Wall clock time and date at job start Wed Apr 1 2020 04:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35684 * 117.00034 * 2 1 4 4 C 1.38897 * 119.61963 * 180.27873 * 3 2 1 5 5 C 1.39580 * 118.94155 * 180.20407 * 4 3 2 6 6 C 1.48162 * 120.88992 * 179.79699 * 5 4 3 7 7 O 1.21513 * 119.99901 * 179.71829 * 6 5 4 8 8 N 1.34777 * 119.99726 * 359.97438 * 6 5 4 9 9 C 1.46505 * 119.99722 * 179.71959 * 8 6 5 10 10 H 1.08999 * 110.45055 * 32.40625 * 9 8 6 11 11 C 1.54538 * 110.51278 * 269.65897 * 9 8 6 12 12 O 1.44632 * 105.03523 * 217.72238 * 11 9 8 13 13 C 1.43246 * 105.22407 * 39.02322 * 12 11 9 14 14 C 1.52888 * 115.83787 * 90.92543 * 13 12 11 15 15 N 1.47784 * 85.78167 * 94.51426 * 14 13 12 16 16 C 1.36941 * 134.40005 * 203.87541 * 15 14 13 17 17 H 1.08000 * 119.99730 * 179.97438 * 16 15 14 18 18 C 1.38807 * 120.00266 * 359.97438 * 16 15 14 19 19 N 1.31624 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00225 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46937 * 60.00042 * 20 18 16 22 22 H 1.48495 * 109.47455 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47234 * 300.00547 * 20 18 16 24 24 C 1.47785 * 91.19736 * 23.87435 * 15 14 13 25 25 C 1.53468 * 106.26392 * 321.06831 * 13 12 11 26 26 C 1.39959 * 118.21661 * 359.52571 * 5 4 3 27 27 C 1.37973 * 119.13945 * 0.24941 * 26 5 4 28 28 C 1.50697 * 119.51688 * 180.02562 * 27 26 5 29 29 N 1.31910 * 120.97567 * 359.97438 * 27 26 5 30 30 H 1.08995 * 109.47137 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47172 * 300.00357 * 1 2 3 32 32 H 1.09009 * 109.46758 * 59.99968 * 1 2 3 33 33 H 1.07995 * 120.53392 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00483 * 359.72843 * 8 6 5 35 35 H 1.09004 * 110.33245 * 336.60772 * 11 9 8 36 36 H 1.09000 * 110.33214 * 98.83445 * 11 9 8 37 37 H 1.09000 * 113.82669 * 208.72730 * 14 13 12 38 38 H 1.09001 * 113.82172 * 340.30131 * 14 13 12 39 39 H 0.96995 * 119.99846 * 179.97438 * 19 18 16 40 40 H 1.09000 * 113.82367 * 221.91037 * 24 15 14 41 41 H 1.09000 * 113.92980 * 90.35124 * 24 15 14 42 42 H 1.08997 * 110.57603 * 264.15775 * 25 13 12 43 43 H 1.08992 * 110.70420 * 141.32720 * 25 13 12 44 44 H 1.08004 * 120.43135 * 180.27508 * 26 5 4 45 45 H 1.09004 * 109.47319 * 90.00360 * 28 27 26 46 46 H 1.09001 * 109.47187 * 209.99939 * 28 27 26 47 47 H 1.08995 * 109.47209 * 330.00086 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2724 -0.0059 5 6 4.0515 2.5235 -0.0014 6 6 5.5284 2.6415 -0.0029 7 8 6.0502 3.7388 -0.0042 8 7 6.2930 1.5316 -0.0080 9 6 7.7534 1.6483 -0.0157 10 1 8.0673 2.5376 0.5308 11 6 8.2862 1.6842 -1.4659 12 8 9.5170 0.9254 -1.4323 13 6 9.2560 -0.1760 -0.5544 14 6 8.7222 -1.4455 -1.2184 15 7 10.1323 -1.8862 -1.2590 16 6 10.8385 -2.7681 -2.0328 17 1 11.8937 -2.9160 -1.8566 18 6 10.1982 -3.4719 -3.0434 19 7 8.9123 -3.2913 -3.2584 20 14 11.1618 -4.6744 -4.0994 21 1 11.7436 -5.7343 -3.2371 22 1 10.2546 -5.2920 -5.0997 23 1 12.2536 -3.9525 -4.8010 24 6 10.4757 -0.9950 -0.1313 25 6 8.4016 0.3814 0.5922 26 6 3.2395 3.6635 -0.0014 27 6 1.8682 3.5116 -0.0005 28 6 0.9859 4.7333 -0.0011 29 7 1.3179 2.3127 -0.0002 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 4.0231 0.3683 -0.0100 34 1 5.8765 0.6556 -0.0068 35 1 7.5717 1.2169 -2.1436 36 1 8.4831 2.7117 -1.7717 37 1 8.0905 -2.0504 -0.5679 38 1 8.2851 -1.2771 -2.2026 39 1 8.4650 -3.7828 -3.9649 40 1 11.4231 -0.4708 -0.2570 41 1 10.3740 -1.4622 0.8483 42 1 9.0283 0.6433 1.4447 43 1 7.6364 -0.3367 0.8868 44 1 3.6807 4.6493 -0.0025 45 1 0.7725 5.0269 -1.0289 46 1 0.0519 4.5072 0.5135 47 1 1.4949 5.5493 0.5117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053908591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:59 Heat of formation + Delta-G solvation = -10.573303 kcal Electronic energy + Delta-G solvation = -30261.674168 eV Core-core repulsion = 26026.535801 eV Total energy + Delta-G solvation = -4235.138367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.25416 -40.28278 -39.26289 -38.14708 -36.17018 -34.66058 -33.49340 -32.11617 -32.08757 -30.35225 -28.69421 -28.14272 -26.90410 -25.88357 -24.96193 -24.63415 -23.05932 -22.18703 -21.14385 -20.63947 -19.07277 -18.79122 -17.41392 -17.04051 -16.74460 -16.40090 -16.23349 -15.94086 -15.26045 -15.21522 -14.97354 -14.92127 -14.57382 -14.42261 -14.35553 -13.90282 -13.59313 -13.16212 -13.01536 -12.83507 -12.81051 -12.69193 -12.50195 -12.16430 -12.03013 -11.69827 -11.64569 -11.36330 -11.18529 -11.10204 -10.81803 -10.55159 -10.47624 -10.26565 -10.21182 -9.97759 -9.79569 -9.52845 -9.20797 -8.91482 -8.80098 -8.79766 -6.88217 -5.74933 -3.06629 0.35047 0.77914 2.60049 2.64423 2.87195 3.41760 3.45569 3.45727 3.46751 3.74703 4.19538 4.34884 4.46983 4.51824 4.63648 4.66215 4.74450 4.92938 4.95930 5.00634 5.05981 5.09864 5.13941 5.20554 5.22948 5.31444 5.36622 5.40740 5.51230 5.57247 5.59735 5.71398 5.81324 5.94132 5.97030 5.97991 6.05773 6.29843 6.34516 6.49593 6.56618 6.85803 6.92607 7.17412 7.24179 7.44608 7.47316 7.63948 7.91126 7.99005 9.05690 9.72296 10.58533 11.42471 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.002463 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.687802 B =11366.361803 C =12836.567829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.303 6.303 3 C 0.325 3.675 4 C -0.165 4.165 5 C -0.047 4.047 6 C 0.561 3.439 7 O -0.526 6.526 8 N -0.707 5.707 9 C 0.113 3.887 10 H 0.104 0.896 11 C 0.038 3.962 12 O -0.333 6.333 13 C 0.055 3.945 14 C 0.153 3.847 15 N -0.605 5.605 16 C -0.220 4.220 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.129 3.871 25 C -0.147 4.147 26 C -0.154 4.154 27 C 0.164 3.836 28 C -0.104 4.104 29 N -0.527 5.527 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.149 0.851 34 H 0.405 0.595 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.253 0.747 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.151 0.849 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.986 13.473 10.020 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.146 3.854 4 C -0.186 4.186 5 C -0.058 4.058 6 C 0.347 3.653 7 O -0.403 6.403 8 N -0.360 5.360 9 C 0.008 3.992 10 H 0.122 0.878 11 C -0.041 4.041 12 O -0.251 6.251 13 C 0.013 3.987 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.347 4.347 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.003 3.997 25 C -0.186 4.186 26 C -0.175 4.175 27 C 0.028 3.972 28 C -0.162 4.162 29 N -0.253 5.253 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.166 0.834 34 H 0.242 0.758 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.169 0.831 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.109 13.689 9.627 24.658 hybrid contribution 0.622 -1.232 -0.519 1.475 sum -17.487 12.456 9.108 23.322 Atomic orbital electron populations 1.22890 0.76929 1.03215 1.02439 1.86289 1.23135 1.23948 1.87610 1.19598 0.88947 0.84732 0.92115 1.21231 0.92567 0.98580 1.06213 1.20141 0.93776 0.93194 0.98666 1.18065 0.85829 0.84675 0.76716 1.90787 1.74099 1.26218 1.49191 1.46020 1.06939 1.08952 1.74061 1.22529 0.78337 1.00337 0.97971 0.87755 1.23789 0.88005 0.97174 0.95119 1.89045 1.31212 1.37709 1.67108 1.23785 0.97617 0.88605 0.88654 1.22596 0.88257 0.87274 0.99176 1.45824 1.05404 1.48349 1.33514 1.18955 0.92110 1.14804 1.08878 0.90219 1.24764 0.96015 1.00357 0.99310 1.69793 1.08328 1.44872 1.34010 0.86185 0.78706 0.80792 0.79987 1.21204 1.21581 1.21064 1.22513 0.95514 0.89435 0.92203 1.23051 1.00046 0.95903 0.99634 1.21914 0.93224 0.99820 1.02561 1.20903 0.91646 0.91894 0.92791 1.20768 0.99087 0.92723 1.03587 1.67000 1.41236 0.98486 1.18569 0.88385 0.92262 0.92192 0.83384 0.75824 0.91816 0.88995 0.94813 0.90439 0.93662 0.92846 0.93429 0.89573 0.89693 0.83148 0.89884 0.90252 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.30 -3.21 10.47 -18.75 -0.20 -3.41 16 3 C 0.33 3.60 7.49 -17.16 -0.13 3.47 16 4 C -0.16 -1.72 9.55 -38.84 -0.37 -2.09 16 5 C -0.05 -0.52 5.91 -104.68 -0.62 -1.14 16 6 C 0.56 7.07 7.80 -12.18 -0.10 6.98 16 7 O -0.53 -8.06 16.09 5.35 0.09 -7.97 16 8 N -0.71 -8.24 5.04 -52.97 -0.27 -8.51 16 9 C 0.11 1.50 3.49 -66.20 -0.23 1.27 16 10 H 0.10 1.39 7.55 -51.93 -0.39 1.00 16 11 C 0.04 0.60 7.37 37.96 0.28 0.88 16 12 O -0.33 -6.65 11.44 -35.23 -0.40 -7.06 16 13 C 0.05 1.03 1.28 -90.66 -0.12 0.91 16 14 C 0.15 3.52 6.99 -3.40 -0.02 3.50 16 15 N -0.60 -15.75 3.71 -183.60 -0.68 -16.43 16 16 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.49 11.40 55.49 0.63 -26.86 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.13 2.66 8.47 -3.40 -0.03 2.63 16 25 C -0.15 -2.01 6.25 -25.57 -0.16 -2.17 16 26 C -0.15 -1.55 9.30 -39.03 -0.36 -1.92 16 27 C 0.16 1.53 6.77 -82.66 -0.56 0.97 16 28 C -0.10 -0.61 10.16 36.00 0.37 -0.25 16 29 N -0.53 -5.60 9.09 -9.60 -0.09 -5.68 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.06 0.44 8.10 -51.92 -0.42 0.02 16 33 H 0.15 1.31 6.53 -52.49 -0.34 0.97 16 34 H 0.41 4.04 6.52 -40.82 -0.27 3.77 16 35 H 0.06 1.05 8.06 -51.93 -0.42 0.63 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.03 0.76 7.96 -51.93 -0.41 0.35 16 38 H 0.08 2.03 7.20 -51.93 -0.37 1.65 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.05 8.12 -51.93 -0.42 0.62 16 43 H 0.08 1.04 7.40 -51.93 -0.38 0.66 16 44 H 0.15 1.38 7.74 -52.48 -0.41 0.98 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -35.13 391.87 -8.05 -43.18 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.76 Total: 1.80 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -1.26 Total: 7.60 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.40 Total: -57.48 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.51 Total: -18.44 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.13 -8.05 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053908591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.607 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds