Wall clock time and date at job start Wed Apr 1 2020 04:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35674 * 116.99994 * 2 1 4 4 C 1.38905 * 119.62420 * 180.02562 * 3 2 1 5 5 C 1.39567 * 118.94933 * 179.71936 * 4 3 2 6 6 C 1.48160 * 120.89346 * 180.02562 * 5 4 3 7 7 O 1.21507 * 120.00118 * 179.97438 * 6 5 4 8 8 N 1.34782 * 119.99670 * 359.97438 * 6 5 4 9 9 C 1.46498 * 119.99710 * 179.97438 * 8 6 5 10 10 H 1.08999 * 110.97647 * 322.29873 * 9 8 6 11 11 C 1.55002 * 111.11029 * 86.45456 * 9 8 6 12 12 O 1.43868 * 105.17825 * 154.03037 * 11 9 8 13 13 C 1.42533 * 109.62003 * 335.69911 * 12 11 9 14 14 C 1.53268 * 115.54107 * 231.50960 * 13 12 11 15 15 N 1.47709 * 85.91211 * 219.84058 * 14 13 12 16 16 C 1.36942 * 134.43224 * 204.13310 * 15 14 13 17 17 H 1.07999 * 119.99825 * 180.02562 * 16 15 14 18 18 C 1.38810 * 120.00487 * 0.03237 * 16 15 14 19 19 N 1.31628 * 119.99691 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00394 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46919 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47244 * 119.99514 * 20 18 16 23 23 H 1.48507 * 109.46977 * 239.99893 * 20 18 16 24 24 C 1.47703 * 91.12942 * 24.15437 * 15 14 13 25 25 C 1.53768 * 108.38334 * 1.85755 * 13 12 11 26 26 C 1.39969 * 118.21694 * 359.97438 * 5 4 3 27 27 C 1.37974 * 119.13209 * 359.97438 * 26 5 4 28 28 C 1.50708 * 119.50955 * 180.02562 * 27 26 5 29 29 N 1.31905 * 120.98195 * 0.02562 * 27 26 5 30 30 H 1.09000 * 109.46648 * 60.00843 * 1 2 3 31 31 H 1.08998 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46989 * 300.00869 * 1 2 3 33 33 H 1.08007 * 120.52302 * 359.69240 * 4 3 2 34 34 H 0.96992 * 119.99950 * 0.02562 * 8 6 5 35 35 H 1.09003 * 110.30273 * 272.95207 * 11 9 8 36 36 H 1.09000 * 110.30883 * 35.00317 * 11 9 8 37 37 H 1.09003 * 113.80112 * 334.08453 * 14 13 12 38 38 H 1.08997 * 113.80071 * 105.58798 * 14 13 12 39 39 H 0.96994 * 120.00071 * 180.02562 * 19 18 16 40 40 H 1.08996 * 113.80645 * 221.59798 * 24 15 14 41 41 H 1.09003 * 113.90926 * 90.10562 * 24 15 14 42 42 H 1.08994 * 110.92380 * 262.79339 * 25 13 12 43 43 H 1.09004 * 110.91768 * 139.14241 * 25 13 12 44 44 H 1.07997 * 120.43205 * 180.02562 * 26 5 4 45 45 H 1.09002 * 109.47478 * 90.00149 * 28 27 26 46 46 H 1.08999 * 109.46748 * 210.00429 * 28 27 26 47 47 H 1.09002 * 109.47003 * 329.99830 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2725 -0.0005 5 6 4.0515 2.5234 -0.0065 6 6 5.5284 2.6414 -0.0079 7 8 6.0502 3.7387 -0.0136 8 7 6.2931 1.5315 -0.0028 9 6 7.7534 1.6482 -0.0048 10 1 8.0777 2.4787 -0.6318 11 6 8.3041 1.7892 1.4373 12 8 9.6489 1.2815 1.3783 13 6 9.7703 0.3739 0.2860 14 6 10.3738 -0.9932 0.6267 15 7 11.0894 -0.8800 -0.6605 16 6 11.6323 -1.7804 -1.5379 17 1 12.1178 -1.4322 -2.4376 18 6 11.5586 -3.1406 -1.2711 19 7 10.9673 -3.5650 -0.1744 20 14 12.2986 -4.3688 -2.4683 21 1 12.9002 -3.6415 -3.6148 22 1 13.3479 -5.1616 -1.7788 23 1 11.2352 -5.2796 -2.9635 24 6 10.9855 0.5928 -0.6222 25 6 8.4209 0.3162 -0.4489 26 6 3.2396 3.6635 -0.0123 27 6 1.8682 3.5114 -0.0124 28 6 0.9859 4.7332 -0.0191 29 7 1.3179 2.3127 -0.0066 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 4.0232 0.3682 0.0040 34 1 5.8765 0.6556 0.0013 35 1 8.3082 2.8364 1.7398 36 1 7.7053 1.1984 2.1304 37 1 11.0297 -0.9799 1.4973 38 1 9.6435 -1.8018 0.6545 39 1 10.9161 -4.5155 0.0123 40 1 10.7402 1.0418 -1.5846 41 1 11.8234 1.0821 -0.1255 42 1 7.8346 -0.5416 -0.1196 43 1 8.5665 0.2951 -1.5290 44 1 3.6807 4.6492 -0.0174 45 1 0.7738 5.0226 -1.0484 46 1 0.0514 4.5093 0.4953 47 1 1.4944 5.5514 0.4909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053908590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:54 Heat of formation + Delta-G solvation = -39.287124 kcal Electronic energy + Delta-G solvation = -30006.727443 eV Core-core repulsion = 25770.343951 eV Total energy + Delta-G solvation = -4236.383492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.10840 -41.50190 -40.43626 -38.93938 -37.91512 -35.93711 -34.34400 -34.13682 -32.83833 -31.51893 -29.88908 -29.31089 -27.59070 -27.33393 -26.77356 -25.60801 -23.87437 -23.79419 -22.67448 -21.63506 -20.39545 -19.65033 -18.78309 -18.30846 -17.97639 -17.41569 -17.14589 -17.10229 -16.76208 -16.56264 -16.38812 -16.08936 -15.70204 -15.55286 -15.20877 -15.01283 -14.82790 -14.57312 -14.38127 -14.10774 -13.88114 -13.43110 -13.36405 -13.31544 -13.05618 -12.89738 -12.84000 -12.67287 -12.59733 -12.55221 -12.39652 -12.03844 -11.90774 -11.81343 -11.58251 -11.51662 -11.04032 -10.90109 -10.80441 -10.42938 -10.20554 -9.54452 -8.97655 -7.92224 -5.26781 -0.48803 0.01011 1.47008 1.48025 1.58301 1.65328 1.71276 2.02799 2.43554 2.64117 2.85871 3.07091 3.20708 3.30947 3.44229 3.49432 3.65934 3.72876 3.77763 3.88753 3.98465 3.98823 4.06878 4.38286 4.42268 4.43978 4.52731 4.64296 4.66765 4.73830 4.76552 4.79410 4.81628 4.85083 4.86583 4.89265 4.97185 4.99418 5.04230 5.11007 5.21180 5.30579 5.35877 5.48202 5.87210 6.12561 6.16045 6.26898 6.68617 6.89476 6.91467 7.57470 8.51702 9.25204 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013951 B = 0.002276 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.579036 B =12301.404143 C =13707.370569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.312 3.688 4 C -0.167 4.167 5 C -0.055 4.055 6 C 0.566 3.434 7 O -0.553 6.553 8 N -0.696 5.696 9 C 0.126 3.874 10 H 0.105 0.895 11 C 0.041 3.959 12 O -0.379 6.379 13 C 0.078 3.922 14 C 0.161 3.839 15 N -0.629 5.629 16 C -0.231 4.231 17 H 0.087 0.913 18 C -0.065 4.065 19 N -0.952 5.952 20 Si 0.981 3.019 21 H -0.265 1.265 22 H -0.295 1.295 23 H -0.289 1.289 24 C 0.115 3.885 25 C -0.110 4.110 26 C -0.158 4.158 27 C 0.163 3.837 28 C -0.103 4.103 29 N -0.535 5.535 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.060 0.940 33 H 0.162 0.838 34 H 0.417 0.583 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.010 0.990 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.157 0.843 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.558 13.910 0.725 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.133 3.867 4 C -0.189 4.189 5 C -0.066 4.066 6 C 0.353 3.647 7 O -0.432 6.432 8 N -0.349 5.349 9 C 0.021 3.979 10 H 0.123 0.877 11 C -0.037 4.037 12 O -0.296 6.296 13 C 0.037 3.963 14 C 0.035 3.965 15 N -0.357 5.357 16 C -0.359 4.359 17 H 0.105 0.895 18 C -0.258 4.258 19 N -0.601 5.601 20 Si 0.809 3.191 21 H -0.189 1.189 22 H -0.222 1.222 23 H -0.215 1.215 24 C -0.010 4.010 25 C -0.148 4.148 26 C -0.179 4.179 27 C 0.026 3.974 28 C -0.160 4.160 29 N -0.260 5.260 30 H 0.078 0.922 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.179 0.821 34 H 0.255 0.745 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.175 0.825 45 H 0.113 0.887 46 H 0.102 0.898 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.711 14.089 0.737 28.455 hybrid contribution 1.207 -1.443 -0.308 1.907 sum -23.503 12.646 0.429 26.693 Atomic orbital electron populations 1.23092 0.75491 1.04754 1.02485 1.86260 1.24641 1.23863 1.87590 1.19797 0.89319 0.85111 0.92491 1.21329 0.92656 0.98781 1.06098 1.20009 0.92633 0.93992 0.99964 1.18246 0.86440 0.84121 0.75848 1.90785 1.74716 1.27259 1.50402 1.45654 1.05758 1.09601 1.73866 1.22572 0.79461 0.98745 0.97168 0.87718 1.23861 0.83118 1.00277 0.96424 1.88388 1.29739 1.61184 1.50290 1.23721 0.95541 0.90025 0.86974 1.22409 0.93191 0.93379 0.87545 1.45998 1.67175 1.01282 1.21282 1.19409 1.29736 0.86760 1.00022 0.89496 1.25642 1.02067 0.98495 0.99596 1.70010 1.49222 1.13635 1.27201 0.84983 0.77289 0.78709 0.78158 1.18906 1.22220 1.21543 1.22961 0.95019 0.85478 0.97526 1.22762 0.93407 0.96772 1.01854 1.22100 0.93611 0.99911 1.02255 1.21424 0.91880 0.92527 0.91532 1.20883 0.98807 0.91663 1.04624 1.67075 1.41473 0.98828 1.18672 0.92197 0.86153 0.92157 0.82051 0.74489 0.88674 0.90962 0.97229 0.92606 0.94122 0.91314 0.94041 0.89061 0.88934 0.82487 0.88681 0.89792 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 113.37 1.18 1.62 16 2 O -0.32 -5.86 10.47 -89.92 -0.94 -6.80 16 3 C 0.31 6.12 7.49 84.80 0.63 6.75 16 4 C -0.17 -3.04 9.55 22.75 0.22 -2.82 16 5 C -0.06 -1.09 5.91 -19.90 -0.12 -1.21 16 6 C 0.57 13.03 7.80 86.88 0.68 13.71 16 7 O -0.55 -16.05 16.20 -3.74 -0.06 -16.11 16 8 N -0.70 -14.48 5.20 -437.87 -2.28 -16.76 16 9 C 0.13 3.21 3.37 46.52 0.16 3.36 16 10 H 0.10 2.81 7.74 -2.39 -0.02 2.79 16 11 C 0.04 1.13 7.49 72.67 0.54 1.67 16 12 O -0.38 -13.57 11.14 -148.98 -1.66 -15.23 16 13 C 0.08 2.98 1.68 -10.31 -0.02 2.97 16 14 C 0.16 7.84 7.01 86.23 0.60 8.44 16 15 N -0.63 -32.38 3.67 -732.88 -2.69 -35.07 16 16 C -0.23 -12.84 10.70 84.03 0.90 -11.94 16 17 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 18 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 19 N -0.95 -56.73 11.39 21.65 0.25 -56.48 16 20 Si 0.98 45.14 29.55 68.60 2.03 47.17 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 C 0.12 4.80 8.37 86.24 0.72 5.52 16 25 C -0.11 -3.34 5.96 31.70 0.19 -3.15 16 26 C -0.16 -2.81 9.30 22.63 0.21 -2.60 16 27 C 0.16 2.62 6.77 42.49 0.29 2.90 16 28 C -0.10 -0.90 10.16 71.24 0.72 -0.18 16 29 N -0.53 -10.03 9.09 -297.17 -2.70 -12.73 16 30 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.72 8.11 -2.39 -0.02 0.70 16 33 H 0.16 2.30 6.53 -2.91 -0.02 2.28 16 34 H 0.42 6.84 6.64 -92.71 -0.62 6.22 16 35 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.06 2.93 7.05 -2.39 -0.02 2.91 16 39 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.07 2.57 7.98 -2.39 -0.02 2.55 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.09 2.68 7.85 -2.39 -0.02 2.66 16 43 H 0.09 2.87 7.83 -2.38 -0.02 2.85 16 44 H 0.16 2.55 7.74 -2.91 -0.02 2.52 16 45 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.10 0.55 8.07 -2.39 -0.02 0.53 16 Total: -1.00 -72.42 392.25 -0.30 -72.72 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.38 Total: 17.43 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 7.38 Total: 21.86 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -7.42 Total: -121.04 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -2.66 Total: -38.14 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -72.42 -0.30 -72.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053908590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.431 kcal (2) G-P(sol) polarization free energy of solvation -72.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds