729 10.4241 -5.2353 40 1 1.4549 4.0756 -2.9399 41 1 2.1921 -0.1708 2.0795 42 1 1.4450 -1.6619 1.4223 43 1 3.6600 -2.2969 1.0357 44 1 4.2424 -0.6090 1.0627 45 1 6.6943 -2.3110 0.5983 46 1 2.1559 -0.1713 -2.0838 47 1 1.4523 -1.6699 -1.4050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046362389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:47 Heat of formation + Delta-G solvation = -78.326639 kcal Electronic energy + Delta-G solvation = -30330.789944 eV Core-core repulsion = 26092.713571 eV Total energy + Delta-G solvation = -4238.076372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72403 -41.12931 -40.14221 -38.98598 -37.88897 -35.72392 -34.81128 -33.81632 -32.37484 -31.90960 -30.91470 -30.24489 -29.12487 -27.52412 -25.71409 -24.94073 -23.47590 -22.57447 -22.06395 -21.39666 -20.49916 -19.77695 -18.86673 -18.64796 -17.88231 -17.38687 -17.35712 -17.08491 -16.91471 -16.68590 -16.24423 -16.09164 -15.62195 -15.58601 -15.36432 -14.91761 -14.82571 -14.66532 -14.18849 -13.92022 -13.85009 -13.61039 -13.54058 -13.32842 -13.10265 -12.83075 -12.79638 -12.75441 -12.21772 -12.13319 -12.09062 -12.05334 -11.97154 -11.70276 -11.54716 -11.13839 -10.76475 -10.75506 -10.70349 -10.15639 -9.93423 -9.32255 -8.86175 -7.85915 -5.19367 -0.20492 0.37210 1.42592 1.45336 1.47104 1.51874 1.62104 1.86297 2.20426 2.47929 2.84077 2.84381 3.31575 3.52594 3.67896 3.71022 3.76288 3.91693 4.02380 4.04926 4.11182 4.13120 4.16723 4.19638 4.33336 4.49643 4.65373 4.69020 4.79024 4.86576 4.87919 4.93510 5.03181 5.08339 5.17180 5.28436 5.34176 5.37989 5.41828 5.57466 5.64650 5.70154 5.77937 5.81420 6.20441 6.24290 6.43720 6.60451 7.12199 7.25687 7.25859 7.77201 8.41656 9.23605 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.002600 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.115935 B =10767.815093 C =11905.516396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.166 3.834 3 N -0.689 5.689 4 C 0.553 3.447 5 O -0.573 6.573 6 C -0.107 4.107 7 C -0.122 4.122 8 C -0.076 4.076 9 C -0.171 4.171 10 C 0.113 3.887 11 O -0.324 6.324 12 C 0.030 3.970 13 C 0.514 3.486 14 N -0.824 5.824 15 O -0.588 6.588 16 C -0.121 4.121 17 C -0.127 4.127 18 C 0.185 3.815 19 N -0.620 5.620 20 C -0.244 4.244 21 H 0.064 0.936 22 C -0.057 4.057 23 N -0.943 5.943 24 Si 0.973 3.027 25 H -0.286 1.286 26 H -0.282 1.282 27 H -0.283 1.283 28 C 0.126 3.874 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.409 0.591 33 H 0.145 0.855 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.424 0.576 39 H 0.413 0.587 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.010 0.990 44 H 0.021 0.979 45 H 0.249 0.751 46 H 0.027 0.973 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 27.014 5.794 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.079 3.921 3 N -0.340 5.340 4 C 0.341 3.659 5 O -0.454 6.454 6 C -0.111 4.111 7 C -0.141 4.141 8 C -0.093 4.093 9 C -0.190 4.190 10 C 0.068 3.932 11 O -0.237 6.237 12 C -0.047 4.047 13 C 0.298 3.702 14 N -0.391 5.391 15 O -0.467 6.467 16 C -0.140 4.140 17 C -0.165 4.165 18 C 0.060 3.940 19 N -0.347 5.347 20 C -0.373 4.373 21 H 0.082 0.918 22 C -0.250 4.250 23 N -0.592 5.592 24 Si 0.801 3.199 25 H -0.211 1.211 26 H -0.208 1.208 27 H -0.209 1.209 28 C 0.000 4.000 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.246 0.754 33 H 0.162 0.838 34 H 0.192 0.808 35 H 0.196 0.804 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.257 0.743 39 H 0.246 0.754 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.028 0.972 44 H 0.039 0.961 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.161 26.116 4.575 27.012 hybrid contribution 1.272 -0.261 -0.798 1.524 sum -3.889 25.855 3.776 26.417 Atomic orbital electron populations 1.21921 0.91938 1.03232 1.02750 1.21387 0.94126 0.80667 0.95942 1.45647 1.53834 1.12020 1.22477 1.18572 0.79618 0.85789 0.81892 1.90704 1.41152 1.77373 1.36175 1.19667 1.01794 0.92781 0.96814 1.21544 0.97104 0.97970 0.97470 1.21364 0.97432 0.91785 0.98748 1.21847 1.00548 1.03166 0.93393 1.18815 0.96643 0.89473 0.88250 1.86142 1.72405 1.23663 1.41504 1.22871 1.02211 0.81574 0.98080 1.20529 0.78946 0.83334 0.87382 1.43458 1.56167 1.11949 1.27490 1.90819 1.40207 1.70366 1.45326 1.20359 1.02522 0.92115 0.99048 1.23116 0.96866 1.00019 0.96518 1.20966 0.93006 0.97515 0.82485 1.44675 1.08403 1.78811 1.02773 1.19248 0.90828 1.38052 0.89168 0.91840 1.25489 0.99771 1.02193 0.97569 1.70126 1.24378 1.54398 1.10288 0.85250 0.78869 0.77995 0.77793 1.21104 1.20791 1.20894 1.22002 0.86475 0.95037 0.96533 0.90395 0.90215 0.92994 0.75355 0.83781 0.80779 0.80389 0.84799 0.85353 0.74317 0.75407 0.87054 0.88025 0.88859 0.97218 0.96105 0.94190 0.95442 0.95788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.58 71.98 0.62 -3.58 16 2 C 0.17 5.91 0.82 5.00 0.00 5.92 16 3 N -0.69 -23.06 5.13 -419.45 -2.15 -25.21 16 4 C 0.55 20.52 7.17 86.79 0.62 21.14 16 5 O -0.57 -25.53 13.14 -3.88 -0.05 -25.58 16 6 C -0.11 -3.30 5.87 -20.10 -0.12 -3.42 16 7 C -0.12 -2.69 9.54 22.53 0.21 -2.48 16 8 C -0.08 -1.14 10.03 22.22 0.22 -0.91 16 9 C -0.17 -2.51 9.03 22.42 0.20 -2.30 16 10 C 0.11 2.71 6.68 22.47 0.15 2.86 16 11 O -0.32 -7.93 9.67 -73.57 -0.71 -8.64 16 12 C 0.03 0.34 5.22 71.24 0.37 0.71 16 13 C 0.51 8.26 8.18 87.66 0.72 8.97 16 14 N -0.82 -3.93 8.87 -173.53 -1.54 -5.47 16 15 O -0.59 -17.69 17.34 15.99 0.28 -17.41 16 16 C -0.12 -3.82 9.53 22.63 0.22 -3.60 16 17 C -0.13 -4.28 5.99 31.79 0.19 -4.09 16 18 C 0.18 8.88 5.37 86.73 0.47 9.34 16 19 N -0.62 -33.39 3.39 -691.96 -2.35 -35.74 16 20 C -0.24 -14.55 10.28 84.03 0.86 -13.69 16 21 H 0.06 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 23 N -0.94 -56.26 10.31 21.65 0.22 -56.03 16 24 Si 0.97 47.39 29.55 68.60 2.03 49.41 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 28 C 0.13 5.89 6.10 86.86 0.53 6.42 16 29 H 0.08 2.11 8.11 -2.39 -0.02 2.09 16 30 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.05 1.80 6.53 -2.39 -0.02 1.78 16 32 H 0.41 11.41 6.52 -92.71 -0.60 10.80 16 33 H 0.14 2.67 6.40 -2.91 -0.02 2.65 16 34 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.18 0.79 6.28 -2.91 -0.02 0.77 16 36 H 0.13 0.44 7.66 -2.39 -0.02 0.42 16 37 H 0.13 0.59 7.66 -2.39 -0.02 0.57 16 38 H 0.42 -1.65 8.83 -92.71 -0.82 -2.47 16 39 H 0.41 1.75 8.93 -92.71 -0.83 0.92 16 40 H 0.11 4.13 7.65 -2.91 -0.02 4.11 16 41 H 0.10 2.71 8.05 -2.39 -0.02 2.69 16 42 H 0.09 2.84 8.01 -2.39 -0.02 2.82 16 43 H 0.01 0.52 7.52 -2.39 -0.02 0.50 16 44 H 0.02 1.08 7.37 -2.38 -0.02 1.07 16 45 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 46 H 0.03 1.43 6.31 -2.39 -0.02 1.42 16 47 H 0.02 1.13 8.04 -2.39 -0.02 1.11 16 Total: -1.00 -93.17 384.80 0.26 -92.91 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -1.21 Total: 13.32 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 5.74 Total: 18.44 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -5.82 Total: -122.45 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -0.49 Total: -51.63 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -93.17 0.26 -92.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046362389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.582 kcal (2) G-P(sol) polarization free energy of solvation -93.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds