Wall clock time and date at job start Wed Apr 1 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38353 * 119.40987 * 2 1 4 4 C 1.38337 * 119.45721 * 180.02562 * 3 2 1 5 5 C 1.39983 * 118.35288 * 359.97438 * 4 3 2 6 6 C 1.47515 * 120.59878 * 180.02562 * 5 4 3 7 7 O 1.21592 * 120.00347 * 179.97438 * 6 5 4 8 8 N 1.34781 * 120.00209 * 0.02562 * 6 5 4 9 9 C 1.46504 * 120.00053 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.46745 * 180.02562 * 9 8 6 11 11 H 1.09006 * 110.52853 * 59.29794 * 10 9 8 12 12 C 1.55058 * 110.59003 * 182.10746 * 10 9 8 13 13 C 1.54991 * 102.12490 * 155.28405 * 12 10 9 14 14 C 1.53443 * 103.85046 * 339.14360 * 13 12 10 15 15 C 1.53212 * 115.01713 * 227.72679 * 14 13 12 16 16 N 1.47716 * 85.89997 * 220.50231 * 15 14 13 17 17 C 1.36939 * 134.43887 * 204.16804 * 16 15 14 18 18 H 1.07993 * 120.00492 * 173.43225 * 17 16 15 19 19 C 1.38813 * 119.99296 * 353.42619 * 17 16 15 20 20 N 1.31616 * 120.00577 * 5.08028 * 19 17 16 21 21 Si 1.86806 * 119.99752 * 185.07921 * 19 17 16 22 22 H 1.48497 * 109.46860 * 94.98738 * 21 19 17 23 23 H 1.48495 * 109.46994 * 214.99013 * 21 19 17 24 24 H 1.48504 * 109.46793 * 334.98788 * 21 19 17 25 25 C 1.47719 * 91.13243 * 24.11461 * 16 15 14 26 26 O 1.42972 * 108.16865 * 358.31868 * 14 13 12 27 27 C 1.40282 * 118.80455 * 0.28000 * 5 4 3 28 28 O 1.35421 * 119.80103 * 179.70431 * 27 5 4 29 29 N 1.31886 * 119.40550 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47817 * 89.99836 * 1 2 3 31 31 H 1.09001 * 109.47237 * 210.00214 * 1 2 3 32 32 H 1.09000 * 109.47088 * 329.99636 * 1 2 3 33 33 H 1.08000 * 120.27188 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.82070 * 179.97438 * 4 3 2 35 35 H 0.97005 * 119.99800 * 0.02562 * 8 6 5 36 36 H 1.08992 * 109.46956 * 60.00172 * 9 8 6 37 37 H 1.09000 * 109.46793 * 299.99840 * 9 8 6 38 38 H 1.09003 * 110.87020 * 273.43903 * 12 10 9 39 39 H 1.09001 * 110.87079 * 36.91613 * 12 10 9 40 40 H 1.09005 * 110.54951 * 97.72815 * 13 12 10 41 41 H 1.09000 * 110.55265 * 220.40198 * 13 12 10 42 42 H 1.09003 * 113.80580 * 334.74296 * 15 14 13 43 43 H 1.09000 * 113.80754 * 106.25583 * 15 14 13 44 44 H 0.96999 * 120.00640 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.80707 * 221.64144 * 25 16 15 46 46 H 1.09006 * 113.80433 * 90.13137 * 25 16 15 47 47 H 0.96706 * 114.00354 * 89.99991 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 -0.0005 5 6 4.2355 -0.0250 -0.0005 6 6 5.7096 -0.0816 -0.0005 7 8 6.2768 -1.1571 0.0000 8 7 6.4278 1.0589 0.0000 9 6 7.8918 1.0027 0.0006 10 6 8.4567 2.4245 0.0017 11 1 8.1131 2.9717 0.8797 12 6 10.0061 2.3958 -0.0510 13 6 10.3362 3.7749 -0.6766 14 6 9.0347 4.1794 -1.3816 15 6 9.2054 4.6797 -2.8197 16 7 8.1897 5.6951 -2.4744 17 6 7.2965 6.4416 -3.1957 18 1 6.5704 7.0568 -2.6851 19 6 7.3245 6.4076 -4.5831 20 7 8.1410 5.5837 -5.2049 21 14 6.2032 7.5314 -5.5677 22 1 6.9402 8.7667 -5.9361 23 1 5.7609 6.8323 -6.8009 24 1 5.0170 7.8883 -4.7486 25 6 8.5220 5.5822 -1.0396 26 8 8.0872 3.1227 -1.2091 27 6 3.4757 -1.2042 -0.0060 28 8 4.0990 -2.4064 -0.0121 29 7 2.1545 -1.1489 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6412 2.1375 -0.0004 34 1 4.1223 2.1343 -0.0010 35 1 5.9754 1.9170 0.0007 36 1 8.2354 0.4755 -0.8893 37 1 8.2347 0.4751 0.8906 38 1 10.4273 2.3130 0.9509 39 1 10.3580 1.5832 -0.6866 40 1 10.5907 4.4962 0.1000 41 1 11.1509 3.6841 -1.3949 42 1 10.1912 5.0962 -3.0266 43 1 8.8757 3.9669 -3.5755 44 1 8.1603 5.5596 -6.1744 45 1 7.6508 5.5846 -0.3846 46 1 9.3034 6.2688 -0.7136 47 1 4.2805 -2.7600 0.8695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053668547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:04 Heat of formation + Delta-G solvation = -50.688917 kcal Electronic energy + Delta-G solvation = -30397.941816 eV Core-core repulsion = 26161.063906 eV Total energy + Delta-G solvation = -4236.877911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.97070 -41.29819 -40.13009 -38.33241 -37.91483 -35.71581 -34.31104 -33.97363 -33.01241 -32.63892 -30.80986 -29.20809 -28.28057 -26.72744 -25.56078 -24.33996 -24.04064 -23.08476 -22.31068 -21.59222 -20.57154 -19.77049 -18.90097 -18.72146 -18.11008 -17.59145 -16.98969 -16.96317 -16.52919 -16.12475 -16.11235 -15.87466 -15.43387 -15.37027 -15.07287 -14.88709 -14.84054 -14.42548 -14.17029 -14.04228 -13.65062 -13.56166 -13.18533 -13.14224 -13.03195 -12.97176 -12.81189 -12.65500 -12.64973 -12.49557 -12.27312 -12.11786 -11.62536 -11.39090 -11.28579 -11.21823 -11.05749 -10.90584 -10.52124 -10.35507 -10.23508 -9.84651 -8.89914 -7.90866 -5.22461 -0.53618 0.02714 1.43792 1.46139 1.54934 1.71289 2.00126 2.43380 2.47312 2.67211 2.76692 3.28824 3.41055 3.44077 3.58656 3.64646 3.66234 3.78766 3.83352 3.90447 4.06566 4.16530 4.24723 4.39736 4.46922 4.53225 4.61291 4.64858 4.76688 4.78301 4.84066 4.87384 4.90452 4.99847 5.01708 5.05403 5.10838 5.14741 5.20521 5.25394 5.32386 5.37267 5.47091 5.52896 5.92964 6.27841 6.37102 6.52007 6.78132 6.91357 7.07766 7.61666 8.57717 9.27093 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009022 B = 0.003030 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.861486 B = 9237.465283 C =11582.328474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.183 4.183 4 C -0.022 4.022 5 C -0.230 4.230 6 C 0.561 3.439 7 O -0.560 6.560 8 N -0.712 5.712 9 C 0.133 3.867 10 C 0.057 3.943 11 H 0.097 0.903 12 C -0.134 4.134 13 C -0.133 4.133 14 C 0.080 3.920 15 C 0.166 3.834 16 N -0.638 5.638 17 C -0.231 4.231 18 H 0.085 0.915 19 C -0.070 4.070 20 N -0.955 5.955 21 Si 0.976 3.024 22 H -0.287 1.287 23 H -0.298 1.298 24 H -0.263 1.263 25 C 0.108 3.892 26 O -0.364 6.364 27 C 0.357 3.643 28 O -0.478 6.478 29 N -0.533 5.533 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.182 0.818 34 H 0.163 0.837 35 H 0.410 0.590 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.028 0.972 44 H 0.246 0.754 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 -8.522 19.429 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.202 4.202 4 C -0.048 4.048 5 C -0.237 4.237 6 C 0.349 3.651 7 O -0.440 6.440 8 N -0.363 5.363 9 C 0.010 3.990 10 C 0.000 4.000 11 H 0.115 0.885 12 C -0.172 4.172 13 C -0.172 4.172 14 C 0.039 3.961 15 C 0.041 3.959 16 N -0.365 5.365 17 C -0.359 4.359 18 H 0.103 0.897 19 C -0.262 4.262 20 N -0.604 5.604 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.225 1.225 24 H -0.188 1.188 25 C -0.017 4.017 26 O -0.284 6.284 27 C 0.177 3.823 28 O -0.288 6.288 29 N -0.254 5.254 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.199 0.801 34 H 0.180 0.820 35 H 0.247 0.753 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -7.808 -9.965 18.451 22.377 hybrid contribution 0.228 1.525 -0.864 1.768 sum -7.581 -8.440 17.587 20.929 Atomic orbital electron populations 1.20967 0.85532 1.05330 1.04573 1.21993 0.98813 0.86908 0.89292 1.22340 0.94043 1.00806 1.02994 1.22078 0.95580 0.96851 0.90263 1.21045 0.94057 0.95410 1.13198 1.18044 0.86724 0.84058 0.76320 1.90771 1.72560 1.29562 1.51140 1.45789 1.07595 1.08699 1.74262 1.21478 0.78849 0.95695 1.02978 1.23656 0.95797 0.91665 0.88892 0.88539 1.23100 0.93273 0.97185 1.03647 1.22766 0.95997 0.97897 1.00523 1.23346 0.88853 0.87560 0.96384 1.22224 0.91037 0.89201 0.93484 1.46205 1.39799 1.47025 1.03432 1.19407 1.08535 1.19081 0.88881 0.89733 1.25656 1.01665 1.01509 0.97415 1.70034 1.42601 1.40475 1.07277 0.85090 0.78484 0.78027 0.77973 1.21366 1.22495 1.18785 1.23218 0.98105 0.93991 0.86402 1.88867 1.51745 1.44546 1.43205 1.19308 0.86633 0.85186 0.91184 1.84680 1.76655 1.32269 1.35174 1.67198 1.09000 1.31975 1.17245 0.88931 0.90195 0.87175 0.80096 0.81968 0.75295 0.92743 0.87891 0.86530 0.90493 0.88029 0.90240 0.94771 0.95367 0.94471 0.92568 0.91921 0.72157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.16 71.24 0.72 -0.40 16 2 C 0.17 3.06 6.78 42.58 0.29 3.35 16 3 C -0.18 -2.86 9.71 22.32 0.22 -2.64 16 4 C -0.02 -0.42 9.64 22.72 0.22 -0.20 16 5 C -0.23 -5.86 5.90 -19.91 -0.12 -5.98 16 6 C 0.56 16.08 7.77 86.69 0.67 16.75 16 7 O -0.56 -19.33 15.19 16.81 0.26 -19.08 16 8 N -0.71 -17.63 5.47 -466.29 -2.55 -20.18 16 9 C 0.13 3.15 5.43 86.38 0.47 3.62 16 10 C 0.06 1.32 3.39 31.30 0.11 1.43 16 11 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 12 C -0.13 -2.58 6.60 31.98 0.21 -2.36 16 13 C -0.13 -3.24 6.47 31.42 0.20 -3.04 16 14 C 0.08 2.83 1.53 -10.46 -0.02 2.82 16 15 C 0.17 8.06 6.81 86.21 0.59 8.65 16 16 N -0.64 -33.01 3.70 -733.89 -2.72 -35.72 16 17 C -0.23 -13.11 10.69 84.03 0.90 -12.21 16 18 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 20 N -0.95 -59.46 11.52 21.65 0.25 -59.21 16 21 Si 0.98 46.32 29.56 68.60 2.03 48.35 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.11 4.11 8.34 86.22 0.72 4.83 16 26 O -0.36 -12.90 10.95 -148.98 -1.63 -14.53 16 27 C 0.36 9.67 7.77 85.13 0.66 10.33 16 28 O -0.48 -13.17 11.66 -66.35 -0.77 -13.95 16 29 N -0.53 -13.23 10.28 -296.06 -3.04 -16.28 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 0.52 8.07 -2.39 -0.02 0.51 16 33 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.16 2.47 6.52 -2.91 -0.02 2.45 16 35 H 0.41 9.03 6.57 -92.70 -0.61 8.42 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 40 H 0.10 1.96 7.89 -2.38 -0.02 1.94 16 41 H 0.08 1.97 7.94 -2.39 -0.02 1.95 16 42 H 0.03 1.67 8.10 -2.39 -0.02 1.65 16 43 H 0.03 1.60 7.38 -2.39 -0.02 1.59 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.06 2.15 8.07 -2.38 -0.02 2.13 16 47 H 0.42 7.71 9.06 -74.05 -0.67 7.04 16 Total: -1.00 -84.52 390.99 -2.13 -86.66 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.26 Total: 22.58 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 6.31 Total: 21.36 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -8.06 Total: -131.39 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -2.15 Total: -47.56 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -84.52 -2.13 -86.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053668547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.968 kcal (2) G-P(sol) polarization free energy of solvation -84.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds