Wall clock time and date at job start Wed Apr 1 2020 05:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35652 * 116.99628 * 2 1 4 4 C 1.39339 * 120.54004 * 359.97438 * 3 2 1 5 5 C 1.38305 * 118.43734 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.27980 * 179.97438 * 5 4 3 7 7 C 1.38770 * 119.44742 * 0.25943 * 5 4 3 8 8 N 1.31385 * 121.06072 * 359.46308 * 7 5 4 9 9 C 1.32855 * 121.69480 * 0.55048 * 8 7 5 10 10 C 1.47836 * 119.77705 * 179.70491 * 9 8 7 11 11 O 1.21559 * 119.99396 * 172.59082 * 10 9 8 12 12 N 1.34770 * 120.00528 * 352.58634 * 10 9 8 13 13 C 1.47129 * 121.05764 * 178.52283 * 12 10 9 14 14 C 1.53216 * 108.72667 * 127.77497 * 13 12 10 15 15 O 1.43104 * 109.34931 * 54.12773 * 14 13 12 16 16 C 1.42491 * 113.97787 * 300.04675 * 15 14 13 17 17 C 1.53467 * 113.76695 * 286.78850 * 16 15 14 18 18 N 1.47660 * 85.97076 * 268.71525 * 17 16 15 19 19 C 1.36945 * 134.45590 * 155.74336 * 18 17 16 20 20 H 1.07995 * 120.00440 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99698 * 359.95244 * 19 18 17 22 22 N 1.31619 * 120.00156 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99973 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46928 * 89.99896 * 23 21 19 25 25 H 1.48500 * 109.47464 * 209.99637 * 23 21 19 26 26 H 1.48495 * 109.47219 * 330.00322 * 23 21 19 27 27 C 1.47665 * 91.09166 * 335.71024 * 18 17 16 28 28 C 1.47347 * 121.05217 * 358.24669 * 12 10 9 29 29 H 1.09003 * 109.47367 * 299.99950 * 1 2 3 30 30 H 1.08999 * 109.47495 * 59.99726 * 1 2 3 31 31 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.07994 * 120.78245 * 359.95776 * 4 3 2 33 33 H 1.09001 * 109.47092 * 90.00439 * 6 5 4 34 34 H 1.08994 * 109.47641 * 210.00337 * 6 5 4 35 35 H 1.08999 * 109.46886 * 330.00330 * 6 5 4 36 36 H 1.07998 * 119.47364 * 179.74302 * 7 5 4 37 37 H 1.09004 * 109.59280 * 247.54594 * 13 12 10 38 38 H 1.08999 * 109.59362 * 8.00161 * 13 12 10 39 39 H 1.09005 * 109.49353 * 174.08943 * 14 13 12 40 40 H 1.08998 * 109.49299 * 294.14201 * 14 13 12 41 41 H 1.09002 * 113.79280 * 22.98388 * 17 16 15 42 42 H 1.09003 * 113.79012 * 154.45055 * 17 16 15 43 43 H 0.97000 * 119.99977 * 180.02562 * 22 21 19 44 44 H 1.09004 * 113.78940 * 270.02805 * 27 18 17 45 45 H 1.08999 * 113.90421 * 138.57189 * 27 18 17 46 46 H 1.08998 * 109.74325 * 348.02702 * 28 12 10 47 47 H 1.08988 * 109.74537 * 108.75188 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3844 -0.0005 5 6 1.9694 3.5928 0.0000 6 6 1.2018 4.8897 -0.0011 7 6 3.3571 3.6013 -0.0044 8 7 4.0418 2.4800 0.0015 9 6 3.4409 1.2951 0.0010 10 6 4.2532 0.0599 0.0011 11 8 3.7147 -1.0215 0.1364 12 7 5.5905 0.1327 -0.1488 13 6 6.4246 -1.0789 -0.1200 14 6 7.3084 -1.0977 -1.3714 15 8 8.0404 0.1293 -1.4533 16 6 7.2178 1.2900 -1.5335 17 6 6.5318 1.4692 -2.8945 18 7 7.7158 2.2682 -3.2691 19 6 8.3170 2.5934 -4.4557 20 1 9.2016 3.2130 -4.4609 21 6 7.7898 2.1264 -5.6518 22 7 6.7123 1.3705 -5.6455 23 14 8.6103 2.5695 -7.2704 24 1 9.6295 1.5428 -7.6060 25 1 7.5876 2.6217 -8.3459 26 1 9.2662 3.8959 -7.1461 27 6 7.9912 2.5766 -1.8515 28 6 6.2630 1.4278 -0.3529 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2173 2.3527 -0.0016 33 1 1.0156 5.2026 1.0263 34 1 1.7831 5.6556 -0.5144 35 1 0.2515 4.7489 -0.5160 36 1 3.8827 4.5447 -0.0081 37 1 7.0526 -1.0693 0.7709 38 1 5.7860 -1.9622 -0.1102 39 1 8.0054 -1.9337 -1.3120 40 1 6.6826 -1.2080 -2.2570 41 1 6.4290 0.5433 -3.4605 42 1 5.6083 2.0464 -2.8489 43 1 6.3441 1.0438 -6.4813 44 1 7.5018 3.4832 -1.4957 45 1 9.0476 2.5313 -1.5869 46 1 5.5220 2.1977 -0.5678 47 1 6.8248 1.6959 0.5417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053288211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:02 Heat of formation + Delta-G solvation = 17.800927 kcal Electronic energy + Delta-G solvation = -32138.996583 eV Core-core repulsion = 27905.088614 eV Total energy + Delta-G solvation = -4233.907968 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24325 -39.85643 -38.44260 -38.34670 -35.90175 -34.56018 -33.73498 -32.13934 -31.17698 -29.95894 -28.48095 -27.91477 -27.06428 -25.80635 -24.95493 -23.78179 -23.32034 -22.39115 -21.62905 -19.89394 -18.70889 -17.78970 -17.69410 -17.11481 -16.69334 -16.20227 -16.05180 -15.48450 -15.10235 -15.06626 -14.82454 -14.33544 -14.28832 -14.13951 -13.99564 -13.88606 -13.52951 -13.25432 -13.11338 -12.95160 -12.82128 -12.59196 -12.34533 -12.19849 -11.82694 -11.67351 -11.52630 -11.25537 -11.01257 -10.81503 -10.76786 -10.49695 -10.18368 -9.96558 -9.84633 -9.75213 -9.49197 -9.08645 -8.84674 -8.73163 -8.57556 -7.98742 -6.78677 -5.67680 -2.99532 0.52320 1.03424 2.82028 2.92727 3.12997 3.44410 3.48607 3.50647 3.76218 4.06462 4.26995 4.32045 4.43553 4.52030 4.65858 4.72024 4.82025 4.89685 5.05860 5.19639 5.21228 5.24679 5.28513 5.30842 5.41016 5.46709 5.52761 5.61063 5.63071 5.68615 5.75367 5.86300 5.98682 6.05296 6.14160 6.28952 6.42654 6.55840 6.61474 6.64735 6.85781 7.05453 7.12777 7.30505 7.51925 7.60112 7.69513 7.99430 8.07607 8.39044 9.12216 9.79055 10.67329 11.49355 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.003744 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.759781 B = 7476.018826 C = 8487.716527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.272 6.272 3 C 0.142 3.858 4 C -0.177 4.177 5 C -0.073 4.073 6 C -0.115 4.115 7 C 0.057 3.943 8 N -0.403 5.403 9 C 0.045 3.955 10 C 0.575 3.425 11 O -0.527 6.527 12 N -0.589 5.589 13 C 0.078 3.922 14 C 0.050 3.950 15 O -0.347 6.347 16 C 0.048 3.952 17 C 0.153 3.847 18 N -0.604 5.604 19 C -0.216 4.216 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.137 3.863 28 C 0.054 3.946 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.145 0.855 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.168 0.832 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.252 0.748 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.163 0.837 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.702 2.851 15.979 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.182 6.182 3 C 0.092 3.908 4 C -0.203 4.203 5 C -0.075 4.075 6 C -0.172 4.172 7 C -0.103 4.103 8 N -0.114 5.114 9 C -0.093 4.093 10 C 0.362 3.638 11 O -0.404 6.404 12 N -0.321 5.321 13 C -0.044 4.044 14 C -0.028 4.028 15 O -0.265 6.265 16 C 0.007 3.993 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.344 4.344 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.011 3.989 28 C -0.070 4.070 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.163 0.837 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.185 0.815 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.179 0.821 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.766 2.029 15.697 20.334 hybrid contribution -0.974 0.386 -1.046 1.480 sum -13.740 2.415 14.651 20.230 Atomic orbital electron populations 1.23209 0.78631 1.04625 1.01155 1.86421 1.20831 1.24516 1.86422 1.19925 0.92053 0.85660 0.93185 1.21604 1.00854 0.91231 1.06602 1.20962 0.95169 0.95759 0.95645 1.20824 0.99981 0.93447 1.02973 1.22847 0.90789 0.96892 0.99759 1.67562 1.36967 0.97705 1.09126 1.20632 0.88606 0.92747 1.07325 1.17556 0.81600 0.87208 0.77450 1.90788 1.71117 1.27967 1.50496 1.47941 1.05405 1.08884 1.69915 1.22308 0.94063 0.88740 0.99331 1.22841 0.95564 0.88038 0.96364 1.87891 1.31681 1.12896 1.93999 1.23626 0.92709 0.87880 0.95122 1.22629 0.89584 0.96336 0.88680 1.45771 1.28710 1.58696 0.99770 1.19002 1.06953 1.26314 0.82136 0.90185 1.24752 0.97851 1.00447 0.97437 1.69830 1.23038 1.38742 1.25421 0.86136 0.78226 0.77960 0.83543 1.21588 1.21784 1.20701 1.22464 0.98124 0.92007 0.86322 1.23742 0.98441 0.86797 0.97975 0.92599 0.92456 0.87677 0.83689 0.90295 0.90287 0.91031 0.81531 0.90964 0.88518 0.88316 0.92294 0.90879 0.95382 0.93811 0.93273 0.92847 0.82126 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.83 101.05 0.99 1.15 16 2 O -0.27 -3.83 8.59 -40.48 -0.35 -4.18 16 3 C 0.14 1.99 6.70 -38.56 -0.26 1.73 16 4 C -0.18 -1.82 8.80 -39.15 -0.34 -2.16 16 5 C -0.07 -0.70 5.90 -104.40 -0.62 -1.31 16 6 C -0.12 -0.68 10.03 36.01 0.36 -0.32 16 7 C 0.06 0.65 10.85 -17.55 -0.19 0.45 16 8 N -0.40 -5.86 5.99 -9.71 -0.06 -5.92 16 9 C 0.04 0.72 6.66 -82.88 -0.55 0.17 16 10 C 0.57 10.53 7.69 -12.34 -0.09 10.44 16 11 O -0.53 -10.58 14.64 -16.51 -0.24 -10.82 16 12 N -0.59 -10.40 3.03 -173.82 -0.53 -10.93 16 13 C 0.08 1.25 6.60 -3.59 -0.02 1.23 16 14 C 0.05 0.88 6.88 37.27 0.26 1.14 16 15 O -0.35 -7.34 10.52 -35.23 -0.37 -7.71 16 16 C 0.05 1.00 1.21 -90.52 -0.11 0.89 16 17 C 0.15 3.86 6.64 -3.17 -0.02 3.84 16 18 N -0.60 -16.21 3.70 -180.36 -0.67 -16.88 16 19 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 20 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -28.42 11.39 55.49 0.63 -27.79 16 23 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.14 2.95 8.33 -3.18 -0.03 2.93 16 28 C 0.05 0.93 5.27 -3.86 -0.02 0.91 16 29 H 0.06 0.35 7.70 -51.93 -0.40 -0.05 16 30 H 0.06 0.40 7.70 -51.93 -0.40 0.00 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.15 1.03 6.46 -52.49 -0.34 0.69 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 1.51 7.05 -51.93 -0.37 1.15 16 39 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.06 1.17 7.20 -51.93 -0.37 0.80 16 41 H 0.07 2.09 6.31 -51.93 -0.33 1.76 16 42 H 0.03 0.73 7.92 -51.93 -0.41 0.32 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.16 2.79 3.67 -90.98 -0.33 2.46 16 47 H 0.06 1.00 8.14 -51.94 -0.42 0.58 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -37.32 377.66 -8.53 -45.86 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.72 Total: 0.62 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: -0.90 Total: 14.28 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.62 Total: -61.52 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.96 Total: -22.71 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.32 -8.53 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053288211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.657 kcal (2) G-P(sol) polarization free energy of solvation -37.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds