Wall clock time and date at job start Wed Apr 1 2020 05:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36397 * 120.34575 * 2 1 4 4 C 1.40196 * 119.26649 * 179.97438 * 3 2 1 5 5 C 1.35344 * 119.94563 * 359.97438 * 4 3 2 6 6 N 1.35768 * 120.70520 * 0.03121 * 5 4 3 7 7 C 1.46503 * 119.62252 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46848 * 89.99761 * 7 6 5 9 9 O 1.21276 * 120.00555 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99744 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99924 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.73123 * 34.30586 * 11 10 8 13 13 C 1.54459 * 110.82533 * 270.88318 * 11 10 8 14 14 O 1.43523 * 107.57867 * 220.41262 * 13 11 10 15 15 C 1.42544 * 109.63485 * 359.37057 * 14 13 11 16 16 C 1.52955 * 116.15758 * 253.32603 * 15 14 13 17 17 N 1.47772 * 85.80496 * 218.94811 * 16 15 14 18 18 C 1.36938 * 134.41172 * 203.90117 * 17 16 15 19 19 H 1.07995 * 120.00298 * 173.53684 * 18 17 16 20 20 C 1.38812 * 119.99808 * 353.53906 * 18 17 16 21 21 N 1.31616 * 120.00117 * 5.08552 * 20 18 17 22 22 Si 1.86800 * 120.00139 * 185.09055 * 20 18 17 23 23 H 1.48503 * 109.47181 * 94.98263 * 22 20 18 24 24 H 1.48495 * 109.47383 * 214.98599 * 22 20 18 25 25 H 1.48497 * 109.46706 * 334.98701 * 22 20 18 26 26 C 1.47775 * 91.18226 * 23.91752 * 17 16 15 27 27 C 1.54258 * 106.60685 * 22.89068 * 15 14 13 28 28 C 1.34659 * 120.74937 * 0.24467 * 6 5 4 29 29 O 1.22057 * 119.98396 * 179.70411 * 28 6 5 30 30 H 1.08991 * 109.47663 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47155 * 119.99869 * 1 2 3 32 32 H 1.09005 * 109.46887 * 239.99861 * 1 2 3 33 33 H 1.08004 * 120.36452 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.02966 * 180.02562 * 4 3 2 35 35 H 1.08008 * 119.64923 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.46652 * 209.99048 * 7 6 5 37 37 H 1.08989 * 109.47059 * 329.99492 * 7 6 5 38 38 H 0.97003 * 119.99967 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.83844 * 339.92545 * 13 11 10 40 40 H 1.08998 * 109.83244 * 100.90630 * 13 11 10 41 41 H 1.09005 * 113.82037 * 333.17031 * 16 15 14 42 42 H 1.08997 * 113.81810 * 104.73008 * 16 15 14 43 43 H 0.97000 * 120.00499 * 179.97438 * 21 20 18 44 44 H 1.08996 * 113.82492 * 221.85670 * 26 17 16 45 45 H 1.09007 * 113.92796 * 90.31395 * 26 17 16 46 46 H 1.08997 * 111.33472 * 207.20429 * 27 15 14 47 47 H 1.09004 * 111.08992 * 82.89166 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1771 0.0000 4 6 3.5978 1.1507 0.0005 5 6 4.2512 -0.0346 0.0016 6 7 3.5636 -1.2053 0.0015 7 6 4.2950 -2.4747 0.0021 8 6 4.5451 -2.9096 1.4231 9 8 4.1517 -2.2263 2.3446 10 7 5.2061 -4.0579 1.6699 11 6 5.4498 -4.4805 3.0513 12 1 4.6200 -4.1901 3.6957 13 6 6.7818 -3.9007 3.5761 14 8 7.4281 -4.9262 4.3444 15 6 6.6141 -6.0962 4.3622 16 6 5.8966 -6.3985 5.6788 17 7 6.2088 -7.8153 5.3981 18 6 5.6617 -9.0111 5.7802 19 1 6.0207 -9.9325 5.3461 20 6 4.6454 -9.0388 6.7254 21 7 4.1389 -7.9125 7.1804 22 14 3.9968 -10.6748 7.3516 23 1 4.6962 -11.0352 8.6112 24 1 2.5387 -10.5633 7.6096 25 1 4.2401 -11.7267 6.3321 26 6 7.3478 -7.4262 4.5407 27 6 5.6965 -6.0138 3.1250 28 6 2.2171 -1.2128 -0.0046 29 8 1.6130 -2.2734 -0.0101 30 1 -0.3634 1.0275 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 -0.3633 -0.5139 0.8900 33 1 1.6677 2.1191 0.0004 34 1 4.1558 2.0754 0.0010 35 1 5.3312 -0.0493 0.0024 36 1 3.7053 -3.2339 -0.5118 37 1 5.2476 -2.3453 -0.5114 38 1 5.5211 -4.6043 0.9328 39 1 7.4155 -3.6120 2.7375 40 1 6.5847 -3.0344 4.2075 41 1 6.4042 -6.0016 6.5580 42 1 4.8308 -6.1709 5.6615 43 1 3.4286 -7.9318 7.8406 44 1 7.4289 -8.0107 3.6243 45 1 8.2939 -7.3388 5.0752 46 1 4.7642 -6.5550 3.2859 47 1 6.2085 -6.3732 2.2323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053801912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:48 Heat of formation + Delta-G solvation = -39.828082 kcal Electronic energy + Delta-G solvation = -30383.579444 eV Core-core repulsion = 26147.172494 eV Total energy + Delta-G solvation = -4236.406950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.56523 -41.62263 -40.35465 -38.02228 -37.90006 -36.16372 -35.80675 -34.17935 -32.42656 -31.73454 -30.10479 -29.03312 -28.10013 -27.51672 -26.76378 -24.45075 -23.93188 -23.40191 -22.71496 -21.82502 -20.41267 -18.89978 -18.76742 -18.55423 -18.32855 -17.63466 -17.34571 -16.97758 -16.64316 -16.51022 -16.35629 -16.11351 -15.62619 -15.54182 -15.25031 -14.75652 -14.70223 -14.44497 -14.32045 -13.87252 -13.80568 -13.63443 -13.44460 -13.22932 -13.12655 -12.98441 -12.90124 -12.88780 -12.71293 -12.63856 -12.43783 -12.41263 -12.01047 -11.84044 -11.50196 -11.45202 -11.06634 -10.92087 -10.69701 -10.39155 -10.28073 -9.00574 -8.83410 -7.96542 -5.30993 -0.09768 0.95610 1.36019 1.43337 1.43913 1.45840 1.54812 2.02198 2.40762 2.68791 2.81056 3.15355 3.29160 3.45095 3.57603 3.62755 3.69018 3.72362 3.78980 3.98321 4.01597 4.03434 4.14664 4.23480 4.26338 4.37953 4.61124 4.65369 4.72780 4.74552 4.77956 4.79566 4.83399 4.89587 4.93019 4.99206 5.10184 5.16229 5.19167 5.26178 5.30936 5.44240 5.45510 5.68271 5.82260 6.05732 6.12702 6.34954 6.84035 6.96956 7.05783 7.54484 8.48290 9.21282 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002258 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.407024 B =12398.170630 C =13477.164747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.257 4.257 3 C -0.002 4.002 4 C -0.228 4.228 5 C 0.129 3.871 6 N -0.483 5.483 7 C 0.075 3.925 8 C 0.498 3.502 9 O -0.575 6.575 10 N -0.694 5.694 11 C 0.123 3.877 12 H 0.067 0.933 13 C 0.049 3.951 14 O -0.377 6.377 15 C 0.078 3.922 16 C 0.152 3.848 17 N -0.630 5.630 18 C -0.231 4.231 19 H 0.094 0.906 20 C -0.070 4.070 21 N -0.955 5.955 22 Si 0.981 3.019 23 H -0.288 1.288 24 H -0.297 1.297 25 H -0.260 1.260 26 C 0.132 3.868 27 C -0.110 4.110 28 C 0.500 3.500 29 O -0.605 6.605 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.164 0.836 34 H 0.183 0.817 35 H 0.204 0.796 36 H 0.130 0.870 37 H 0.186 0.814 38 H 0.425 0.575 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.009 0.991 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 20.519 -23.501 31.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.261 4.261 3 C -0.023 4.023 4 C -0.250 4.250 5 C 0.004 3.996 6 N -0.191 5.191 7 C -0.050 4.050 8 C 0.285 3.715 9 O -0.454 6.454 10 N -0.349 5.349 11 C 0.017 3.983 12 H 0.086 0.914 13 C -0.029 4.029 14 O -0.294 6.294 15 C 0.038 3.962 16 C 0.025 3.975 17 N -0.359 5.359 18 C -0.359 4.359 19 H 0.112 0.888 20 C -0.263 4.263 21 N -0.603 5.603 22 Si 0.808 3.192 23 H -0.215 1.215 24 H -0.224 1.224 25 H -0.184 1.184 26 C 0.007 3.993 27 C -0.148 4.148 28 C 0.304 3.696 29 O -0.492 6.492 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.182 0.818 34 H 0.201 0.799 35 H 0.221 0.779 36 H 0.147 0.853 37 H 0.203 0.797 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.027 0.973 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.294 20.120 -22.617 30.574 hybrid contribution -0.892 -1.251 1.132 1.908 sum 3.402 18.868 -21.485 28.796 Atomic orbital electron populations 1.20368 0.89178 1.03270 1.01170 1.20930 0.98391 0.92410 1.14337 1.21807 0.94932 0.97990 0.87614 1.21163 0.94245 0.98686 1.10870 1.22735 1.00390 0.83815 0.92678 1.45076 1.07352 1.08076 1.58615 1.22048 1.02155 0.87263 0.93547 1.21425 0.76679 0.81053 0.92370 1.90772 1.51646 1.55273 1.47661 1.45591 1.57762 1.23623 1.07883 1.22232 0.97720 0.94170 0.84203 0.91446 1.23590 0.92754 0.90493 0.96063 1.88294 1.44493 1.23168 1.73487 1.23745 0.91459 0.85685 0.95356 1.22389 0.97392 0.84091 0.93587 1.46025 1.31524 1.01590 1.56765 1.19424 1.13901 0.84731 1.17869 0.88849 1.25752 1.00244 1.00593 0.99666 1.70049 1.29455 1.26759 1.34052 0.85025 0.76551 0.79084 0.78499 1.21540 1.22421 1.18416 1.22687 0.91097 0.90686 0.94790 1.22907 1.00114 0.93855 0.97888 1.17438 0.81641 0.91366 0.79115 1.90906 1.67814 1.34511 1.56014 0.88589 0.92416 0.93914 0.81817 0.79927 0.77908 0.85258 0.79711 0.73583 0.87757 0.91971 0.97349 0.94396 0.94312 0.90181 0.93564 0.91015 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.64 71.24 0.69 -1.01 16 2 C -0.26 -5.64 5.90 -19.73 -0.12 -5.76 16 3 C 0.00 -0.02 9.72 22.32 0.22 0.19 16 4 C -0.23 -2.06 10.01 22.08 0.22 -1.84 16 5 C 0.13 1.33 10.28 83.42 0.86 2.19 16 6 N -0.48 -8.88 2.07 -655.06 -1.36 -10.24 16 7 C 0.07 1.01 5.82 85.63 0.50 1.51 16 8 C 0.50 11.16 7.90 87.66 0.69 11.86 16 9 O -0.58 -19.34 16.12 -3.02 -0.05 -19.38 16 10 N -0.69 -13.28 5.12 -436.17 -2.23 -15.52 16 11 C 0.12 3.47 3.33 46.34 0.15 3.63 16 12 H 0.07 2.48 7.63 -2.39 -0.02 2.46 16 13 C 0.05 1.33 7.58 72.48 0.55 1.87 16 14 O -0.38 -13.12 11.17 -148.98 -1.66 -14.78 16 15 C 0.08 2.99 1.48 -10.35 -0.02 2.98 16 16 C 0.15 7.73 6.89 86.12 0.59 8.33 16 17 N -0.63 -32.91 3.69 -739.53 -2.73 -35.64 16 18 C -0.23 -13.03 10.69 84.03 0.90 -12.13 16 19 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.95 -59.90 11.52 21.65 0.25 -59.65 16 22 Si 0.98 46.53 29.56 68.60 2.03 48.56 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 26 C 0.13 5.31 8.49 86.11 0.73 6.05 16 27 C -0.11 -3.35 6.05 31.87 0.19 -3.16 16 28 C 0.50 13.68 7.39 84.82 0.63 14.30 16 29 O -0.61 -21.99 16.08 -5.50 -0.09 -22.07 16 30 H 0.10 1.24 7.89 -2.39 -0.02 1.22 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.16 1.05 7.95 -2.91 -0.02 1.03 16 34 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 35 H 0.20 0.19 8.04 -2.91 -0.02 0.17 16 36 H 0.13 1.91 7.38 -2.38 -0.02 1.89 16 37 H 0.19 0.11 8.01 -2.39 -0.02 0.09 16 38 H 0.43 4.44 8.53 -92.71 -0.79 3.65 16 39 H 0.10 2.07 8.02 -2.39 -0.02 2.05 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.04 2.16 7.36 -2.39 -0.02 2.14 16 43 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 45 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 46 H 0.07 2.66 8.05 -2.39 -0.02 2.64 16 47 H 0.12 2.68 7.98 -2.38 -0.02 2.66 16 Total: -1.00 -93.44 393.17 1.61 -91.83 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.20 Total: 11.48 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 7.25 Total: 25.42 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -6.07 Total: -121.04 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -1.80 Total: -56.24 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -93.44 1.61 -91.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053801912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.999 kcal (2) G-P(sol) polarization free energy of solvation -93.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds