Wall clock time and date at job start Wed Apr 1 2020 05:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35652 * 116.99628 * 2 1 4 4 C 1.39339 * 120.54004 * 359.97438 * 3 2 1 5 5 C 1.38305 * 118.43734 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.27980 * 179.97438 * 5 4 3 7 7 C 1.38770 * 119.44742 * 0.25943 * 5 4 3 8 8 N 1.31385 * 121.06072 * 359.46308 * 7 5 4 9 9 C 1.32855 * 121.69480 * 0.55048 * 8 7 5 10 10 C 1.47836 * 119.77705 * 179.70491 * 9 8 7 11 11 O 1.21559 * 119.99396 * 172.59082 * 10 9 8 12 12 N 1.34770 * 120.00528 * 352.58634 * 10 9 8 13 13 C 1.47129 * 121.05764 * 178.52283 * 12 10 9 14 14 C 1.53216 * 108.72667 * 127.77497 * 13 12 10 15 15 O 1.43104 * 109.34931 * 54.12773 * 14 13 12 16 16 C 1.42491 * 113.97787 * 300.04675 * 15 14 13 17 17 C 1.53467 * 113.76695 * 286.78850 * 16 15 14 18 18 N 1.47660 * 85.97076 * 268.71525 * 17 16 15 19 19 C 1.36945 * 134.45590 * 155.74336 * 18 17 16 20 20 H 1.07995 * 120.00440 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99698 * 359.95244 * 19 18 17 22 22 N 1.31619 * 120.00156 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99973 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46928 * 89.99896 * 23 21 19 25 25 H 1.48500 * 109.47464 * 209.99637 * 23 21 19 26 26 H 1.48495 * 109.47219 * 330.00322 * 23 21 19 27 27 C 1.47665 * 91.09166 * 335.71024 * 18 17 16 28 28 C 1.47347 * 121.05217 * 358.24669 * 12 10 9 29 29 H 1.09003 * 109.47367 * 299.99950 * 1 2 3 30 30 H 1.08999 * 109.47495 * 59.99726 * 1 2 3 31 31 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.07994 * 120.78245 * 359.95776 * 4 3 2 33 33 H 1.09001 * 109.47092 * 90.00439 * 6 5 4 34 34 H 1.08994 * 109.47641 * 210.00337 * 6 5 4 35 35 H 1.08999 * 109.46886 * 330.00330 * 6 5 4 36 36 H 1.07998 * 119.47364 * 179.74302 * 7 5 4 37 37 H 1.09004 * 109.59280 * 247.54594 * 13 12 10 38 38 H 1.08999 * 109.59362 * 8.00161 * 13 12 10 39 39 H 1.09005 * 109.49353 * 174.08943 * 14 13 12 40 40 H 1.08998 * 109.49299 * 294.14201 * 14 13 12 41 41 H 1.09002 * 113.79280 * 22.98388 * 17 16 15 42 42 H 1.09003 * 113.79012 * 154.45055 * 17 16 15 43 43 H 0.97000 * 119.99977 * 180.02562 * 22 21 19 44 44 H 1.09004 * 113.78940 * 270.02805 * 27 18 17 45 45 H 1.08999 * 113.90421 * 138.57189 * 27 18 17 46 46 H 1.08998 * 109.74325 * 348.02702 * 28 12 10 47 47 H 1.08988 * 109.74537 * 108.75188 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3844 -0.0005 5 6 1.9694 3.5928 0.0000 6 6 1.2018 4.8897 -0.0011 7 6 3.3571 3.6013 -0.0044 8 7 4.0418 2.4800 0.0015 9 6 3.4409 1.2951 0.0010 10 6 4.2532 0.0599 0.0011 11 8 3.7147 -1.0215 0.1364 12 7 5.5905 0.1327 -0.1488 13 6 6.4246 -1.0789 -0.1200 14 6 7.3084 -1.0977 -1.3714 15 8 8.0404 0.1293 -1.4533 16 6 7.2178 1.2900 -1.5335 17 6 6.5318 1.4692 -2.8945 18 7 7.7158 2.2682 -3.2691 19 6 8.3170 2.5934 -4.4557 20 1 9.2016 3.2130 -4.4609 21 6 7.7898 2.1264 -5.6518 22 7 6.7123 1.3705 -5.6455 23 14 8.6103 2.5695 -7.2704 24 1 9.6295 1.5428 -7.6060 25 1 7.5876 2.6217 -8.3459 26 1 9.2662 3.8959 -7.1461 27 6 7.9912 2.5766 -1.8515 28 6 6.2630 1.4278 -0.3529 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2173 2.3527 -0.0016 33 1 1.0156 5.2026 1.0263 34 1 1.7831 5.6556 -0.5144 35 1 0.2515 4.7489 -0.5160 36 1 3.8827 4.5447 -0.0081 37 1 7.0526 -1.0693 0.7709 38 1 5.7860 -1.9622 -0.1102 39 1 8.0054 -1.9337 -1.3120 40 1 6.6826 -1.2080 -2.2570 41 1 6.4290 0.5433 -3.4605 42 1 5.6083 2.0464 -2.8489 43 1 6.3441 1.0438 -6.4813 44 1 7.5018 3.4832 -1.4957 45 1 9.0476 2.5313 -1.5869 46 1 5.5220 2.1977 -0.5678 47 1 6.8248 1.6959 0.5417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053288211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:02 Heat of formation + Delta-G solvation = -8.157149 kcal Electronic energy + Delta-G solvation = -32140.122209 eV Core-core repulsion = 27905.088614 eV Total energy + Delta-G solvation = -4235.033595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.30178 -41.27772 -39.82296 -39.34274 -37.61347 -35.87271 -34.72513 -34.22715 -32.08291 -31.52034 -29.76988 -28.90545 -28.12123 -27.48548 -26.80050 -24.87838 -24.56258 -23.72640 -23.01214 -21.22561 -20.34616 -18.87278 -18.77452 -18.67176 -18.15935 -17.46626 -17.18117 -17.07174 -16.60805 -16.36827 -16.27373 -15.80764 -15.63580 -15.20119 -15.09640 -14.91663 -14.84600 -14.76015 -14.69972 -14.12055 -13.88493 -13.60255 -13.54131 -13.29827 -13.13314 -12.88144 -12.79142 -12.76822 -12.53268 -12.39684 -12.36196 -12.11657 -11.94493 -11.70522 -11.39972 -11.26029 -10.95326 -10.78472 -10.54577 -9.98033 -9.65463 -9.35364 -8.91143 -7.89161 -5.23268 -0.42918 0.16744 1.43435 1.46937 1.55156 1.64806 1.84134 2.16461 2.47056 2.66338 2.74899 3.02619 3.30644 3.38892 3.48907 3.60329 3.75239 3.84268 3.89399 3.95920 4.04014 4.14097 4.23478 4.24074 4.33978 4.34435 4.57055 4.60898 4.67368 4.71935 4.73874 4.77586 4.81401 4.83825 4.87456 4.96318 4.99900 5.15434 5.18716 5.22516 5.28874 5.42145 5.47064 5.67649 5.90331 6.17616 6.27617 6.37412 6.64515 6.89751 7.07768 7.60547 8.54941 9.27612 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.003744 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.759781 B = 7476.018826 C = 8487.716527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.308 6.308 3 C 0.133 3.867 4 C -0.173 4.173 5 C -0.057 4.057 6 C -0.113 4.113 7 C 0.049 3.951 8 N -0.423 5.423 9 C -0.003 4.003 10 C 0.567 3.433 11 O -0.559 6.559 12 N -0.597 5.597 13 C 0.082 3.918 14 C 0.051 3.949 15 O -0.366 6.366 16 C 0.067 3.933 17 C 0.157 3.843 18 N -0.633 5.633 19 C -0.229 4.229 20 H 0.089 0.911 21 C -0.071 4.071 22 N -0.959 5.959 23 Si 0.981 3.019 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.263 1.263 27 C 0.140 3.860 28 C 0.064 3.936 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.180 0.820 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.195 0.805 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.024 0.976 41 H 0.027 0.973 42 H 0.016 0.984 43 H 0.245 0.755 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.169 0.831 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.500 5.353 17.381 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.219 6.219 3 C 0.082 3.918 4 C -0.198 4.198 5 C -0.059 4.059 6 C -0.170 4.170 7 C -0.113 4.113 8 N -0.134 5.134 9 C -0.139 4.139 10 C 0.356 3.644 11 O -0.437 6.437 12 N -0.329 5.329 13 C -0.040 4.040 14 C -0.027 4.027 15 O -0.285 6.285 16 C 0.025 3.975 17 C 0.031 3.969 18 N -0.360 5.360 19 C -0.357 4.357 20 H 0.106 0.894 21 C -0.263 4.263 22 N -0.609 5.609 23 Si 0.809 3.191 24 H -0.215 1.215 25 H -0.222 1.222 26 H -0.187 1.187 27 C 0.015 3.985 28 C -0.059 4.059 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.197 0.803 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.212 0.788 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.033 0.967 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.185 0.815 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.546 4.534 17.140 22.312 hybrid contribution -0.829 -0.333 -1.440 1.695 sum -14.375 4.201 15.700 21.697 Atomic orbital electron populations 1.23533 0.76045 1.05948 1.02968 1.86365 1.23692 1.25338 1.86460 1.20118 0.91736 0.86829 0.93134 1.22003 1.02399 0.90083 1.05352 1.21430 0.94766 0.97201 0.92510 1.20955 1.00135 0.91319 1.04600 1.23449 0.92099 0.96786 0.98928 1.67254 1.38008 0.98041 1.10055 1.20377 0.89527 0.92376 1.11570 1.18047 0.81748 0.87997 0.76610 1.90738 1.71606 1.29327 1.52067 1.48067 1.05657 1.09222 1.69940 1.22326 0.93880 0.88589 0.99189 1.22983 0.96020 0.87738 0.95915 1.87843 1.32735 1.13881 1.94016 1.23375 0.92267 0.87762 0.94063 1.22433 0.89285 0.93997 0.91139 1.46144 1.29189 1.59374 1.01267 1.19470 1.07188 1.25661 0.83401 0.89364 1.25658 0.98725 1.00841 1.01070 1.70063 1.24823 1.40327 1.25666 0.85041 0.76980 0.78312 0.78791 1.21537 1.22161 1.18715 1.22703 0.99094 0.93439 0.83281 1.23706 0.97898 0.87181 0.97091 0.90189 0.91032 0.86833 0.80265 0.88175 0.89321 0.89585 0.78815 0.88390 0.88510 0.85238 0.95722 0.95436 0.96653 0.94591 0.90047 0.91983 0.81544 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.83 113.37 1.11 1.26 16 2 O -0.31 -8.79 8.59 -68.80 -0.59 -9.38 16 3 C 0.13 3.68 6.70 22.93 0.15 3.83 16 4 C -0.17 -3.15 8.80 22.55 0.20 -2.95 16 5 C -0.06 -0.91 5.90 -19.72 -0.12 -1.03 16 6 C -0.11 -0.84 10.03 71.24 0.71 -0.12 16 7 C 0.05 1.01 10.85 84.89 0.92 1.93 16 8 N -0.42 -12.09 5.99 -184.62 -1.11 -13.20 16 9 C 0.00 -0.11 6.66 41.93 0.28 0.17 16 10 C 0.57 21.64 7.69 86.78 0.67 22.30 16 11 O -0.56 -23.58 14.64 16.96 0.25 -23.33 16 12 N -0.60 -21.52 3.03 -822.11 -2.49 -24.01 16 13 C 0.08 2.67 6.60 86.33 0.57 3.24 16 14 C 0.05 1.85 6.88 72.05 0.50 2.34 16 15 O -0.37 -15.66 10.52 -148.98 -1.57 -17.23 16 16 C 0.07 2.81 1.21 -10.64 -0.01 2.79 16 17 C 0.16 8.27 6.64 86.31 0.57 8.84 16 18 N -0.63 -34.57 3.70 -729.40 -2.70 -37.27 16 19 C -0.23 -13.47 10.70 84.03 0.90 -12.57 16 20 H 0.09 4.89 7.83 -2.91 -0.02 4.86 16 21 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 22 N -0.96 -61.51 11.39 21.65 0.25 -61.26 16 23 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 27 C 0.14 5.90 8.33 86.30 0.72 6.62 16 28 C 0.06 2.22 5.27 86.04 0.45 2.67 16 29 H 0.08 0.82 7.70 -2.39 -0.02 0.80 16 30 H 0.07 0.87 7.70 -2.39 -0.02 0.85 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.18 1.87 6.46 -2.91 -0.02 1.85 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.09 0.56 8.09 -2.39 -0.02 0.54 16 35 H 0.09 0.46 8.09 -2.39 -0.02 0.44 16 36 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.10 3.14 7.05 -2.39 -0.02 3.12 16 39 H 0.13 3.82 8.14 -2.38 -0.02 3.80 16 40 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 41 H 0.03 1.68 6.31 -2.39 -0.02 1.66 16 42 H 0.02 0.85 7.92 -2.39 -0.02 0.83 16 43 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.08 2.95 8.09 -2.38 -0.02 2.93 16 45 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.17 5.75 3.67 -79.49 -0.29 5.46 16 47 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -86.30 377.66 2.88 -83.42 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.71 Total: 17.07 kcal Atomic # 6 Polarization: 27.47 SS G_CDS: 8.10 Total: 35.57 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -6.05 Total: -135.74 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -1.91 Total: -49.94 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -86.30 2.88 -83.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053288211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.268 kcal (2) G-P(sol) polarization free energy of solvation -86.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds