Wall clock time and date at job start Wed Apr 1 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38002 * 120.82248 * 2 1 4 4 C 1.39130 * 119.26299 * 180.02562 * 3 2 1 5 5 O 1.35498 * 119.52170 * 180.02562 * 4 3 2 6 6 N 1.32427 * 120.95265 * 359.97438 * 4 3 2 7 7 C 1.31639 * 121.80133 * 359.70522 * 6 4 3 8 8 C 1.50697 * 119.69043 * 180.31220 * 7 6 4 9 9 C 1.39564 * 120.62394 * 0.57884 * 7 6 4 10 10 C 1.47614 * 120.50127 * 179.70410 * 9 7 6 11 11 O 1.21583 * 120.00110 * 269.72871 * 10 9 7 12 12 N 1.34777 * 119.99946 * 89.73046 * 10 9 7 13 13 C 1.46498 * 119.99828 * 180.27899 * 12 10 9 14 14 H 1.08998 * 110.45601 * 327.31879 * 13 12 10 15 15 C 1.54549 * 110.51214 * 90.06701 * 13 12 10 16 16 O 1.44639 * 105.03290 * 95.01376 * 15 13 12 17 17 C 1.43248 * 105.22070 * 39.02869 * 16 15 13 18 18 C 1.52886 * 115.83923 * 90.92232 * 17 16 15 19 19 N 1.47791 * 85.78238 * 94.51001 * 18 17 16 20 20 C 1.36935 * 134.40143 * 203.87399 * 19 18 17 21 21 H 1.07998 * 119.99323 * 179.97438 * 20 19 18 22 22 C 1.38806 * 120.00193 * 0.02562 * 20 19 18 23 23 N 1.31619 * 120.00299 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99845 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47426 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47363 * 119.99939 * 24 22 20 27 27 H 1.48511 * 109.46771 * 239.99627 * 24 22 20 28 28 C 1.47790 * 91.19253 * 23.87565 * 19 18 17 29 29 C 1.53469 * 106.26234 * 321.06273 * 17 16 15 30 30 H 1.08996 * 109.47254 * 269.97974 * 1 2 3 31 31 H 1.09000 * 109.47039 * 29.98055 * 1 2 3 32 32 H 1.09004 * 109.47405 * 149.97731 * 1 2 3 33 33 H 1.07994 * 120.36757 * 359.97438 * 3 2 1 34 34 H 0.96700 * 114.00393 * 89.99421 * 5 4 3 35 35 H 1.08998 * 109.47347 * 270.26769 * 8 7 6 36 36 H 1.09003 * 109.47000 * 30.26832 * 8 7 6 37 37 H 1.09007 * 109.47369 * 150.26412 * 8 7 6 38 38 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 39 39 H 1.08995 * 110.32930 * 213.90291 * 15 13 12 40 40 H 1.09003 * 110.32944 * 336.12858 * 15 13 12 41 41 H 1.08997 * 113.82485 * 208.72204 * 18 17 16 42 42 H 1.08994 * 113.82436 * 340.29941 * 18 17 16 43 43 H 0.96994 * 119.99954 * 180.02562 * 23 22 20 44 44 H 1.09001 * 113.82087 * 221.90932 * 28 19 18 45 45 H 1.08999 * 113.93361 * 90.35427 * 28 19 18 46 46 H 1.09001 * 110.57467 * 264.15724 * 29 17 16 47 47 H 1.09000 * 110.70198 * 141.33781 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0066 -0.0005 7 6 3.6205 -1.1601 0.0057 8 6 4.4080 -2.4449 0.0125 9 6 2.2256 -1.2044 0.0005 10 6 1.5171 -2.4994 0.0010 11 8 1.2250 -3.0330 -1.0518 12 7 1.1941 -3.0904 1.1684 13 6 0.4964 -4.3786 1.1688 14 1 -0.1683 -4.4521 0.3082 15 6 1.5113 -5.5441 1.1740 16 8 1.6616 -5.9046 2.5666 17 6 0.3469 -5.8012 3.1259 18 6 -0.4945 -7.0772 3.0903 19 7 0.0072 -7.3160 4.4598 20 6 0.1697 -8.4295 5.2401 21 1 0.5699 -8.3352 6.2387 22 6 -0.1789 -9.6794 4.7471 23 7 -0.6662 -9.7943 3.5299 24 14 0.0421 -11.1982 5.8119 25 1 0.6029 -10.8023 7.1288 26 1 -1.2729 -11.8583 6.0118 27 1 0.9727 -12.1416 5.1414 28 6 0.2634 -5.8731 4.6507 29 6 -0.2972 -4.5648 2.4841 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6936 2.1314 -0.0004 34 1 4.5077 2.6440 0.8835 35 1 4.6019 -2.7577 -1.0134 36 1 5.3547 -2.2880 0.5296 37 1 3.8371 -3.2183 0.5265 38 1 1.4275 -2.6649 2.0083 39 1 1.1219 -6.3878 0.6043 40 1 2.4661 -5.2167 0.7624 41 1 -1.5681 -6.8955 3.0402 42 1 -0.1508 -7.8111 2.3614 43 1 -0.9101 -10.6677 3.1856 44 1 1.2056 -5.6560 5.1539 45 1 -0.5802 -5.3261 5.0717 46 1 -0.1800 -3.6937 3.1288 47 1 -1.3513 -4.7451 2.2734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054013643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:00 Heat of formation + Delta-G solvation = -21.338342 kcal Electronic energy + Delta-G solvation = -30699.489995 eV Core-core repulsion = 26463.884820 eV Total energy + Delta-G solvation = -4235.605174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35713 -40.23998 -39.16596 -37.53144 -36.18757 -34.72322 -34.39359 -32.31319 -32.09663 -30.42257 -28.50729 -28.41727 -27.73307 -25.92139 -24.95074 -24.27000 -22.31226 -21.74198 -21.34757 -20.75368 -19.04505 -18.85769 -18.07977 -17.61001 -16.75870 -16.67085 -16.11093 -15.47186 -15.27966 -15.14262 -14.74301 -14.48041 -14.25435 -14.13042 -13.94765 -13.73319 -13.55470 -13.42741 -13.21674 -13.03031 -12.74221 -12.67187 -12.51764 -12.27916 -12.03146 -11.93835 -11.61256 -11.53258 -11.28865 -11.12609 -10.87720 -10.64088 -10.41687 -10.26519 -9.97729 -9.80701 -9.75566 -9.55619 -9.36294 -9.21460 -8.85312 -8.77970 -6.89255 -5.76008 -3.07980 0.35139 0.70746 2.26534 2.75960 3.06087 3.23682 3.39888 3.44926 3.47703 4.02856 4.08219 4.20025 4.33969 4.45873 4.58246 4.61940 4.76553 4.90296 4.96250 5.06400 5.10697 5.11863 5.14546 5.21342 5.27878 5.31368 5.43022 5.47189 5.55640 5.58726 5.69994 5.71978 5.78159 5.90901 5.95671 5.99587 6.02403 6.30228 6.34469 6.44212 6.56017 6.91586 7.00361 7.17956 7.23814 7.45658 7.46968 7.64111 7.91828 7.98098 9.04641 9.71184 10.57172 11.41448 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.002190 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.344597 B =12781.246374 C =12994.785996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.013 3.987 3 C -0.198 4.198 4 C 0.333 3.667 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.198 3.802 8 C -0.115 4.115 9 C -0.193 4.193 10 C 0.573 3.427 11 O -0.526 6.526 12 N -0.708 5.708 13 C 0.110 3.890 14 H 0.105 0.895 15 C 0.038 3.962 16 O -0.336 6.336 17 C 0.055 3.945 18 C 0.152 3.848 19 N -0.605 5.605 20 C -0.220 4.220 21 H 0.081 0.919 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.130 3.870 29 C -0.145 4.145 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.404 0.596 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.403 0.597 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.253 0.747 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.079 0.921 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 24.343 -6.355 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.005 3.995 3 C -0.219 4.219 4 C 0.154 3.846 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.060 3.940 8 C -0.172 4.172 9 C -0.199 4.199 10 C 0.357 3.643 11 O -0.402 6.402 12 N -0.359 5.359 13 C 0.006 3.994 14 H 0.123 0.877 15 C -0.040 4.040 16 O -0.254 6.254 17 C 0.014 3.986 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.347 4.347 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.004 3.996 29 C -0.184 4.184 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.238 0.762 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.678 23.549 -7.513 25.157 hybrid contribution -0.799 -0.346 1.258 1.530 sum 3.880 23.203 -6.255 24.343 Atomic orbital electron populations 1.20963 0.89190 1.04392 1.03684 1.20210 0.97003 0.90805 0.91470 1.21880 0.93726 0.99378 1.06885 1.19260 0.87049 0.85061 0.93189 1.84729 1.75985 1.34008 1.34135 1.67006 1.41838 0.97828 1.15982 1.21077 0.89109 0.93223 0.90625 1.20910 1.00626 0.91403 1.04237 1.20693 0.94878 0.94304 1.09977 1.17890 0.78352 0.83780 0.84276 1.90847 1.53450 1.64712 1.31155 1.46196 1.59042 1.22367 1.08287 1.22537 0.94176 0.82594 1.00138 0.87666 1.23810 0.99236 0.95651 0.85349 1.89024 1.26331 1.89392 1.20655 1.23790 0.84450 0.94488 0.95862 1.22609 0.94212 0.91304 0.89255 1.45847 1.73795 0.99805 1.13657 1.19033 1.36014 0.83593 0.96063 0.90156 1.24771 1.01364 0.97392 0.96945 1.69813 1.48696 1.22772 1.15612 0.86042 0.77269 0.83092 0.79325 1.20463 1.21784 1.21683 1.22495 0.98444 0.87489 0.91166 1.23074 1.00701 0.99728 0.94907 0.89541 0.90117 0.90255 0.83561 0.73795 0.89263 0.89409 0.90080 0.76162 0.91017 0.89526 0.94679 0.90343 0.93703 0.93019 0.93572 0.90261 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.69 36.00 0.35 -0.50 16 2 C 0.01 0.11 5.95 -103.96 -0.62 -0.50 16 3 C -0.20 -1.56 9.73 -39.34 -0.38 -1.95 16 4 C 0.33 3.16 7.74 -16.96 -0.13 3.03 16 5 O -0.48 -3.70 13.55 -18.19 -0.25 -3.95 16 6 N -0.51 -5.74 10.28 -9.20 -0.09 -5.83 16 7 C 0.20 2.17 6.82 -82.18 -0.56 1.61 16 8 C -0.11 -1.11 9.78 36.00 0.35 -0.75 16 9 C -0.19 -2.04 5.65 -104.82 -0.59 -2.63 16 10 C 0.57 6.72 4.33 -12.43 -0.05 6.67 16 11 O -0.53 -8.03 16.76 5.29 0.09 -7.94 16 12 N -0.71 -7.36 5.08 -53.15 -0.27 -7.63 16 13 C 0.11 1.36 3.49 -66.20 -0.23 1.13 16 14 H 0.11 1.33 7.56 -51.93 -0.39 0.94 16 15 C 0.04 0.57 7.37 37.97 0.28 0.85 16 16 O -0.34 -6.32 11.44 -35.23 -0.40 -6.72 16 17 C 0.06 1.00 1.28 -90.66 -0.12 0.88 16 18 C 0.15 3.48 7.00 -3.39 -0.02 3.46 16 19 N -0.60 -15.50 3.71 -183.57 -0.68 -16.18 16 20 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -27.43 11.40 55.49 0.63 -26.80 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.13 2.58 8.47 -3.40 -0.03 2.55 16 29 C -0.14 -1.86 6.24 -25.57 -0.16 -2.02 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.08 0.67 7.19 -51.93 -0.37 0.29 16 33 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.40 0.99 9.06 45.56 0.41 1.41 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.79 7.06 -51.92 -0.37 0.42 16 38 H 0.40 3.49 8.38 -40.82 -0.34 3.15 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.19 8.06 -51.93 -0.42 0.78 16 41 H 0.04 0.80 7.96 -51.93 -0.41 0.38 16 42 H 0.08 2.05 7.19 -51.93 -0.37 1.67 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.84 7.69 -51.93 -0.40 0.45 16 47 H 0.09 1.11 7.84 -51.93 -0.41 0.70 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -36.40 391.93 -8.26 -44.66 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.00 Total: 2.08 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.17 Total: 5.12 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.41 Total: -56.44 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.56 Total: -18.61 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.40 -8.26 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054013643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.320 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds