Wall clock time and date at job start Wed Apr 1 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21620 * 119.99738 * 359.97438 * 4 3 2 6 6 C 1.47292 * 119.99868 * 180.02562 * 4 3 2 7 7 C 1.36582 * 127.53437 * 0.02562 * 6 4 3 8 8 O 1.34099 * 108.89715 * 179.88299 * 7 6 4 9 9 C 1.33383 * 111.28972 * 359.73101 * 8 7 6 10 10 C 1.36173 * 108.07444 * 0.28189 * 9 8 7 11 11 C 1.47706 * 122.28608 * 178.61770 * 10 9 8 12 12 O 1.21621 * 122.50008 * 224.08112 * 11 10 9 13 13 N 1.35716 * 115.15156 * 44.27213 * 11 10 9 14 14 C 1.45352 * 119.12343 * 14.05685 * 13 11 10 15 15 C 1.52867 * 113.82125 * 273.80536 * 14 13 11 16 16 C 1.50539 * 128.62302 * 181.01275 * 9 8 7 17 17 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 18 18 C 1.54321 * 102.96961 * 206.45980 * 17 2 1 19 19 N 1.47026 * 107.26791 * 22.19024 * 18 17 2 20 20 C 1.36940 * 125.64258 * 181.03445 * 19 18 17 21 21 H 1.08003 * 119.99660 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00559 * 0.02875 * 20 19 18 23 23 N 1.31617 * 119.99776 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00230 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46764 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46723 * 120.00066 * 24 22 20 27 27 H 1.48499 * 109.47140 * 239.99844 * 24 22 20 28 28 C 1.47419 * 108.70576 * 1.06162 * 19 18 17 29 29 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 30 30 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 31 31 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 32 32 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 33 33 H 1.08001 * 125.55180 * 359.86709 * 7 6 4 34 34 H 0.96994 * 120.44215 * 194.08087 * 13 11 10 35 35 H 1.09003 * 108.61055 * 152.68235 * 14 13 11 36 36 H 1.08995 * 108.60888 * 34.92874 * 14 13 11 37 37 H 1.09000 * 109.46453 * 284.33098 * 15 14 13 38 38 H 1.08996 * 109.46507 * 164.35279 * 15 14 13 39 39 H 1.08994 * 109.44653 * 229.06061 * 16 9 8 40 40 H 1.08999 * 109.44514 * 348.97876 * 16 9 8 41 41 H 1.08998 * 110.70855 * 88.08785 * 17 2 1 42 42 H 1.08998 * 110.85957 * 324.90400 * 17 2 1 43 43 H 1.08998 * 109.88101 * 262.77542 * 18 17 2 44 44 H 1.09000 * 109.88483 * 141.60664 * 18 17 2 45 45 H 0.97004 * 120.00521 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.36926 * 94.70918 * 28 19 18 47 47 H 1.08995 * 110.36556 * 216.92202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1167 1.7966 1.9685 6 6 2.3145 3.5667 1.0346 7 6 3.0786 4.1655 0.0739 8 8 3.3447 5.4241 0.4525 9 6 2.7856 5.7039 1.6307 10 6 2.1265 4.5923 2.0602 11 6 1.4163 4.5469 3.3545 12 8 1.4997 3.5997 4.1127 13 7 0.6596 5.6378 3.6357 14 6 0.3548 6.5806 2.5723 15 6 1.4278 7.6503 2.3692 16 6 2.8170 6.9959 2.4026 17 6 2.0901 -0.8107 -1.2023 18 6 3.4707 -1.2757 -0.6934 19 7 3.4280 -1.2429 0.7759 20 6 4.4639 -1.5649 1.6117 21 1 4.3314 -1.5089 2.6821 22 6 5.6841 -1.9633 1.0833 23 7 5.8454 -2.0320 -0.2211 24 14 7.0973 -2.4018 2.2235 25 1 6.6619 -2.2444 3.6345 26 1 7.5061 -3.8096 1.9861 27 1 8.2469 -1.5007 1.9562 28 6 2.0853 -0.8066 1.2002 29 1 -0.3633 0.4753 0.9111 30 1 -0.3634 0.5514 -0.8672 31 1 -0.3633 -1.0268 -0.0440 32 1 2.5890 1.6829 -0.7448 33 1 3.4141 3.7010 -0.8416 34 1 0.3268 5.7866 4.5346 35 1 -0.5889 7.0742 2.8049 36 1 0.2343 6.0274 1.6410 37 1 1.3564 8.3920 3.1648 38 1 1.2782 8.1364 1.4052 39 1 3.0985 6.7944 3.4362 40 1 3.5464 7.6696 1.9530 41 1 2.1972 -0.1737 -2.0803 42 1 1.4525 -1.6665 -1.4240 43 1 4.2461 -0.6014 -1.0569 44 1 3.6693 -2.2913 -1.0359 45 1 6.6982 -2.3100 -0.5905 46 1 1.4520 -1.6704 1.4024 47 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046496242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:58 Heat of formation + Delta-G solvation = -50.253932 kcal Electronic energy + Delta-G solvation = -31900.489972 eV Core-core repulsion = 27663.630923 eV Total energy + Delta-G solvation = -4236.859049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.94592 -41.10120 -40.51896 -38.77216 -37.61301 -35.69570 -34.30052 -33.80452 -33.37470 -31.80775 -30.72982 -30.27324 -27.54889 -27.19105 -25.80645 -25.24713 -24.48123 -22.56917 -22.15847 -21.23574 -20.75202 -20.25914 -19.02014 -18.37591 -18.30294 -17.64437 -17.42233 -17.07729 -16.67932 -16.47773 -16.25476 -15.98106 -15.58231 -15.44331 -15.29440 -15.12918 -14.72890 -14.33262 -14.21828 -14.06726 -13.89992 -13.69998 -13.55376 -13.43105 -13.11950 -12.87579 -12.77197 -12.68693 -12.45398 -12.14662 -12.04845 -12.00207 -11.80050 -11.73100 -11.57220 -11.25037 -10.92708 -10.78394 -10.73085 -10.11158 -10.02209 -9.67225 -8.87879 -7.88758 -5.21726 0.26750 0.31590 1.40012 1.40371 1.51726 1.54254 1.70594 2.11865 2.30030 2.45315 2.46454 3.28580 3.38277 3.43830 3.56564 3.67814 3.73099 3.88137 3.95551 4.03642 4.17999 4.18844 4.21755 4.39369 4.47809 4.64388 4.65962 4.67897 4.79836 4.80922 4.84815 4.87409 4.92345 4.99359 5.01891 5.07930 5.11266 5.20349 5.33685 5.39696 5.63550 5.68886 5.75497 5.76621 5.99043 6.09693 6.18496 6.63149 7.10615 7.19560 7.32426 7.74938 8.39243 9.20948 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003399 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.645011 B = 8235.486728 C = 8938.345225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.169 3.831 3 N -0.691 5.691 4 C 0.576 3.424 5 O -0.559 6.559 6 C -0.219 4.219 7 C 0.044 3.956 8 O -0.149 6.149 9 C 0.056 3.944 10 C -0.233 4.233 11 C 0.584 3.416 12 O -0.561 6.561 13 N -0.716 5.716 14 C 0.098 3.902 15 C -0.122 4.122 16 C -0.046 4.046 17 C -0.124 4.124 18 C 0.185 3.815 19 N -0.620 5.620 20 C -0.244 4.244 21 H 0.059 0.941 22 C -0.054 4.054 23 N -0.941 5.941 24 Si 0.971 3.029 25 H -0.280 1.280 26 H -0.284 1.284 27 H -0.285 1.285 28 C 0.127 3.873 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.408 0.592 33 H 0.256 0.744 34 H 0.411 0.589 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.022 0.978 44 H 0.010 0.990 45 H 0.249 0.751 46 H 0.021 0.979 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.191 25.924 -4.726 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.082 3.918 3 N -0.342 5.342 4 C 0.363 3.637 5 O -0.438 6.438 6 C -0.224 4.224 7 C -0.025 4.025 8 O -0.042 6.042 9 C 0.003 3.997 10 C -0.238 4.238 11 C 0.371 3.629 12 O -0.439 6.439 13 N -0.370 5.370 14 C -0.026 4.026 15 C -0.160 4.160 16 C -0.083 4.083 17 C -0.163 4.163 18 C 0.060 3.940 19 N -0.346 5.346 20 C -0.373 4.373 21 H 0.077 0.923 22 C -0.247 4.247 23 N -0.590 5.590 24 Si 0.799 3.201 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.212 1.212 28 C 0.001 3.999 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.245 0.755 33 H 0.272 0.728 34 H 0.249 0.751 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.138 0.862 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.040 0.960 44 H 0.028 0.972 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -11.213 25.242 -4.028 27.912 hybrid contribution 1.148 -1.152 1.075 1.949 sum -10.065 24.090 -2.953 26.275 Atomic orbital electron populations 1.21893 0.91994 1.03140 1.02575 1.21390 0.94030 0.80605 0.95774 1.45518 1.54449 1.12042 1.22238 1.17516 0.79819 0.84309 0.82010 1.90803 1.40538 1.76838 1.35601 1.20979 1.08155 0.94973 0.98320 1.25179 0.96201 0.81136 1.00022 1.83603 1.58890 1.29463 1.32261 1.23273 0.94351 0.97336 0.84695 1.21057 1.09591 0.94983 0.98215 1.18031 0.78201 0.81809 0.84850 1.90870 1.64319 1.35088 1.53632 1.45660 1.53353 1.23438 1.14538 1.21477 1.00262 0.90803 0.90099 1.22269 0.90104 0.97612 1.06060 1.20619 1.01791 0.88085 0.97801 1.23154 0.96671 1.00000 0.96433 1.20982 0.93116 0.97620 0.82260 1.44675 1.08268 1.78800 1.02887 1.19294 0.91001 1.38017 0.89021 0.92348 1.25447 0.99585 1.02104 0.97600 1.70127 1.24202 1.54457 1.10197 0.85130 0.79407 0.77494 0.78027 1.20574 1.21088 1.21181 1.21967 0.86526 0.94885 0.96570 0.93490 0.89919 0.90494 0.75539 0.72817 0.75135 0.86625 0.92578 0.87059 0.87416 0.89004 0.86192 0.87669 0.88867 0.95990 0.97157 0.94143 0.96104 0.96153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 8.60 71.98 0.62 -3.64 16 2 C 0.17 6.19 0.83 5.10 0.00 6.19 16 3 N -0.69 -23.42 5.17 -419.53 -2.17 -25.58 16 4 C 0.58 22.44 7.20 86.62 0.62 23.07 16 5 O -0.56 -27.01 12.56 4.86 0.06 -26.95 16 6 C -0.22 -6.96 6.32 -19.20 -0.12 -7.08 16 7 C 0.04 0.94 11.61 67.43 0.78 1.72 16 8 O -0.15 -2.91 10.48 7.99 0.08 -2.83 16 9 C 0.06 1.14 6.38 25.15 0.16 1.30 16 10 C -0.23 -7.00 4.96 -19.17 -0.10 -7.10 16 11 C 0.58 19.44 7.30 86.60 0.63 20.08 16 12 O -0.56 -25.89 17.11 4.85 0.08 -25.81 16 13 N -0.72 -14.32 5.26 -467.43 -2.46 -16.78 16 14 C 0.10 1.08 5.99 86.55 0.52 1.60 16 15 C -0.12 -0.62 6.32 30.75 0.19 -0.42 16 16 C -0.05 -0.50 5.65 30.00 0.17 -0.33 16 17 C -0.12 -4.22 6.00 31.88 0.19 -4.02 16 18 C 0.18 8.97 5.36 86.73 0.47 9.43 16 19 N -0.62 -34.36 3.39 -692.01 -2.35 -36.71 16 20 C -0.24 -15.06 10.28 84.03 0.86 -14.19 16 21 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 22 C -0.05 -3.21 5.49 84.86 0.47 -2.74 16 23 N -0.94 -56.78 10.31 21.65 0.22 -56.56 16 24 Si 0.97 48.62 29.55 68.60 2.03 50.65 16 25 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 C 0.13 6.22 6.10 86.85 0.53 6.74 16 29 H 0.05 1.71 6.53 -2.39 -0.02 1.69 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 32 H 0.41 10.93 7.49 -92.71 -0.69 10.23 16 33 H 0.26 3.20 7.49 -2.91 -0.02 3.17 16 34 H 0.41 6.75 8.95 -92.71 -0.83 5.92 16 35 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.86 6.93 -2.39 -0.02 0.84 16 37 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.09 1.15 8.05 -2.39 -0.02 1.13 16 40 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 2.74 8.05 -2.39 -0.02 2.73 16 42 H 0.09 2.86 8.03 -2.39 -0.02 2.84 16 43 H 0.02 1.15 7.38 -2.39 -0.02 1.13 16 44 H 0.01 0.56 7.51 -2.39 -0.02 0.54 16 45 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 46 H 0.02 1.03 8.04 -2.39 -0.02 1.01 16 47 H 0.02 1.14 6.31 -2.39 -0.02 1.12 16 Total: -1.00 -95.31 375.27 1.01 -94.30 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -0.50 Total: 15.66 kcal Atomic # 6 Polarization: 24.61 SS G_CDS: 6.00 Total: 30.61 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -6.75 Total: -135.63 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: 0.23 Total: -55.59 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -95.31 1.01 -94.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046496242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.045 kcal (2) G-P(sol) polarization free energy of solvation -95.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds