Wall clock time and date at job start Wed Apr 1 2020 05:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21620 * 119.99738 * 359.97438 * 4 3 2 6 6 C 1.47292 * 119.99868 * 180.02562 * 4 3 2 7 7 C 1.36582 * 127.53437 * 0.02562 * 6 4 3 8 8 O 1.34099 * 108.89715 * 179.88299 * 7 6 4 9 9 C 1.33383 * 111.28972 * 359.73101 * 8 7 6 10 10 C 1.36173 * 108.07444 * 0.28189 * 9 8 7 11 11 C 1.47706 * 122.28608 * 178.61770 * 10 9 8 12 12 O 1.21621 * 122.50008 * 224.08112 * 11 10 9 13 13 N 1.35716 * 115.15156 * 44.27213 * 11 10 9 14 14 C 1.45352 * 119.12343 * 14.05685 * 13 11 10 15 15 C 1.52867 * 113.82125 * 273.80536 * 14 13 11 16 16 C 1.50539 * 128.62302 * 181.01275 * 9 8 7 17 17 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 18 18 C 1.54321 * 102.96961 * 206.45980 * 17 2 1 19 19 N 1.47026 * 107.26791 * 22.19024 * 18 17 2 20 20 C 1.36940 * 125.64258 * 181.03445 * 19 18 17 21 21 H 1.08003 * 119.99660 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00559 * 0.02875 * 20 19 18 23 23 N 1.31617 * 119.99776 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00230 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46764 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46723 * 120.00066 * 24 22 20 27 27 H 1.48499 * 109.47140 * 239.99844 * 24 22 20 28 28 C 1.47419 * 108.70576 * 1.06162 * 19 18 17 29 29 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 30 30 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 31 31 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 32 32 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 33 33 H 1.08001 * 125.55180 * 359.86709 * 7 6 4 34 34 H 0.96994 * 120.44215 * 194.08087 * 13 11 10 35 35 H 1.09003 * 108.61055 * 152.68235 * 14 13 11 36 36 H 1.08995 * 108.60888 * 34.92874 * 14 13 11 37 37 H 1.09000 * 109.46453 * 284.33098 * 15 14 13 38 38 H 1.08996 * 109.46507 * 164.35279 * 15 14 13 39 39 H 1.08994 * 109.44653 * 229.06061 * 16 9 8 40 40 H 1.08999 * 109.44514 * 348.97876 * 16 9 8 41 41 H 1.08998 * 110.70855 * 88.08785 * 17 2 1 42 42 H 1.08998 * 110.85957 * 324.90400 * 17 2 1 43 43 H 1.08998 * 109.88101 * 262.77542 * 18 17 2 44 44 H 1.09000 * 109.88483 * 141.60664 * 18 17 2 45 45 H 0.97004 * 120.00521 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.36926 * 94.70918 * 28 19 18 47 47 H 1.08995 * 110.36556 * 216.92202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1167 1.7966 1.9685 6 6 2.3145 3.5667 1.0346 7 6 3.0786 4.1655 0.0739 8 8 3.3447 5.4241 0.4525 9 6 2.7856 5.7039 1.6307 10 6 2.1265 4.5923 2.0602 11 6 1.4163 4.5469 3.3545 12 8 1.4997 3.5997 4.1127 13 7 0.6596 5.6378 3.6357 14 6 0.3548 6.5806 2.5723 15 6 1.4278 7.6503 2.3692 16 6 2.8170 6.9959 2.4026 17 6 2.0901 -0.8107 -1.2023 18 6 3.4707 -1.2757 -0.6934 19 7 3.4280 -1.2429 0.7759 20 6 4.4639 -1.5649 1.6117 21 1 4.3314 -1.5089 2.6821 22 6 5.6841 -1.9633 1.0833 23 7 5.8454 -2.0320 -0.2211 24 14 7.0973 -2.4018 2.2235 25 1 6.6619 -2.2444 3.6345 26 1 7.5061 -3.8096 1.9861 27 1 8.2469 -1.5007 1.9562 28 6 2.0853 -0.8066 1.2002 29 1 -0.3633 0.4753 0.9111 30 1 -0.3634 0.5514 -0.8672 31 1 -0.3633 -1.0268 -0.0440 32 1 2.5890 1.6829 -0.7448 33 1 3.4141 3.7010 -0.8416 34 1 0.3268 5.7866 4.5346 35 1 -0.5889 7.0742 2.8049 36 1 0.2343 6.0274 1.6410 37 1 1.3564 8.3920 3.1648 38 1 1.2782 8.1364 1.4052 39 1 3.0985 6.7944 3.4362 40 1 3.5464 7.6696 1.9530 41 1 2.1972 -0.1737 -2.0803 42 1 1.4525 -1.6665 -1.4240 43 1 4.2461 -0.6014 -1.0569 44 1 3.6693 -2.2913 -1.0359 45 1 6.6982 -2.3100 -0.5905 46 1 1.4520 -1.6704 1.4024 47 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046496242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:59 Heat of formation + Delta-G solvation = -19.497709 kcal Electronic energy + Delta-G solvation = -31899.156282 eV Core-core repulsion = 27663.630923 eV Total energy + Delta-G solvation = -4235.525359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.99117 -39.60290 -39.48872 -37.12299 -36.66645 -33.87924 -33.05149 -33.00934 -31.73599 -30.29931 -29.54610 -28.60660 -26.47616 -25.60032 -24.55658 -23.76837 -23.20179 -21.77242 -20.37645 -20.03825 -19.61402 -18.81537 -17.53940 -17.38580 -16.81291 -16.59199 -16.43419 -15.58439 -15.40642 -15.27163 -14.78707 -14.56405 -14.38294 -14.12512 -13.95369 -13.61497 -13.48992 -13.27153 -13.09848 -12.86909 -12.67933 -12.15795 -12.01707 -11.85309 -11.74707 -11.70121 -11.58189 -11.38708 -10.84654 -10.81747 -10.35133 -10.30833 -10.06985 -9.98994 -9.94261 -9.80025 -9.57798 -9.27274 -9.24016 -8.75622 -8.57127 -8.45380 -6.71986 -5.63910 -2.94784 1.21771 1.41783 2.42133 2.81835 3.23373 3.42577 3.45680 3.51705 3.55298 3.73196 4.18997 4.31727 4.41339 4.47609 4.58337 4.65654 4.83807 4.97908 5.08792 5.10855 5.24367 5.28567 5.39954 5.45818 5.46852 5.54142 5.57221 5.67727 5.75417 5.77830 5.92462 6.06137 6.18155 6.20939 6.40881 6.44472 6.60433 6.70225 6.74875 6.82271 6.95208 7.00093 7.22243 7.61403 7.61980 7.87578 7.96042 8.22694 8.33440 8.67926 9.31715 9.91426 10.57350 11.48432 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003399 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.645011 B = 8235.486728 C = 8938.345225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 N -0.698 5.698 4 C 0.581 3.419 5 O -0.510 6.510 6 C -0.170 4.170 7 C 0.011 3.989 8 O -0.158 6.158 9 C 0.028 3.972 10 C -0.190 4.190 11 C 0.592 3.408 12 O -0.485 6.485 13 N -0.735 5.735 14 C 0.108 3.892 15 C -0.134 4.134 16 C -0.041 4.041 17 C -0.146 4.146 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.216 4.216 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.926 5.926 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.130 3.870 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.393 0.607 33 H 0.219 0.781 34 H 0.403 0.597 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.249 0.751 46 H 0.025 0.975 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 22.672 -2.486 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.072 3.928 3 N -0.349 5.349 4 C 0.366 3.634 5 O -0.386 6.386 6 C -0.175 4.175 7 C -0.058 4.058 8 O -0.052 6.052 9 C -0.024 4.024 10 C -0.195 4.195 11 C 0.378 3.622 12 O -0.357 6.357 13 N -0.391 5.391 14 C -0.018 4.018 15 C -0.173 4.173 16 C -0.078 4.078 17 C -0.184 4.184 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.345 4.345 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.575 5.575 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.003 3.997 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.227 0.773 33 H 0.235 0.765 34 H 0.239 0.761 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.091 21.906 -1.735 24.615 hybrid contribution 1.113 -0.213 0.352 1.187 sum -9.978 21.692 -1.382 23.917 Atomic orbital electron populations 1.21980 0.94357 1.01996 1.02337 1.21524 0.92471 0.80428 0.98352 1.45610 1.54463 1.12847 1.21959 1.17021 0.80610 0.83050 0.82674 1.90828 1.38248 1.75607 1.33871 1.21050 1.04961 0.95796 0.95709 1.24618 0.99205 0.81583 1.00411 1.83534 1.59440 1.29920 1.32334 1.22580 0.97293 0.97023 0.85495 1.20932 1.07076 0.93491 0.98033 1.17640 0.78022 0.81556 0.84989 1.90924 1.61292 1.32014 1.51425 1.45696 1.55658 1.24488 1.13216 1.21124 0.97627 0.91063 0.92000 1.22251 0.93089 0.98355 1.03636 1.20274 0.99244 0.89619 0.98645 1.23275 1.00543 0.98842 0.95759 1.21145 0.89892 0.99862 0.83792 1.44447 1.07841 1.78814 1.01765 1.19148 0.89331 1.36886 0.89085 0.90528 1.24735 0.97676 1.02240 0.96009 1.69955 1.23861 1.54536 1.09176 0.86065 0.82454 0.77623 0.79875 1.20509 1.21842 1.21909 1.21903 0.87446 0.94921 0.95446 0.91060 0.93173 0.91814 0.77329 0.76492 0.76067 0.89921 0.90810 0.89897 0.89754 0.88514 0.89044 0.91863 0.90841 0.93729 0.93850 0.94048 0.95725 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.60 37.16 0.32 -2.05 16 2 C 0.16 2.93 0.83 -129.51 -0.11 2.82 16 3 N -0.70 -11.89 5.17 -46.58 -0.24 -12.13 16 4 C 0.58 10.87 7.20 -12.58 -0.09 10.78 16 5 O -0.51 -11.43 12.56 -4.10 -0.05 -11.48 16 6 C -0.17 -2.66 6.32 -103.60 -0.65 -3.31 16 7 C 0.01 0.13 11.61 30.13 0.35 0.48 16 8 O -0.16 -1.77 10.48 8.64 0.09 -1.67 16 9 C 0.03 0.31 6.38 -35.13 -0.22 0.09 16 10 C -0.19 -2.80 4.96 -103.55 -0.51 -3.31 16 11 C 0.59 9.29 7.30 -11.97 -0.09 9.21 16 12 O -0.49 -10.19 17.11 -4.10 -0.07 -10.26 16 13 N -0.73 -7.39 5.26 -61.89 -0.33 -7.71 16 14 C 0.11 0.72 5.99 -4.73 -0.03 0.69 16 15 C -0.13 -0.62 6.32 -26.49 -0.17 -0.79 16 16 C -0.04 -0.28 5.65 -27.65 -0.16 -0.44 16 17 C -0.15 -2.61 6.00 -24.74 -0.15 -2.76 16 18 C 0.18 4.27 5.36 -3.06 -0.02 4.25 16 19 N -0.60 -16.04 3.39 -170.08 -0.58 -16.62 16 20 C -0.22 -6.37 10.28 -15.06 -0.15 -6.53 16 21 H 0.08 2.28 7.83 -52.48 -0.41 1.86 16 22 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 23 N -0.93 -27.51 10.31 55.49 0.57 -26.93 16 24 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 C 0.13 3.02 6.10 -2.53 -0.02 3.01 16 29 H 0.07 1.27 6.53 -51.93 -0.34 0.93 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 32 H 0.39 5.58 7.49 -40.82 -0.31 5.28 16 33 H 0.22 1.74 7.49 -52.49 -0.39 1.35 16 34 H 0.40 3.32 8.95 -40.82 -0.37 2.95 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.62 6.93 -51.93 -0.36 0.26 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 42 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 43 H 0.04 1.16 7.38 -51.93 -0.38 0.77 16 44 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 47 H 0.06 1.52 6.31 -51.93 -0.33 1.19 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -39.15 375.27 -8.38 -47.53 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.62 Total: 3.78 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -1.79 Total: 11.70 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -0.57 Total: -63.39 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.03 Total: -23.41 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.15 -8.38 -47.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046496242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.034 kcal (2) G-P(sol) polarization free energy of solvation -39.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds