Wall clock time and date at job start Wed Apr 1 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36397 * 120.34575 * 2 1 4 4 C 1.40196 * 119.26649 * 179.97438 * 3 2 1 5 5 C 1.35344 * 119.94563 * 359.97438 * 4 3 2 6 6 N 1.35768 * 120.70520 * 0.03121 * 5 4 3 7 7 C 1.46503 * 119.62252 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46848 * 89.99761 * 7 6 5 9 9 O 1.21276 * 120.00555 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99744 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99924 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.73123 * 34.30586 * 11 10 8 13 13 C 1.54459 * 110.82533 * 270.88318 * 11 10 8 14 14 O 1.43523 * 107.57867 * 220.41262 * 13 11 10 15 15 C 1.42544 * 109.63485 * 359.37057 * 14 13 11 16 16 C 1.52955 * 116.15758 * 253.32603 * 15 14 13 17 17 N 1.47772 * 85.80496 * 218.94811 * 16 15 14 18 18 C 1.36938 * 134.41172 * 203.90117 * 17 16 15 19 19 H 1.07995 * 120.00298 * 173.53684 * 18 17 16 20 20 C 1.38812 * 119.99808 * 353.53906 * 18 17 16 21 21 N 1.31616 * 120.00117 * 5.08552 * 20 18 17 22 22 Si 1.86800 * 120.00139 * 185.09055 * 20 18 17 23 23 H 1.48503 * 109.47181 * 94.98263 * 22 20 18 24 24 H 1.48495 * 109.47383 * 214.98599 * 22 20 18 25 25 H 1.48497 * 109.46706 * 334.98701 * 22 20 18 26 26 C 1.47775 * 91.18226 * 23.91752 * 17 16 15 27 27 C 1.54258 * 106.60685 * 22.89068 * 15 14 13 28 28 C 1.34659 * 120.74937 * 0.24467 * 6 5 4 29 29 O 1.22057 * 119.98396 * 179.70411 * 28 6 5 30 30 H 1.08991 * 109.47663 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47155 * 119.99869 * 1 2 3 32 32 H 1.09005 * 109.46887 * 239.99861 * 1 2 3 33 33 H 1.08004 * 120.36452 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.02966 * 180.02562 * 4 3 2 35 35 H 1.08008 * 119.64923 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.46652 * 209.99048 * 7 6 5 37 37 H 1.08989 * 109.47059 * 329.99492 * 7 6 5 38 38 H 0.97003 * 119.99967 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.83844 * 339.92545 * 13 11 10 40 40 H 1.08998 * 109.83244 * 100.90630 * 13 11 10 41 41 H 1.09005 * 113.82037 * 333.17031 * 16 15 14 42 42 H 1.08997 * 113.81810 * 104.73008 * 16 15 14 43 43 H 0.97000 * 120.00499 * 179.97438 * 21 20 18 44 44 H 1.08996 * 113.82492 * 221.85670 * 26 17 16 45 45 H 1.09007 * 113.92796 * 90.31395 * 26 17 16 46 46 H 1.08997 * 111.33472 * 207.20429 * 27 15 14 47 47 H 1.09004 * 111.08992 * 82.89166 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1771 0.0000 4 6 3.5978 1.1507 0.0005 5 6 4.2512 -0.0346 0.0016 6 7 3.5636 -1.2053 0.0015 7 6 4.2950 -2.4747 0.0021 8 6 4.5451 -2.9096 1.4231 9 8 4.1517 -2.2263 2.3446 10 7 5.2061 -4.0579 1.6699 11 6 5.4498 -4.4805 3.0513 12 1 4.6200 -4.1901 3.6957 13 6 6.7818 -3.9007 3.5761 14 8 7.4281 -4.9262 4.3444 15 6 6.6141 -6.0962 4.3622 16 6 5.8966 -6.3985 5.6788 17 7 6.2088 -7.8153 5.3981 18 6 5.6617 -9.0111 5.7802 19 1 6.0207 -9.9325 5.3461 20 6 4.6454 -9.0388 6.7254 21 7 4.1389 -7.9125 7.1804 22 14 3.9968 -10.6748 7.3516 23 1 4.6962 -11.0352 8.6112 24 1 2.5387 -10.5633 7.6096 25 1 4.2401 -11.7267 6.3321 26 6 7.3478 -7.4262 4.5407 27 6 5.6965 -6.0138 3.1250 28 6 2.2171 -1.2128 -0.0046 29 8 1.6130 -2.2734 -0.0101 30 1 -0.3634 1.0275 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 -0.3633 -0.5139 0.8900 33 1 1.6677 2.1191 0.0004 34 1 4.1558 2.0754 0.0010 35 1 5.3312 -0.0493 0.0024 36 1 3.7053 -3.2339 -0.5118 37 1 5.2476 -2.3453 -0.5114 38 1 5.5211 -4.6043 0.9328 39 1 7.4155 -3.6120 2.7375 40 1 6.5847 -3.0344 4.2075 41 1 6.4042 -6.0016 6.5580 42 1 4.8308 -6.1709 5.6615 43 1 3.4286 -7.9318 7.8406 44 1 7.4289 -8.0107 3.6243 45 1 8.2939 -7.3388 5.0752 46 1 4.7642 -6.5550 3.2859 47 1 6.2085 -6.3732 2.2323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053801912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:49 Heat of formation + Delta-G solvation = -10.959563 kcal Electronic energy + Delta-G solvation = -30382.327611 eV Core-core repulsion = 26147.172494 eV Total energy + Delta-G solvation = -4235.155117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80398 -40.28110 -39.16588 -37.12458 -36.34540 -35.42238 -34.64167 -32.11005 -31.64327 -30.65269 -28.65726 -27.87341 -27.42817 -25.83516 -24.96103 -23.62540 -22.74101 -22.08311 -21.64620 -20.75012 -18.80177 -17.96056 -17.80030 -17.63197 -16.80793 -16.60216 -16.28068 -15.62746 -15.47627 -15.18701 -15.11881 -14.74379 -14.60595 -14.28899 -14.05840 -13.74921 -13.51718 -13.13284 -13.03275 -12.91900 -12.73074 -12.55382 -12.45022 -12.19444 -11.96640 -11.81471 -11.69861 -11.48094 -11.15652 -10.95220 -10.84615 -10.78258 -10.57908 -10.35846 -10.17691 -10.01945 -9.88076 -9.57579 -9.22973 -8.82704 -8.78736 -8.11554 -6.92462 -5.80926 -3.13565 0.54154 1.65153 2.12590 2.29738 2.89135 3.38557 3.42920 3.43401 3.46021 4.15396 4.16765 4.23903 4.33812 4.47933 4.51462 4.63656 4.68527 4.83922 4.88126 4.95998 5.05927 5.15539 5.19688 5.27246 5.32775 5.34344 5.52227 5.52895 5.54628 5.78978 5.82820 5.88990 5.93791 6.05888 6.07959 6.22846 6.26007 6.31081 6.38908 6.56036 6.65723 6.76189 6.99016 7.18812 7.20352 7.48483 7.65857 7.79131 7.92260 7.93245 9.00495 9.66730 10.54605 11.36663 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002258 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.407024 B =12398.170630 C =13477.164747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.206 4.206 3 C -0.024 4.024 4 C -0.226 4.226 5 C 0.133 3.867 6 N -0.480 5.480 7 C 0.071 3.929 8 C 0.500 3.500 9 O -0.521 6.521 10 N -0.712 5.712 11 C 0.112 3.888 12 H 0.108 0.892 13 C 0.047 3.953 14 O -0.368 6.368 15 C 0.055 3.945 16 C 0.160 3.840 17 N -0.604 5.604 18 C -0.225 4.225 19 H 0.082 0.918 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.130 3.870 27 C -0.121 4.121 28 C 0.523 3.477 29 O -0.544 6.544 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.403 0.597 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.255 0.745 44 H 0.049 0.951 45 H 0.044 0.956 46 H 0.100 0.900 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 19.278 -20.419 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.210 4.210 3 C -0.046 4.046 4 C -0.249 4.249 5 C 0.007 3.993 6 N -0.191 5.191 7 C -0.055 4.055 8 C 0.284 3.716 9 O -0.396 6.396 10 N -0.365 5.365 11 C 0.007 3.993 12 H 0.126 0.874 13 C -0.031 4.031 14 O -0.285 6.285 15 C 0.014 3.986 16 C 0.034 3.966 17 N -0.333 5.333 18 C -0.352 4.352 19 H 0.100 0.900 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.004 3.996 27 C -0.159 4.159 28 C 0.324 3.676 29 O -0.425 6.425 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.151 0.849 34 H 0.163 0.837 35 H 0.177 0.823 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.238 0.762 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.118 0.882 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.354 18.874 -19.465 27.147 hybrid contribution -0.131 -1.026 0.176 1.049 sum 1.223 17.848 -19.289 26.308 Atomic orbital electron populations 1.20416 0.89018 1.02019 1.02964 1.20797 0.97912 0.91893 1.10421 1.21348 0.93919 0.98002 0.91310 1.20596 0.94656 0.97202 1.12439 1.21871 0.98341 0.84758 0.94323 1.44981 1.07980 1.06351 1.59748 1.21791 0.99605 0.87785 0.96282 1.20698 0.78034 0.81657 0.91193 1.90785 1.49641 1.53523 1.45641 1.45837 1.58113 1.23590 1.08934 1.22692 0.98938 0.95131 0.82554 0.87450 1.23423 0.92417 0.91886 0.95367 1.88316 1.44713 1.22987 1.72515 1.24277 0.91931 0.85369 0.96996 1.22503 0.99045 0.83690 0.91372 1.45709 1.29591 1.01850 1.56153 1.18956 1.14408 0.83406 1.18471 0.89997 1.24850 0.99340 0.97213 0.98833 1.69833 1.28692 1.24493 1.33220 0.86112 0.77976 0.82774 0.78980 1.21544 1.21657 1.20503 1.22543 0.92486 0.89946 0.94674 1.23016 1.01798 0.93114 0.97933 1.16946 0.80352 0.91267 0.79018 1.90964 1.66399 1.32739 1.52415 0.91562 0.91336 0.91161 0.84867 0.83693 0.82288 0.85080 0.85925 0.76206 0.91816 0.91190 0.94491 0.91017 0.93470 0.93319 0.93867 0.88177 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.64 36.01 0.35 -0.48 16 2 C -0.21 -2.24 5.90 -104.42 -0.62 -2.85 16 3 C -0.02 -0.19 9.72 -39.51 -0.38 -0.57 16 4 C -0.23 -1.47 10.01 -39.88 -0.40 -1.87 16 5 C 0.13 0.94 10.28 -16.84 -0.17 0.77 16 6 N -0.48 -4.83 2.07 -121.06 -0.25 -5.08 16 7 C 0.07 0.58 5.82 -5.19 -0.03 0.55 16 8 C 0.50 5.98 7.90 -10.98 -0.09 5.89 16 9 O -0.52 -8.70 16.12 5.56 0.09 -8.61 16 10 N -0.71 -7.63 5.12 -51.79 -0.27 -7.90 16 11 C 0.11 1.61 3.33 -65.85 -0.22 1.39 16 12 H 0.11 1.86 7.63 -51.93 -0.40 1.47 16 13 C 0.05 0.69 7.58 37.92 0.29 0.98 16 14 O -0.37 -6.66 11.17 -35.23 -0.39 -7.06 16 15 C 0.05 1.06 1.48 -90.17 -0.13 0.92 16 16 C 0.16 3.87 6.89 -3.37 -0.02 3.85 16 17 N -0.60 -15.53 3.69 -183.17 -0.68 -16.21 16 18 C -0.23 -6.28 10.69 -15.06 -0.16 -6.44 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 21 N -0.92 -27.40 11.52 55.49 0.64 -26.76 16 22 Si 0.91 22.19 29.56 -169.99 -5.02 17.17 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 C 0.13 2.70 8.49 -3.38 -0.03 2.67 16 27 C -0.12 -1.92 6.05 -24.76 -0.15 -2.07 16 28 C 0.52 6.94 7.39 -15.45 -0.11 6.82 16 29 O -0.54 -9.16 16.08 4.87 0.08 -9.08 16 30 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.13 0.67 7.95 -52.48 -0.42 0.25 16 34 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.16 0.56 8.04 -52.48 -0.42 0.13 16 36 H 0.13 1.06 7.38 -51.93 -0.38 0.68 16 37 H 0.12 0.39 8.01 -51.93 -0.42 -0.02 16 38 H 0.40 2.92 8.53 -40.82 -0.35 2.57 16 39 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.89 7.36 -51.93 -0.38 1.50 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 45 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.10 1.83 8.05 -51.93 -0.42 1.41 16 47 H 0.08 1.02 7.98 -51.93 -0.41 0.61 16 LS Contribution 393.17 15.07 5.93 5.93 Total: -1.00 -38.39 393.17 -8.78 -47.17 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.93 Total: 1.12 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -1.98 Total: 9.31 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.55 Total: -55.95 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.23 Total: -24.74 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.39 -8.78 -47.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053801912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.212 kcal (2) G-P(sol) polarization free energy of solvation -38.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds