Wall clock time and date at job start Wed Apr 1 2020 04:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35428 * 117.00384 * 2 1 4 4 N 1.32241 * 119.79511 * 0.25528 * 3 2 1 5 5 C 1.31885 * 121.79855 * 180.26075 * 4 3 2 6 6 C 1.50698 * 119.40764 * 179.75043 * 5 4 3 7 7 C 1.38356 * 121.18310 * 359.48330 * 5 4 3 8 8 C 1.38332 * 119.46016 * 0.24559 * 7 5 4 9 9 C 1.39992 * 118.34830 * 0.02562 * 8 7 5 10 10 C 1.47527 * 120.59519 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99912 * 128.52488 * 10 9 8 12 12 N 1.34775 * 119.99645 * 308.52283 * 10 9 8 13 13 C 1.47136 * 121.05014 * 184.13587 * 12 10 9 14 14 C 1.53223 * 108.72425 * 127.77500 * 13 12 10 15 15 O 1.43116 * 109.34584 * 54.12575 * 14 13 12 16 16 C 1.42488 * 113.97844 * 300.04604 * 15 14 13 17 17 C 1.53472 * 113.76735 * 286.79253 * 16 15 14 18 18 N 1.47669 * 85.96649 * 268.71875 * 17 16 15 19 19 C 1.36934 * 134.45363 * 155.74902 * 18 17 16 20 20 H 1.08005 * 120.00386 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00034 * 359.94440 * 19 18 17 22 22 N 1.31616 * 120.00064 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47183 * 59.99960 * 23 21 19 25 25 H 1.48507 * 109.47023 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47081 * 299.99896 * 23 21 19 27 27 C 1.47669 * 91.09353 * 335.71087 * 18 17 16 28 28 C 1.47340 * 121.05798 * 3.85870 * 12 10 9 29 29 H 1.09007 * 109.47236 * 59.99526 * 1 2 3 30 30 H 1.08996 * 109.47691 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47098 * 299.99902 * 1 2 3 32 32 H 1.09002 * 109.47305 * 269.73201 * 6 5 4 33 33 H 1.08999 * 109.46659 * 149.72686 * 6 5 4 34 34 H 1.09001 * 109.47060 * 29.73576 * 6 5 4 35 35 H 1.07998 * 120.27016 * 180.22960 * 7 5 4 36 36 H 1.08003 * 120.82824 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.59231 * 247.54555 * 13 12 10 38 38 H 1.08999 * 109.59586 * 8.00553 * 13 12 10 39 39 H 1.09000 * 109.49472 * 174.08779 * 14 13 12 40 40 H 1.09001 * 109.49211 * 294.14167 * 14 13 12 41 41 H 1.08995 * 113.78997 * 22.98087 * 17 16 15 42 42 H 1.08994 * 113.78970 * 154.45427 * 17 16 15 43 43 H 0.97004 * 119.99861 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.79204 * 270.03853 * 27 18 17 45 45 H 1.08994 * 113.90161 * 138.57652 * 27 18 17 46 46 H 1.09000 * 109.74266 * 348.03107 * 28 12 10 47 47 H 1.08998 * 109.74540 * 108.75260 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3197 2.3132 0.0051 5 6 1.8771 3.5084 0.0002 6 6 1.0000 4.7339 0.0007 7 6 3.2526 3.6575 0.0001 8 6 4.0587 2.5333 0.0001 9 6 3.4449 1.2752 -0.0004 10 6 4.2569 0.0435 -0.0010 11 8 4.0441 -0.8254 0.8224 12 7 5.2346 -0.1185 -0.9144 13 6 5.9984 -1.3736 -0.9941 14 6 5.9634 -1.8797 -2.4399 15 8 6.4220 -0.8448 -3.3157 16 6 5.6403 0.3454 -3.2649 17 6 4.2694 0.2145 -3.9423 18 7 4.9438 0.6956 -5.1647 19 6 4.6988 0.5735 -6.5064 20 1 5.3645 1.0344 -7.2212 21 6 3.5950 -0.1431 -6.9480 22 7 2.7837 -0.7049 -6.0771 23 14 3.2611 -0.3103 -8.7783 24 1 4.4115 -0.9846 -9.4318 25 1 2.0319 -1.1174 -8.9856 26 1 3.0748 1.0378 -9.3726 27 6 5.9879 1.3618 -4.3606 28 6 5.5686 0.9533 -1.8687 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7885 5.0298 -1.0268 33 1 1.5123 5.5470 0.5150 34 1 0.0648 4.5111 0.5146 35 1 3.6933 4.6434 -0.0002 36 1 5.1349 2.6240 -0.0004 37 1 7.0308 -1.1928 -0.6950 38 1 5.5494 -2.1171 -0.3356 39 1 6.6111 -2.7511 -2.5360 40 1 4.9423 -2.1545 -2.7044 41 1 3.9103 -0.8122 -4.0133 42 1 3.5194 0.9033 -3.5538 43 1 2.0121 -1.2053 -6.3857 44 1 5.7489 2.3920 -4.0964 45 1 6.9946 1.2482 -4.7625 46 1 4.7973 1.7231 -1.8425 47 1 6.5336 1.3891 -1.6101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053461708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:19 Heat of formation + Delta-G solvation = 2.109653 kcal Electronic energy + Delta-G solvation = -32344.631859 eV Core-core repulsion = 28110.043466 eV Total energy + Delta-G solvation = -4234.588393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.14749 -40.02353 -38.51922 -38.08369 -36.05335 -34.60795 -33.21486 -32.22869 -31.87663 -30.04850 -28.71731 -27.88510 -26.80514 -25.98199 -25.11433 -23.74947 -23.00079 -22.72675 -21.71995 -19.76108 -18.83324 -18.18858 -17.37892 -17.11555 -16.77085 -16.34117 -15.99896 -15.56915 -15.10806 -15.02453 -14.77113 -14.38622 -14.23761 -14.19643 -14.09631 -13.96099 -13.35938 -13.27475 -13.23318 -12.75937 -12.61969 -12.56884 -12.36968 -12.30106 -11.94146 -11.76365 -11.37386 -11.16156 -11.07591 -10.86997 -10.81839 -10.63221 -10.27796 -10.20683 -9.95745 -9.86769 -9.61243 -9.46265 -9.25271 -8.83389 -8.51872 -8.21546 -6.89816 -5.75435 -3.08406 0.71368 1.15346 2.69454 2.99441 3.04770 3.40290 3.44062 3.45580 3.61387 3.98556 4.07401 4.43772 4.48479 4.52561 4.85680 4.96457 5.01432 5.10150 5.12254 5.18726 5.25021 5.27702 5.33025 5.35090 5.39017 5.40446 5.46688 5.57273 5.64482 5.68685 5.73323 5.76332 5.77489 5.87375 5.95518 6.13986 6.25295 6.25982 6.44624 6.47347 6.51401 6.95335 7.16851 7.18334 7.41388 7.49695 7.71019 7.81289 7.97363 8.23262 9.03693 9.70875 10.56357 11.41330 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.004189 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.906719 B = 6682.589945 C = 7717.476073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.287 6.287 3 C 0.376 3.624 4 N -0.541 5.541 5 C 0.188 3.812 6 C -0.108 4.108 7 C -0.217 4.217 8 C -0.009 4.009 9 C -0.206 4.206 10 C 0.579 3.421 11 O -0.529 6.529 12 N -0.603 5.603 13 C 0.082 3.918 14 C 0.047 3.953 15 O -0.341 6.341 16 C 0.049 3.951 17 C 0.153 3.847 18 N -0.601 5.601 19 C -0.221 4.221 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.136 3.864 28 C 0.087 3.913 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.027 0.973 43 H 0.254 0.746 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 8.143 15.438 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.192 6.192 3 C 0.196 3.804 4 N -0.266 5.266 5 C 0.051 3.949 6 C -0.165 4.165 7 C -0.237 4.237 8 C -0.034 4.034 9 C -0.212 4.212 10 C 0.367 3.633 11 O -0.406 6.406 12 N -0.337 5.337 13 C -0.041 4.041 14 C -0.030 4.030 15 O -0.259 6.259 16 C 0.007 3.993 17 C 0.028 3.972 18 N -0.327 5.327 19 C -0.349 4.349 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.010 3.990 28 C -0.036 4.036 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.166 7.139 15.469 17.037 hybrid contribution 0.104 0.138 -0.959 0.974 sum 0.270 7.277 14.510 16.234 Atomic orbital electron populations 1.22930 0.76919 1.03346 1.02381 1.86351 1.23068 1.23603 1.86141 1.19610 0.87744 0.84925 0.88101 1.67228 1.40214 0.98188 1.20988 1.21135 0.92168 0.91924 0.89695 1.20812 0.99258 0.92689 1.03726 1.21689 0.93824 0.99814 1.08405 1.21585 1.00758 0.90114 0.90970 1.19731 0.91670 0.95159 1.14631 1.17747 0.79004 0.85874 0.80702 1.90764 1.68378 1.43356 1.38114 1.48026 1.35559 1.16494 1.33603 1.22301 0.96144 0.86643 0.98970 1.22903 1.01428 0.90992 0.87721 1.87926 1.52459 1.22954 1.62563 1.23578 0.96610 0.87643 0.91436 1.22640 0.90278 1.00334 0.83991 1.45736 1.26757 1.59366 1.00854 1.18936 1.07694 1.28270 0.79962 0.90146 1.24769 0.97378 1.00349 0.97788 1.69808 1.16264 1.38626 1.32138 0.86201 0.77391 0.77584 0.84583 1.21018 1.21589 1.21189 1.22481 0.94959 0.93141 0.88441 1.22512 1.01456 0.90408 0.89266 0.91911 0.88382 0.92300 0.89614 0.90197 0.90291 0.83846 0.83556 0.90795 0.88295 0.87999 0.92080 0.90508 0.95502 0.93626 0.93456 0.92503 0.88672 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 101.05 1.05 1.56 16 2 O -0.29 -4.93 9.61 -23.96 -0.23 -5.17 16 3 C 0.38 6.20 7.49 -16.61 -0.12 6.07 16 4 N -0.54 -7.89 9.11 -9.21 -0.08 -7.97 16 5 C 0.19 2.21 6.78 -82.53 -0.56 1.65 16 6 C -0.11 -0.85 10.16 36.00 0.37 -0.49 16 7 C -0.22 -2.25 9.71 -39.50 -0.38 -2.63 16 8 C -0.01 -0.10 7.59 -38.89 -0.30 -0.40 16 9 C -0.21 -3.21 4.96 -104.69 -0.52 -3.73 16 10 C 0.58 9.98 6.95 -12.47 -0.09 9.89 16 11 O -0.53 -10.49 16.14 -0.69 -0.01 -10.50 16 12 N -0.60 -9.55 3.03 -173.93 -0.53 -10.08 16 13 C 0.08 1.19 6.59 -3.58 -0.02 1.17 16 14 C 0.05 0.77 6.88 37.27 0.26 1.03 16 15 O -0.34 -6.68 10.52 -35.23 -0.37 -7.05 16 16 C 0.05 0.94 1.21 -90.52 -0.11 0.83 16 17 C 0.15 3.69 6.64 -3.17 -0.02 3.67 16 18 N -0.60 -15.55 3.70 -180.34 -0.67 -16.22 16 19 C -0.22 -6.26 10.70 -15.06 -0.16 -6.43 16 20 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -27.79 11.39 55.49 0.63 -27.16 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 C 0.14 2.74 8.33 -3.18 -0.03 2.71 16 28 C 0.09 1.31 4.63 -3.86 -0.02 1.29 16 29 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 30 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.15 1.35 7.25 -52.48 -0.38 0.97 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.45 7.09 -51.93 -0.37 1.08 16 39 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.06 1.15 7.20 -51.93 -0.37 0.77 16 41 H 0.08 2.12 6.31 -51.93 -0.33 1.79 16 42 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.10 1.40 4.75 -51.93 -0.25 1.15 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -36.50 382.96 -7.98 -44.48 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.72 Total: 0.60 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: -0.75 Total: 15.92 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.65 Total: -61.42 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.61 Total: -22.71 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.50 -7.98 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053461708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.592 kcal (2) G-P(sol) polarization free energy of solvation -36.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds