Wall clock time and date at job start Wed Apr 1 2020 04:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35428 * 117.00384 * 2 1 4 4 N 1.32241 * 119.79511 * 0.25528 * 3 2 1 5 5 C 1.31885 * 121.79855 * 180.26075 * 4 3 2 6 6 C 1.50698 * 119.40764 * 179.75043 * 5 4 3 7 7 C 1.38356 * 121.18310 * 359.48330 * 5 4 3 8 8 C 1.38332 * 119.46016 * 0.24559 * 7 5 4 9 9 C 1.39992 * 118.34830 * 0.02562 * 8 7 5 10 10 C 1.47527 * 120.59519 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99912 * 128.52488 * 10 9 8 12 12 N 1.34775 * 119.99645 * 308.52283 * 10 9 8 13 13 C 1.47136 * 121.05014 * 184.13587 * 12 10 9 14 14 C 1.53223 * 108.72425 * 127.77500 * 13 12 10 15 15 O 1.43116 * 109.34584 * 54.12575 * 14 13 12 16 16 C 1.42488 * 113.97844 * 300.04604 * 15 14 13 17 17 C 1.53472 * 113.76735 * 286.79253 * 16 15 14 18 18 N 1.47669 * 85.96649 * 268.71875 * 17 16 15 19 19 C 1.36934 * 134.45363 * 155.74902 * 18 17 16 20 20 H 1.08005 * 120.00386 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00034 * 359.94440 * 19 18 17 22 22 N 1.31616 * 120.00064 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47183 * 59.99960 * 23 21 19 25 25 H 1.48507 * 109.47023 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47081 * 299.99896 * 23 21 19 27 27 C 1.47669 * 91.09353 * 335.71087 * 18 17 16 28 28 C 1.47340 * 121.05798 * 3.85870 * 12 10 9 29 29 H 1.09007 * 109.47236 * 59.99526 * 1 2 3 30 30 H 1.08996 * 109.47691 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47098 * 299.99902 * 1 2 3 32 32 H 1.09002 * 109.47305 * 269.73201 * 6 5 4 33 33 H 1.08999 * 109.46659 * 149.72686 * 6 5 4 34 34 H 1.09001 * 109.47060 * 29.73576 * 6 5 4 35 35 H 1.07998 * 120.27016 * 180.22960 * 7 5 4 36 36 H 1.08003 * 120.82824 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.59231 * 247.54555 * 13 12 10 38 38 H 1.08999 * 109.59586 * 8.00553 * 13 12 10 39 39 H 1.09000 * 109.49472 * 174.08779 * 14 13 12 40 40 H 1.09001 * 109.49211 * 294.14167 * 14 13 12 41 41 H 1.08995 * 113.78997 * 22.98087 * 17 16 15 42 42 H 1.08994 * 113.78970 * 154.45427 * 17 16 15 43 43 H 0.97004 * 119.99861 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.79204 * 270.03853 * 27 18 17 45 45 H 1.08994 * 113.90161 * 138.57652 * 27 18 17 46 46 H 1.09000 * 109.74266 * 348.03107 * 28 12 10 47 47 H 1.08998 * 109.74540 * 108.75260 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3197 2.3132 0.0051 5 6 1.8771 3.5084 0.0002 6 6 1.0000 4.7339 0.0007 7 6 3.2526 3.6575 0.0001 8 6 4.0587 2.5333 0.0001 9 6 3.4449 1.2752 -0.0004 10 6 4.2569 0.0435 -0.0010 11 8 4.0441 -0.8254 0.8224 12 7 5.2346 -0.1185 -0.9144 13 6 5.9984 -1.3736 -0.9941 14 6 5.9634 -1.8797 -2.4399 15 8 6.4220 -0.8448 -3.3157 16 6 5.6403 0.3454 -3.2649 17 6 4.2694 0.2145 -3.9423 18 7 4.9438 0.6956 -5.1647 19 6 4.6988 0.5735 -6.5064 20 1 5.3645 1.0344 -7.2212 21 6 3.5950 -0.1431 -6.9480 22 7 2.7837 -0.7049 -6.0771 23 14 3.2611 -0.3103 -8.7783 24 1 4.4115 -0.9846 -9.4318 25 1 2.0319 -1.1174 -8.9856 26 1 3.0748 1.0378 -9.3726 27 6 5.9879 1.3618 -4.3606 28 6 5.5686 0.9533 -1.8687 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7885 5.0298 -1.0268 33 1 1.5123 5.5470 0.5150 34 1 0.0648 4.5111 0.5146 35 1 3.6933 4.6434 -0.0002 36 1 5.1349 2.6240 -0.0004 37 1 7.0308 -1.1928 -0.6950 38 1 5.5494 -2.1171 -0.3356 39 1 6.6111 -2.7511 -2.5360 40 1 4.9423 -2.1545 -2.7044 41 1 3.9103 -0.8122 -4.0133 42 1 3.5194 0.9033 -3.5538 43 1 2.0121 -1.2053 -6.3857 44 1 5.7489 2.3920 -4.0964 45 1 6.9946 1.2482 -4.7625 46 1 4.7973 1.7231 -1.8425 47 1 6.5336 1.3891 -1.6101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053461708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:18 Heat of formation + Delta-G solvation = -25.840840 kcal Electronic energy + Delta-G solvation = -32345.843883 eV Core-core repulsion = 28110.043466 eV Total energy + Delta-G solvation = -4235.800417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27789 -41.36125 -39.94095 -39.14509 -37.66457 -35.94764 -34.38203 -34.09699 -32.79772 -31.52409 -29.86955 -29.23065 -28.01452 -27.51058 -26.84603 -24.98242 -24.19692 -23.94100 -23.17068 -21.10657 -20.31399 -19.26872 -18.86075 -18.55151 -18.19843 -17.54615 -17.25930 -17.05857 -16.74059 -16.34915 -16.06291 -15.71992 -15.60938 -15.37860 -15.21305 -15.04430 -14.94737 -14.80370 -14.37830 -14.11724 -13.94237 -13.55451 -13.46408 -13.30060 -13.09216 -13.00292 -12.89844 -12.77863 -12.74710 -12.59427 -12.14481 -12.08119 -11.99795 -11.72981 -11.50885 -11.24830 -10.97240 -10.87064 -10.83761 -10.61875 -9.65101 -9.45381 -8.94789 -7.91486 -5.25674 -0.27253 0.20576 1.42191 1.43898 1.46749 1.52437 1.83706 2.01373 2.45107 2.59515 2.64196 3.04188 3.26345 3.34175 3.39033 3.67252 3.68133 3.76138 3.87565 3.90863 4.11900 4.22702 4.24864 4.30164 4.31380 4.33604 4.46593 4.53485 4.59941 4.61294 4.70021 4.70245 4.76096 4.81536 4.82948 4.92248 4.94753 4.96958 5.11616 5.15061 5.23505 5.29815 5.45257 5.47720 5.88199 6.08895 6.19386 6.30071 6.73202 6.87096 6.96500 7.58885 8.51264 9.24734 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.004189 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.906719 B = 6682.589945 C = 7717.476073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.322 6.322 3 C 0.344 3.656 4 N -0.559 5.559 5 C 0.174 3.826 6 C -0.105 4.105 7 C -0.202 4.202 8 C -0.005 4.005 9 C -0.235 4.235 10 C 0.577 3.423 11 O -0.567 6.567 12 N -0.605 5.605 13 C 0.087 3.913 14 C 0.048 3.952 15 O -0.358 6.358 16 C 0.070 3.930 17 C 0.153 3.847 18 N -0.634 5.634 19 C -0.229 4.229 20 H 0.089 0.911 21 C -0.070 4.070 22 N -0.958 5.958 23 Si 0.979 3.021 24 H -0.275 1.275 25 H -0.298 1.298 26 H -0.273 1.273 27 C 0.140 3.860 28 C 0.097 3.903 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.190 0.810 36 H 0.179 0.821 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.022 0.978 41 H 0.028 0.972 42 H 0.011 0.989 43 H 0.245 0.755 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 11.263 15.921 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.228 6.228 3 C 0.165 3.835 4 N -0.284 5.284 5 C 0.037 3.963 6 C -0.161 4.161 7 C -0.221 4.221 8 C -0.030 4.030 9 C -0.241 4.241 10 C 0.366 3.634 11 O -0.447 6.447 12 N -0.337 5.337 13 C -0.035 4.035 14 C -0.029 4.029 15 O -0.277 6.277 16 C 0.028 3.972 17 C 0.027 3.973 18 N -0.361 5.361 19 C -0.357 4.357 20 H 0.107 0.893 21 C -0.263 4.263 22 N -0.607 5.607 23 Si 0.807 3.193 24 H -0.201 1.201 25 H -0.225 1.225 26 H -0.198 1.198 27 C 0.015 3.985 28 C -0.026 4.026 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.207 0.793 36 H 0.196 0.804 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.149 0.851 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.028 0.972 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.119 0.881 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.608 10.301 15.952 19.167 hybrid contribution -0.643 -0.767 -1.106 1.492 sum 1.965 9.533 14.846 17.752 Atomic orbital electron populations 1.23047 0.75652 1.04408 1.02438 1.86290 1.24679 1.25098 1.86736 1.19923 0.88494 0.85177 0.89859 1.67261 1.40699 0.98799 1.21650 1.21973 0.93919 0.91952 0.88477 1.20941 0.98944 0.91840 1.04422 1.22212 0.92995 1.01329 1.05580 1.22013 1.02481 0.88854 0.89685 1.19860 0.91286 0.96002 1.16989 1.18073 0.78810 0.86146 0.80354 1.90726 1.69260 1.44851 1.39818 1.48122 1.35345 1.17055 1.33196 1.22337 0.97751 0.86290 0.97141 1.23030 0.99903 0.91403 0.88566 1.87888 1.52249 1.23666 1.63863 1.23261 0.92564 0.87645 0.93757 1.22464 0.92714 0.97018 0.85076 1.46136 1.28517 1.60728 1.00683 1.19404 1.07377 1.27174 0.81790 0.89283 1.25652 0.97696 1.00812 1.02124 1.70046 1.16717 1.40008 1.33972 0.85144 0.76833 0.77809 0.79526 1.20138 1.22466 1.19836 1.22752 0.93911 0.94555 0.87289 1.22537 1.04078 0.89824 0.86167 0.92760 0.86889 0.91197 0.89103 0.86824 0.90619 0.79294 0.80360 0.87351 0.88796 0.85052 0.95955 0.95362 0.97168 0.94632 0.89821 0.91408 0.88063 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.09 10.38 113.37 1.18 2.27 16 2 O -0.32 -11.92 9.61 -81.52 -0.78 -12.70 16 3 C 0.34 11.76 7.49 85.13 0.64 12.40 16 4 N -0.56 -16.39 9.11 -296.06 -2.70 -19.09 16 5 C 0.17 3.72 6.78 42.58 0.29 4.01 16 6 C -0.10 -1.36 10.16 71.24 0.72 -0.64 16 7 C -0.20 -3.40 9.71 22.32 0.22 -3.18 16 8 C -0.01 -0.11 7.59 22.72 0.17 0.07 16 9 C -0.24 -7.28 4.96 -19.91 -0.10 -7.38 16 10 C 0.58 19.97 6.95 86.69 0.60 20.58 16 11 O -0.57 -23.20 16.14 1.74 0.03 -23.18 16 12 N -0.60 -18.42 3.03 -822.44 -2.49 -20.91 16 13 C 0.09 2.42 6.59 86.33 0.57 2.99 16 14 C 0.05 1.57 6.88 72.06 0.50 2.07 16 15 O -0.36 -13.67 10.52 -148.98 -1.57 -15.24 16 16 C 0.07 2.58 1.21 -10.63 -0.01 2.56 16 17 C 0.15 7.63 6.64 86.31 0.57 8.20 16 18 N -0.63 -32.93 3.70 -729.37 -2.70 -35.62 16 19 C -0.23 -13.06 10.70 84.03 0.90 -12.16 16 20 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.96 -60.55 11.39 21.65 0.25 -60.30 16 23 Si 0.98 46.86 29.55 68.60 2.03 48.88 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 C 0.14 5.28 8.33 86.30 0.72 5.99 16 28 C 0.10 2.63 4.63 86.04 0.40 3.03 16 29 H 0.05 1.55 8.11 -2.38 -0.02 1.53 16 30 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.11 0.72 8.07 -2.39 -0.02 0.70 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.18 2.41 7.25 -2.91 -0.02 2.39 16 37 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.09 2.75 7.09 -2.39 -0.02 2.73 16 39 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 40 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 41 H 0.03 1.66 6.31 -2.39 -0.02 1.65 16 42 H 0.01 0.55 7.92 -2.39 -0.02 0.53 16 43 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.08 2.62 8.09 -2.38 -0.02 2.60 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.10 2.68 4.75 -2.39 -0.01 2.67 16 47 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -86.19 382.96 0.88 -85.31 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.99 Total: 15.71 kcal Atomic # 6 Polarization: 29.32 SS G_CDS: 7.83 Total: 37.15 kcal Atomic # 7 Polarization: -128.28 SS G_CDS: -7.65 Total: -135.93 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -2.32 Total: -51.12 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -86.19 0.88 -85.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053461708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.474 kcal (2) G-P(sol) polarization free energy of solvation -86.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds