Wall clock time and date at job start Wed Apr 1 2020 04:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35674 * 116.99994 * 2 1 4 4 C 1.38905 * 119.62420 * 180.02562 * 3 2 1 5 5 C 1.39567 * 118.94933 * 179.71936 * 4 3 2 6 6 C 1.48160 * 120.89346 * 180.02562 * 5 4 3 7 7 O 1.21507 * 120.00118 * 179.97438 * 6 5 4 8 8 N 1.34782 * 119.99670 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99710 * 179.97438 * 8 6 5 10 10 H 1.08999 * 110.97647 * 322.29873 * 9 8 6 11 11 C 1.55002 * 111.11029 * 86.45456 * 9 8 6 12 12 O 1.43868 * 105.17825 * 154.03037 * 11 9 8 13 13 C 1.42533 * 109.62003 * 335.69911 * 12 11 9 14 14 C 1.53268 * 115.54107 * 231.50960 * 13 12 11 15 15 N 1.47709 * 85.91211 * 219.84058 * 14 13 12 16 16 C 1.36942 * 134.43224 * 204.13310 * 15 14 13 17 17 H 1.07999 * 119.99825 * 180.02562 * 16 15 14 18 18 C 1.38810 * 120.00487 * 0.03237 * 16 15 14 19 19 N 1.31628 * 119.99691 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00394 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46919 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47244 * 119.99514 * 20 18 16 23 23 H 1.48507 * 109.46977 * 239.99893 * 20 18 16 24 24 C 1.47703 * 91.12942 * 24.15437 * 15 14 13 25 25 C 1.53768 * 108.38334 * 1.85755 * 13 12 11 26 26 C 1.39969 * 118.21694 * 359.97438 * 5 4 3 27 27 C 1.37974 * 119.13209 * 359.97438 * 26 5 4 28 28 C 1.50708 * 119.50955 * 180.02562 * 27 26 5 29 29 N 1.31905 * 120.98195 * 0.02562 * 27 26 5 30 30 H 1.09000 * 109.46648 * 60.00843 * 1 2 3 31 31 H 1.08998 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46989 * 300.00869 * 1 2 3 33 33 H 1.08007 * 120.52302 * 359.69240 * 4 3 2 34 34 H 0.96992 * 119.99950 * 0.02562 * 8 6 5 35 35 H 1.09003 * 110.30273 * 272.95207 * 11 9 8 36 36 H 1.09000 * 110.30883 * 35.00317 * 11 9 8 37 37 H 1.09003 * 113.80112 * 334.08453 * 14 13 12 38 38 H 1.08997 * 113.80071 * 105.58798 * 14 13 12 39 39 H 0.96994 * 120.00071 * 180.02562 * 19 18 16 40 40 H 1.08996 * 113.80645 * 221.59798 * 24 15 14 41 41 H 1.09003 * 113.90926 * 90.10562 * 24 15 14 42 42 H 1.08994 * 110.92380 * 262.79339 * 25 13 12 43 43 H 1.09004 * 110.91768 * 139.14241 * 25 13 12 44 44 H 1.07997 * 120.43205 * 180.02562 * 26 5 4 45 45 H 1.09002 * 109.47478 * 90.00149 * 28 27 26 46 46 H 1.08999 * 109.46748 * 210.00429 * 28 27 26 47 47 H 1.09002 * 109.47003 * 329.99830 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2725 -0.0005 5 6 4.0515 2.5234 -0.0065 6 6 5.5284 2.6414 -0.0079 7 8 6.0502 3.7387 -0.0136 8 7 6.2931 1.5315 -0.0028 9 6 7.7534 1.6482 -0.0048 10 1 8.0777 2.4787 -0.6318 11 6 8.3041 1.7892 1.4373 12 8 9.6489 1.2815 1.3783 13 6 9.7703 0.3739 0.2860 14 6 10.3738 -0.9932 0.6267 15 7 11.0894 -0.8800 -0.6605 16 6 11.6323 -1.7804 -1.5379 17 1 12.1178 -1.4322 -2.4376 18 6 11.5586 -3.1406 -1.2711 19 7 10.9673 -3.5650 -0.1744 20 14 12.2986 -4.3688 -2.4683 21 1 12.9002 -3.6415 -3.6148 22 1 13.3479 -5.1616 -1.7788 23 1 11.2352 -5.2796 -2.9635 24 6 10.9855 0.5928 -0.6222 25 6 8.4209 0.3162 -0.4489 26 6 3.2396 3.6635 -0.0123 27 6 1.8682 3.5114 -0.0124 28 6 0.9859 4.7332 -0.0191 29 7 1.3179 2.3127 -0.0066 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 4.0232 0.3682 0.0040 34 1 5.8765 0.6556 0.0013 35 1 8.3082 2.8364 1.7398 36 1 7.7053 1.1984 2.1304 37 1 11.0297 -0.9799 1.4973 38 1 9.6435 -1.8018 0.6545 39 1 10.9161 -4.5155 0.0123 40 1 10.7402 1.0418 -1.5846 41 1 11.8234 1.0821 -0.1255 42 1 7.8346 -0.5416 -0.1196 43 1 8.5665 0.2951 -1.5290 44 1 3.6807 4.6492 -0.0174 45 1 0.7738 5.0226 -1.0484 46 1 0.0514 4.5093 0.4953 47 1 1.4944 5.5514 0.4909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053908590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:55 Heat of formation + Delta-G solvation = -14.474603 kcal Electronic energy + Delta-G solvation = -30005.651491 eV Core-core repulsion = 25770.343951 eV Total energy + Delta-G solvation = -4235.307540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30264 -40.25474 -39.28861 -38.20276 -36.31740 -34.79424 -33.55513 -32.16656 -32.10536 -30.28911 -28.74714 -28.15455 -26.96800 -25.71582 -24.96846 -24.73767 -23.11465 -22.04103 -21.58335 -20.64650 -18.89406 -18.77150 -17.46765 -17.12874 -16.80778 -16.46497 -16.36125 -16.03000 -15.40290 -15.11459 -15.05555 -14.90251 -14.59913 -14.48769 -14.38528 -13.81047 -13.69124 -13.36788 -13.04605 -12.88191 -12.79146 -12.62647 -12.52308 -12.22189 -12.09042 -11.65939 -11.46047 -11.39099 -11.13075 -10.92884 -10.81558 -10.72589 -10.53746 -10.40974 -10.26623 -10.05992 -10.00167 -9.60085 -9.27152 -8.85510 -8.84219 -8.73373 -6.93511 -5.81162 -3.13759 0.29553 0.72396 2.55307 2.57670 2.79738 3.36593 3.40226 3.42155 3.44707 3.69416 4.14163 4.22469 4.46273 4.47562 4.59799 4.64125 4.69726 4.90132 4.95004 4.98578 5.01570 5.06817 5.10503 5.16702 5.23314 5.25995 5.29140 5.33461 5.46390 5.51588 5.53974 5.65811 5.84880 5.86884 5.92445 6.07694 6.20326 6.28743 6.42551 6.57272 6.66024 6.79620 7.00548 7.18940 7.19290 7.39170 7.47907 7.66816 7.86092 7.92817 9.00431 9.66125 10.54299 11.36299 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013951 B = 0.002276 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.579036 B =12301.404143 C =13707.370569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.325 3.675 4 C -0.166 4.166 5 C -0.047 4.047 6 C 0.561 3.439 7 O -0.523 6.523 8 N -0.706 5.706 9 C 0.108 3.892 10 H 0.107 0.893 11 C 0.044 3.956 12 O -0.364 6.364 13 C 0.055 3.945 14 C 0.165 3.835 15 N -0.605 5.605 16 C -0.219 4.219 17 H 0.082 0.918 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.913 3.087 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.118 3.882 25 C -0.118 4.118 26 C -0.154 4.154 27 C 0.165 3.835 28 C -0.105 4.105 29 N -0.527 5.527 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.148 0.852 34 H 0.405 0.595 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.254 0.746 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.151 0.849 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.998 12.999 1.581 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.146 3.854 4 C -0.187 4.187 5 C -0.057 4.057 6 C 0.347 3.653 7 O -0.399 6.399 8 N -0.358 5.358 9 C 0.003 3.997 10 H 0.125 0.875 11 C -0.034 4.034 12 O -0.281 6.281 13 C 0.014 3.986 14 C 0.040 3.960 15 N -0.334 5.334 16 C -0.347 4.347 17 H 0.100 0.900 18 C -0.205 4.205 19 N -0.567 5.567 20 Si 0.743 3.257 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.009 4.009 25 C -0.156 4.156 26 C -0.175 4.175 27 C 0.029 3.971 28 C -0.162 4.162 29 N -0.253 5.253 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.165 0.835 34 H 0.241 0.759 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.169 0.831 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.129 13.164 1.598 26.660 hybrid contribution 0.772 -1.228 -0.634 1.583 sum -22.357 11.935 0.964 25.362 Atomic orbital electron populations 1.22893 0.76886 1.03218 1.02484 1.86278 1.23172 1.23981 1.87642 1.19594 0.88932 0.84741 0.92151 1.21213 0.92542 0.98533 1.06422 1.20136 0.93732 0.93210 0.98640 1.18064 0.85809 0.84653 0.76803 1.90798 1.74063 1.26174 1.48884 1.45810 1.06794 1.08956 1.74253 1.22896 0.78334 1.00331 0.98126 0.87515 1.23656 0.84675 0.99625 0.95455 1.88412 1.27391 1.61608 1.50711 1.24218 0.94539 0.92713 0.87103 1.22514 0.93717 0.91068 0.88717 1.45699 1.67101 0.99416 1.21140 1.19023 1.30216 0.85956 0.99488 0.90008 1.24800 1.01172 0.96704 0.97790 1.69829 1.47779 1.13728 1.25413 0.86030 0.78399 0.81285 0.79949 1.20421 1.21699 1.21686 1.22826 0.94226 0.87761 0.96037 1.22871 0.95060 0.95240 1.02397 1.21930 0.93224 0.99856 1.02460 1.20915 0.91647 0.91897 0.92688 1.20777 0.99114 0.92719 1.03590 1.66999 1.41236 0.98491 1.18553 0.92197 0.88382 0.92209 0.83457 0.75889 0.89730 0.92221 0.94665 0.90514 0.93618 0.93449 0.93879 0.89697 0.88887 0.83088 0.89876 0.90217 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.30 -2.99 10.47 -18.72 -0.20 -3.19 16 3 C 0.32 3.38 7.49 -17.16 -0.13 3.25 16 4 C -0.17 -1.62 9.55 -38.84 -0.37 -1.99 16 5 C -0.05 -0.49 5.91 -104.68 -0.62 -1.11 16 6 C 0.56 6.89 7.80 -12.18 -0.09 6.79 16 7 O -0.52 -7.94 16.20 5.36 0.09 -7.86 16 8 N -0.71 -8.00 5.20 -52.36 -0.27 -8.27 16 9 C 0.11 1.47 3.37 -65.57 -0.22 1.25 16 10 H 0.11 1.54 7.74 -51.93 -0.40 1.14 16 11 C 0.04 0.65 7.49 38.22 0.29 0.93 16 12 O -0.36 -6.68 11.14 -35.23 -0.39 -7.07 16 13 C 0.05 1.06 1.68 -90.05 -0.15 0.91 16 14 C 0.17 3.93 7.01 -3.25 -0.02 3.91 16 15 N -0.61 -15.42 3.67 -181.32 -0.67 -16.09 16 16 C -0.22 -6.07 10.70 -15.06 -0.16 -6.23 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -26.86 11.39 55.49 0.63 -26.22 16 20 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.12 2.48 8.37 -3.24 -0.03 2.45 16 25 C -0.12 -1.86 5.96 -25.02 -0.15 -2.01 16 26 C -0.15 -1.48 9.30 -39.03 -0.36 -1.84 16 27 C 0.16 1.46 6.77 -82.65 -0.56 0.90 16 28 C -0.10 -0.58 10.16 36.01 0.37 -0.21 16 29 N -0.53 -5.30 9.09 -9.59 -0.09 -5.39 16 30 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 33 H 0.15 1.17 6.53 -52.48 -0.34 0.83 16 34 H 0.40 3.73 6.64 -40.82 -0.27 3.46 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.95 7.05 -51.93 -0.37 1.58 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.05 0.92 7.98 -51.93 -0.41 0.51 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.30 7.85 -51.93 -0.41 0.89 16 43 H 0.09 1.51 7.83 -51.93 -0.41 1.11 16 44 H 0.15 1.34 7.74 -52.49 -0.41 0.93 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -33.53 392.25 -8.05 -41.58 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.78 Total: 1.75 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -1.26 Total: 8.00 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.39 Total: -55.98 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.50 Total: -18.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.53 -8.05 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053908590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.110 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds