Wall clock time and date at job start Wed Apr 1 2020 04:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38353 * 119.40987 * 2 1 4 4 C 1.38337 * 119.45721 * 180.02562 * 3 2 1 5 5 C 1.39983 * 118.35288 * 359.97438 * 4 3 2 6 6 C 1.47515 * 120.59878 * 180.02562 * 5 4 3 7 7 O 1.21592 * 120.00347 * 179.97438 * 6 5 4 8 8 N 1.34781 * 120.00209 * 0.02562 * 6 5 4 9 9 C 1.46504 * 120.00053 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.46745 * 180.02562 * 9 8 6 11 11 H 1.09006 * 110.52853 * 59.29794 * 10 9 8 12 12 C 1.55058 * 110.59003 * 182.10746 * 10 9 8 13 13 C 1.54991 * 102.12490 * 155.28405 * 12 10 9 14 14 C 1.53443 * 103.85046 * 339.14360 * 13 12 10 15 15 C 1.53212 * 115.01713 * 227.72679 * 14 13 12 16 16 N 1.47716 * 85.89997 * 220.50231 * 15 14 13 17 17 C 1.36939 * 134.43887 * 204.16804 * 16 15 14 18 18 H 1.07993 * 120.00492 * 173.43225 * 17 16 15 19 19 C 1.38813 * 119.99296 * 353.42619 * 17 16 15 20 20 N 1.31616 * 120.00577 * 5.08028 * 19 17 16 21 21 Si 1.86806 * 119.99752 * 185.07921 * 19 17 16 22 22 H 1.48497 * 109.46860 * 94.98738 * 21 19 17 23 23 H 1.48495 * 109.46994 * 214.99013 * 21 19 17 24 24 H 1.48504 * 109.46793 * 334.98788 * 21 19 17 25 25 C 1.47719 * 91.13243 * 24.11461 * 16 15 14 26 26 O 1.42972 * 108.16865 * 358.31868 * 14 13 12 27 27 C 1.40282 * 118.80455 * 0.28000 * 5 4 3 28 28 O 1.35421 * 119.80103 * 179.70431 * 27 5 4 29 29 N 1.31886 * 119.40550 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47817 * 89.99836 * 1 2 3 31 31 H 1.09001 * 109.47237 * 210.00214 * 1 2 3 32 32 H 1.09000 * 109.47088 * 329.99636 * 1 2 3 33 33 H 1.08000 * 120.27188 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.82070 * 179.97438 * 4 3 2 35 35 H 0.97005 * 119.99800 * 0.02562 * 8 6 5 36 36 H 1.08992 * 109.46956 * 60.00172 * 9 8 6 37 37 H 1.09000 * 109.46793 * 299.99840 * 9 8 6 38 38 H 1.09003 * 110.87020 * 273.43903 * 12 10 9 39 39 H 1.09001 * 110.87079 * 36.91613 * 12 10 9 40 40 H 1.09005 * 110.54951 * 97.72815 * 13 12 10 41 41 H 1.09000 * 110.55265 * 220.40198 * 13 12 10 42 42 H 1.09003 * 113.80580 * 334.74296 * 15 14 13 43 43 H 1.09000 * 113.80754 * 106.25583 * 15 14 13 44 44 H 0.96999 * 120.00640 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.80707 * 221.64144 * 25 16 15 46 46 H 1.09006 * 113.80433 * 90.13137 * 25 16 15 47 47 H 0.96706 * 114.00354 * 89.99991 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 -0.0005 5 6 4.2355 -0.0250 -0.0005 6 6 5.7096 -0.0816 -0.0005 7 8 6.2768 -1.1571 0.0000 8 7 6.4278 1.0589 0.0000 9 6 7.8918 1.0027 0.0006 10 6 8.4567 2.4245 0.0017 11 1 8.1131 2.9717 0.8797 12 6 10.0061 2.3958 -0.0510 13 6 10.3362 3.7749 -0.6766 14 6 9.0347 4.1794 -1.3816 15 6 9.2054 4.6797 -2.8197 16 7 8.1897 5.6951 -2.4744 17 6 7.2965 6.4416 -3.1957 18 1 6.5704 7.0568 -2.6851 19 6 7.3245 6.4076 -4.5831 20 7 8.1410 5.5837 -5.2049 21 14 6.2032 7.5314 -5.5677 22 1 6.9402 8.7667 -5.9361 23 1 5.7609 6.8323 -6.8009 24 1 5.0170 7.8883 -4.7486 25 6 8.5220 5.5822 -1.0396 26 8 8.0872 3.1227 -1.2091 27 6 3.4757 -1.2042 -0.0060 28 8 4.0990 -2.4064 -0.0121 29 7 2.1545 -1.1489 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6412 2.1375 -0.0004 34 1 4.1223 2.1343 -0.0010 35 1 5.9754 1.9170 0.0007 36 1 8.2354 0.4755 -0.8893 37 1 8.2347 0.4751 0.8906 38 1 10.4273 2.3130 0.9509 39 1 10.3580 1.5832 -0.6866 40 1 10.5907 4.4962 0.1000 41 1 11.1509 3.6841 -1.3949 42 1 10.1912 5.0962 -3.0266 43 1 8.8757 3.9669 -3.5755 44 1 8.1603 5.5596 -6.1744 45 1 7.6508 5.5846 -0.3846 46 1 9.3034 6.2688 -0.7136 47 1 4.2805 -2.7600 0.8695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053668547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:05 Heat of formation + Delta-G solvation = -21.195455 kcal Electronic energy + Delta-G solvation = -30396.662884 eV Core-core repulsion = 26161.063906 eV Total energy + Delta-G solvation = -4235.598978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.06934 -39.97666 -39.04824 -37.40566 -36.43193 -34.53509 -33.34681 -32.11277 -31.86639 -31.82781 -29.54085 -28.13884 -26.81046 -25.01110 -24.28710 -23.41491 -23.10750 -21.59714 -21.22923 -20.56400 -19.06594 -18.85797 -17.93281 -17.20487 -16.76655 -16.45721 -16.03998 -15.54800 -15.27036 -14.95544 -14.80182 -14.59098 -14.40230 -14.14944 -14.02819 -13.68306 -13.41296 -13.26269 -13.11136 -12.82006 -12.58875 -12.49965 -12.40151 -12.23416 -11.80085 -11.66825 -11.42086 -11.25120 -11.13746 -11.03769 -10.84176 -10.46018 -10.27831 -10.20390 -10.10021 -9.68084 -9.60600 -9.58850 -9.21704 -8.98164 -8.91863 -8.80178 -6.86759 -5.76883 -3.07852 0.32612 0.83885 2.69140 2.98329 3.26564 3.39049 3.43502 3.46516 3.55102 3.96631 4.22546 4.36079 4.44959 4.51548 4.67038 4.68978 4.82585 4.98314 5.00173 5.08294 5.10348 5.21441 5.23813 5.26139 5.35336 5.50288 5.51565 5.58613 5.60645 5.64474 5.67029 5.74454 5.89792 5.97582 6.12291 6.14311 6.24040 6.31488 6.34016 6.53794 6.64772 6.90852 7.20663 7.29394 7.41389 7.49570 7.60080 7.69949 7.98611 8.12322 9.04525 9.71331 10.59974 11.41020 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009022 B = 0.003030 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.861486 B = 9237.465283 C =11582.328474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.174 3.826 3 C -0.190 4.190 4 C -0.021 4.021 5 C -0.211 4.211 6 C 0.564 3.436 7 O -0.526 6.526 8 N -0.717 5.717 9 C 0.132 3.868 10 C 0.057 3.943 11 H 0.072 0.928 12 C -0.143 4.143 13 C -0.139 4.139 14 C 0.058 3.942 15 C 0.175 3.825 16 N -0.605 5.605 17 C -0.222 4.222 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.105 3.895 26 O -0.330 6.330 27 C 0.374 3.626 28 O -0.459 6.459 29 N -0.511 5.511 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.404 0.596 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.254 0.746 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 -9.898 16.900 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.036 3.964 3 C -0.209 4.209 4 C -0.047 4.047 5 C -0.217 4.217 6 C 0.350 3.650 7 O -0.403 6.403 8 N -0.369 5.369 9 C 0.008 3.992 10 C -0.002 4.002 11 H 0.089 0.911 12 C -0.182 4.182 13 C -0.178 4.178 14 C 0.017 3.983 15 C 0.049 3.951 16 N -0.331 5.331 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.021 4.021 26 O -0.249 6.249 27 C 0.194 3.806 28 O -0.266 6.266 29 N -0.231 5.231 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.240 0.760 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -6.915 -11.362 15.859 20.698 hybrid contribution 0.017 1.971 -0.134 1.975 sum -6.897 -9.391 15.724 19.571 Atomic orbital electron populations 1.20837 0.88090 1.03925 1.03770 1.21293 0.97118 0.87219 0.90769 1.21945 0.94525 0.99730 1.04747 1.21821 0.94719 0.97229 0.90939 1.21095 0.94913 0.94469 1.11249 1.17772 0.85975 0.84295 0.76993 1.90802 1.71778 1.28406 1.49314 1.45795 1.07389 1.08766 1.74959 1.21446 0.79005 0.95703 1.03033 1.23398 0.94510 0.92079 0.90178 0.91051 1.23080 0.94642 0.98799 1.01655 1.22790 0.98962 0.95912 1.00153 1.23811 0.86426 0.87774 1.00326 1.22292 0.91967 0.89827 0.90974 1.45795 1.39750 1.46834 1.00703 1.18966 1.08087 1.19709 0.88202 0.90309 1.24798 0.99548 0.99741 0.96192 1.69821 1.40394 1.38541 1.07747 0.86146 0.79825 0.80234 0.79858 1.21650 1.21692 1.20595 1.23010 0.97146 0.92674 0.89306 1.88902 1.51219 1.44304 1.40444 1.19116 0.86072 0.85091 0.90314 1.84738 1.76389 1.31820 1.33663 1.67144 1.09317 1.30440 1.16232 0.89656 0.90096 0.90038 0.83531 0.83583 0.75979 0.90351 0.90183 0.90490 0.90241 0.90803 0.90194 0.94145 0.90617 0.93622 0.93696 0.94167 0.73691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.16 36.00 0.37 -0.34 16 2 C 0.17 1.73 6.78 -82.53 -0.56 1.17 16 3 C -0.19 -1.71 9.71 -39.50 -0.38 -2.09 16 4 C -0.02 -0.22 9.64 -38.89 -0.37 -0.59 16 5 C -0.21 -2.67 5.90 -104.69 -0.62 -3.29 16 6 C 0.56 7.99 7.77 -12.48 -0.10 7.90 16 7 O -0.53 -8.82 15.19 -16.49 -0.25 -9.07 16 8 N -0.72 -9.14 5.47 -61.36 -0.34 -9.47 16 9 C 0.13 1.64 5.43 -4.04 -0.02 1.62 16 10 C 0.06 0.73 3.39 -25.65 -0.09 0.64 16 11 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.14 -1.63 6.60 -24.59 -0.16 -1.79 16 13 C -0.14 -1.90 6.47 -25.45 -0.16 -2.07 16 14 C 0.06 1.06 1.53 -90.29 -0.14 0.92 16 15 C 0.17 4.12 6.81 -3.27 -0.02 4.10 16 16 N -0.60 -15.54 3.70 -181.60 -0.67 -16.21 16 17 C -0.22 -6.27 10.69 -15.06 -0.16 -6.43 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.51 11.52 55.49 0.64 -26.88 16 21 Si 0.91 22.22 29.56 -169.99 -5.02 17.19 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.11 2.10 8.34 -3.27 -0.03 2.07 16 26 O -0.33 -5.99 10.95 -35.23 -0.39 -6.37 16 27 C 0.37 4.96 7.77 -16.61 -0.13 4.83 16 28 O -0.46 -6.01 11.66 -39.73 -0.46 -6.47 16 29 N -0.51 -6.38 10.28 -9.21 -0.09 -6.48 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.15 1.25 6.52 -52.49 -0.34 0.90 16 35 H 0.40 4.69 6.57 -40.82 -0.27 4.42 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.89 8.05 -51.93 -0.42 0.48 16 40 H 0.07 0.89 7.89 -51.93 -0.41 0.48 16 41 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 42 H 0.04 0.95 8.10 -51.93 -0.42 0.53 16 43 H 0.08 2.04 7.38 -51.93 -0.38 1.65 16 44 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 47 H 0.40 3.42 9.06 45.56 0.41 3.83 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -36.86 390.99 -9.38 -46.24 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.01 Total: 5.25 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -2.68 Total: 6.38 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.46 Total: -59.04 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.10 Total: -21.92 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.86 -9.38 -46.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053668547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.047 kcal (2) G-P(sol) polarization free energy of solvation -36.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds